View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14409_low_18 (Length: 279)
Name: NF14409_low_18
Description: NF14409
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14409_low_18 |
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Alignment Details
Target: chr4 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 18 - 259
Target Start/End: Complemental strand, 19397133 - 19396892
Alignment:
| Q |
18 |
gcaaatagttggtgatacaattgatattggcggaatacacggggtagtgggatttaagttaatgggtggtatttattcttgtgttttttggctacatatt |
117 |
Q |
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| T |
19397133 |
gcaaatagttgttgatacagttgatattggcggaatacatggggtagtgggatttaagttaatgggtgggatttattcttgtgttttttggctacatatt |
19397034 |
T |
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| Q |
118 |
ttcttgcaaattagcattttcctttaaaaattagagacaaaaattgtaggacagataaaattgagggatagaaaagtattcaagcctagataattttatt |
217 |
Q |
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| T |
19397033 |
ttcttgcaaattagcattttcctttaagaattggagacaaaaatcgtaggacagataaaattgagggatagaaaagtatttaagcctagataattttatt |
19396934 |
T |
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| Q |
218 |
tgtgtgttatactagttcaagttcaacactagtgagcgacaa |
259 |
Q |
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| T |
19396933 |
tgtgtgttatactagttcaagttcaacactagtgagcgacaa |
19396892 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 70 - 141
Target Start/End: Original strand, 25369027 - 25369098
Alignment:
| Q |
70 |
tttaagttaatgggtggtatttattcttgtgttttttggctacatattttcttgcaaattagcattttcctt |
141 |
Q |
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| T |
25369027 |
tttaaattaatagctgggatttattcttgtgtttcttgcccgcatattttcttgcaaattagcattttcctt |
25369098 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 57; Significance: 7e-24; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 50 - 142
Target Start/End: Original strand, 39047491 - 39047583
Alignment:
| Q |
50 |
gaatacacggggtagtgggatttaagttaatgggtggtatttattcttgtgttttttggctacatattttcttgcaaattagcattttccttt |
142 |
Q |
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| T |
39047491 |
gaatacatggggtagtgggatttaaatcaatgggtgggatttattcctgtgtttcttggctgcatatttttttgcaaattagaattttccttt |
39047583 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 44 - 137
Target Start/End: Original strand, 54609164 - 54609257
Alignment:
| Q |
44 |
ttggcggaatacacggggtagtgggatttaagttaatgggtggtatttattcttgtgttttttggctacatattttcttgcaaattagcatttt |
137 |
Q |
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| T |
54609164 |
ttggcggaatacatggggcagtgaaatttaaattaatggttgggatttattcttgtgtttcttgccagcatattttcttgcaaattagcatttt |
54609257 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 44 - 141
Target Start/End: Complemental strand, 7682648 - 7682551
Alignment:
| Q |
44 |
ttggcggaatacacggggtagtgggatttaagttaatgggtggtatttattcttgtgttttttggctacatattttcttgcaaattagcattttcctt |
141 |
Q |
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||||||||||||| ||| ||||||| | || ||||||||||| |||||||||||||||| |||||| |||| |||||||||||||| |||||||||| |
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| T |
7682648 |
ttggcggaatacatgggttagtgggcataaaattaatgggtgggatttattcttgtgtttcttggctgcatactttcttgcaaattaacattttcctt |
7682551 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 19 - 132
Target Start/End: Original strand, 3462132 - 3462246
Alignment:
| Q |
19 |
caaatagttggtgatacaattgatatt-ggcggaatacacggggtagtgggatttaagttaatgggtggtatttattcttgtgttttttggctacatatt |
117 |
Q |
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||||||||| |||||||||| | |||| ||||||||||| ||||||||| ||||||| ||||||| ||| ||||||| |||| ||| ||| || ||||| |
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| T |
3462132 |
caaatagttagtgatacaataggtatttggcggaatacatggggtagtgagatttaaattaatggttgggatttattgttgtttttcttgcctgtatatt |
3462231 |
T |
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| Q |
118 |
ttcttgcaaattagc |
132 |
Q |
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| T |
3462232 |
ttcttgcaaattagc |
3462246 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 44 - 139
Target Start/End: Complemental strand, 32698133 - 32698038
Alignment:
| Q |
44 |
ttggcggaatacacggggtagtgggatttaagttaatgggtggtatttattcttgtgttttttggctacatattttcttgcaaattagcattttcc |
139 |
Q |
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| T |
32698133 |
ttggcggaatacatggggtagtgggcataaaatcaatgggtgggatttattcttgtgtttattcggtgcgtactttcttgcaaattagcattttcc |
32698038 |
T |
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