View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14409_low_2 (Length: 543)
Name: NF14409_low_2
Description: NF14409
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14409_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 77; Significance: 2e-35; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 196 - 305
Target Start/End: Original strand, 4219207 - 4219316
Alignment:
| Q |
196 |
tccttatataacggggtggagtaccttgtactacttttatttcattttacatatnnnnnnntatcgttatattatttttatgaaaaagaaataattatag |
295 |
Q |
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| T |
4219207 |
tccttatataacgggttggagtaccttgtactacttttatttcattttacatataaaaaaatattgttatattatttttatgaaaaagaaataattatag |
4219306 |
T |
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| Q |
296 |
agatagactt |
305 |
Q |
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||||| |||| |
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| T |
4219307 |
agataaactt |
4219316 |
T |
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Target: chr8; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 19 - 159
Target Start/End: Original strand, 4218997 - 4219142
Alignment:
| Q |
19 |
ggagtacgttgacataaaaattggcaacataattggagtttaaatcatcatt---gatatttttgtnnnnnnnn-tgcttaatattgaatccaaatttat |
114 |
Q |
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| T |
4218997 |
ggagtactatgacataataattgccaacataattggagtttaaatcatcattattgatatttttgtaaaaaaaaatgcttaatattgaatccaaatttat |
4219096 |
T |
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| Q |
115 |
actatttggactttggtttgttggtaagat-aattaaatataaact |
159 |
Q |
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| T |
4219097 |
actatttggaaattggtttgttggtaagataaattaaatataaact |
4219142 |
T |
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