View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14409_low_20 (Length: 255)
Name: NF14409_low_20
Description: NF14409
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14409_low_20 |
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Alignment Details
Target: chr3 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 53675761 - 53675999
Alignment:
| Q |
1 |
acctgtttaagcaaagagacactgtgtggaccaagtgcgtacatactagatttggttaaacaaaccaaaaggatctgacacatgaaactatatcttttta |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53675761 |
acctgtttaagcaaagagacactgtgtggaccaagtgcgtacatactagatttggttaaacaaaccaaaaggatctgacacatgaaactatatcttttta |
53675860 |
T |
|
| Q |
101 |
taaggaaagacaccagccctgtaaacctcagaccagtggaccattatccacaacaatatatgcatgtaaaagtcaaccaattataatagaattcnnnnnn |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53675861 |
taaggaaagacaccagccctgtaaacctcagaccagtggaccattatccacaacaatatatgcatgtaaaagtcaaccaattataatagaattctttttc |
53675960 |
T |
|
| Q |
201 |
nnnnnngaagaaattataatagaattctaaggtcttctt |
239 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
53675961 |
ttttttgaagaaattataatagaattctaaggtcttctt |
53675999 |
T |
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