View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14409_low_27 (Length: 230)
Name: NF14409_low_27
Description: NF14409
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14409_low_27 |
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| [»] scaffold0363 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 73; Significance: 2e-33; HSPs: 10)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 11 - 187
Target Start/End: Complemental strand, 13167679 - 13167500
Alignment:
| Q |
11 |
gtgtagaagagtaatggaaccacttttccatgccaggcatagcaggtaagaagttccaaataatagga--tacttatg-attttctgaaagtactcttgt |
107 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||| | | | ||| ||| ||||||||||| |||| ||| |
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| T |
13167679 |
gtgtagaagagtaatggaaccaattttccatgccaggcatagcaggtaagaagtgccacgcactgtcacatacaaatgcattttctgaaactacttttgc |
13167580 |
T |
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| Q |
108 |
tccaagttcaatcccatccatagcatctttcaaaacagtttggtatgaatgtggatccaatattttgcagttaaggagca |
187 |
Q |
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| T |
13167579 |
tacaagttcaatcctttccatagcatcgtttaaaactgtttggtatgaatgtggatccaattttatgcagttaaggagca |
13167500 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 13 - 214
Target Start/End: Complemental strand, 5553949 - 5553739
Alignment:
| Q |
13 |
gtagaagagtaatggaaccacttttccatgccaggcatagcaggtaagaagttccaaataata-----ggatacttatg-attttctgaaagtactcttg |
106 |
Q |
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|||||||||||||||||||| |||||||||||||||||||| ||||||||||| |||||||| | | | ||| |||||||||| | |||||| |
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| T |
5553949 |
gtagaagagtaatggaaccaattttccatgccaggcatagctggtaagaagttgaaaataatatctttgtgtccatattcattttctgaattttctcttg |
5553850 |
T |
|
| Q |
107 |
ttccaagttcaatcccatccatagcatctttcaaaacagtttggtatgaatgtggatccaatattttgcagt---taaggagcacaataaaacaaagact |
203 |
Q |
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| |||||||||| | ||||||||||||||||||| |||||||||||||||| |||||| ||| ||||| |||||| ||||||| || ||||||| |
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| T |
5553849 |
cttcaagttcaatttgaaccatagcatctttcaaaactgtttggtatgaatgtgtatccaaattttggcagttaataaggaccacaatataataaagact |
5553750 |
T |
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| Q |
204 |
gggtttgtcat |
214 |
Q |
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||||||||||| |
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| T |
5553749 |
gggtttgtcat |
5553739 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 110 - 199
Target Start/End: Complemental strand, 14407109 - 14407020
Alignment:
| Q |
110 |
caagttcaatcccatccatagcatctttcaaaacagtttggtatgaatgtggatccaatattttgcagttaaggagcacaataaaacaaa |
199 |
Q |
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| T |
14407109 |
caagttcaatcccatccatagcatctttcaaaactgtttggtatgaatgtgaatccatgtttttgcagttaaggagcgagataaaacaaa |
14407020 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 11 - 208
Target Start/End: Original strand, 6307895 - 6308083
Alignment:
| Q |
11 |
gtgtagaagagtaatggaaccacttttccatgccaggcatagcaggtaagaagttccaaataataggatacttatgattttctgaaagtactcttgttcc |
110 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||| |||| ||||||||| || | || || | |||| || ||| |
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| T |
6307895 |
gtgtagaagagtaatggaaccaattttccatgccaggcatagcaggtaaaaagtaccaaataatttcatcatcatcatat----aaag-----atggtcc |
6307985 |
T |
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| Q |
111 |
aagttcaatcccatccatagcatctttcaaaacagtttggtatgaatgtggatccaatattttgcagttaaggagcacaataaaacaaagactgggtt |
208 |
Q |
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| T |
6307986 |
agtttcaattctatccatagcatctttcaaaactgtttggtatgaatgtggttccaaatttttgcagttaaggagataaataaaacaaggattgggtt |
6308083 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 102 - 189
Target Start/End: Original strand, 5604984 - 5605071
Alignment:
| Q |
102 |
tcttgttccaagttcaatcccatccatagcatctttcaaaacagtttggtatgaatgtggatccaatattttgcagttaaggagcaca |
189 |
Q |
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||||| |||||||||||||||| |||||| |||||||||||| |||||||||||||||||||||||| | |||||||||||||||| |
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| T |
5604984 |
tcttgctccaagttcaatcccacccatagaatctttcaaaactgtttggtatgaatgtggatccaattctacgcagttaaggagcaca |
5605071 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 102 - 189
Target Start/End: Complemental strand, 5630386 - 5630299
Alignment:
| Q |
102 |
tcttgttccaagttcaatcccatccatagcatctttcaaaacagtttggtatgaatgtggatccaatattttgcagttaaggagcaca |
189 |
Q |
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| T |
5630386 |
tcttgctccaagttcaatcccacccatagaatctttcaaaactgtttggtatgaatgtggatccaattctacgcagttaaggagcaca |
5630299 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 11 - 198
Target Start/End: Complemental strand, 5647970 - 5647777
Alignment:
| Q |
11 |
gtgtagaagagtaatggaaccacttttccatgccaggcatagcaggtaagaagttccaaataataggat------acttatgattttctgaaagtactct |
104 |
Q |
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|||||||||||||||||||||| |||||| | |||||||||||||||||||||||| |||||||| || | | |||||||||| ||| |
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| T |
5647970 |
gtgtagaagagtaatggaaccaattttccgttccaggcatagcaggtaagaagttcaaaataatataattgtgtgcatcttcattttctgaactatgtct |
5647871 |
T |
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| Q |
105 |
tgttccaagttcaatcccatccatagcatctttcaaaacagtttggtatgaatgtggatccaatattttgcagttaaggagcacaataaaacaa |
198 |
Q |
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|| | ||||||||| |||||||||||| ||||||||||| || ||||||||||||||||||||| | ||| |||||| ||| | || ||||||| |
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| T |
5647870 |
tgcttcaagttcaaacccatccatagcctctttcaaaactgtctggtatgaatgtggatccaatttattgtagttaatgagaaaaagaaaacaa |
5647777 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 13 - 58
Target Start/End: Original strand, 5604895 - 5604940
Alignment:
| Q |
13 |
gtagaagagtaatggaaccacttttccatgccaggcatagcaggta |
58 |
Q |
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||||||| |||||||||||| ||||||||||||||||||||||||| |
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| T |
5604895 |
gtagaagggtaatggaaccaattttccatgccaggcatagcaggta |
5604940 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 13 - 58
Target Start/End: Complemental strand, 5630475 - 5630430
Alignment:
| Q |
13 |
gtagaagagtaatggaaccacttttccatgccaggcatagcaggta |
58 |
Q |
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||||||| |||||||||||| ||||||||||||||||||||||||| |
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| T |
5630475 |
gtagaagggtaatggaaccaattttccatgccaggcatagcaggta |
5630430 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 11 - 75
Target Start/End: Complemental strand, 32635817 - 32635753
Alignment:
| Q |
11 |
gtgtagaagagtaatggaaccacttttccatgccaggcatagcaggtaagaagttccaaataata |
75 |
Q |
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| T |
32635817 |
gtgtagaagggtgatgaaaccaatattctatgccaggcatagcaggtaagaagtaccaaataata |
32635753 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0363 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: scaffold0363
Description:
Target: scaffold0363; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 110 - 199
Target Start/End: Original strand, 11744 - 11833
Alignment:
| Q |
110 |
caagttcaatcccatccatagcatctttcaaaacagtttggtatgaatgtggatccaatattttgcagttaaggagcacaataaaacaaa |
199 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||| ||||| ||||||||||||||||| |||||||||| |
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| T |
11744 |
caagttcaatcccatccatagcatctttcaaaactgtttggtatgaatgtgaatccatgtttttgcagttaaggagcgagataaaacaaa |
11833 |
T |
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