View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14409_low_3 (Length: 491)

Name: NF14409_low_3
Description: NF14409
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14409_low_3
NF14409_low_3
[»] chr7 (3 HSPs)
chr7 (1-453)||(5645074-5645526)
chr7 (216-286)||(31802468-31802538)
chr7 (194-271)||(43203500-43203578)
[»] chr8 (2 HSPs)
chr8 (77-205)||(24797772-24797899)
chr8 (225-269)||(7947563-7947607)
[»] chr3 (3 HSPs)
chr3 (194-300)||(43892090-43892197)
chr3 (219-283)||(39694096-39694160)
chr3 (218-283)||(34297466-34297532)
[»] chr1 (1 HSPs)
chr1 (231-286)||(5617591-5617646)
[»] scaffold0996 (1 HSPs)
scaffold0996 (216-303)||(1539-1626)
[»] chr2 (3 HSPs)
chr2 (194-300)||(16468356-16468463)
chr2 (219-285)||(30928222-30928288)
chr2 (216-286)||(36756964-36757034)
[»] chr4 (2 HSPs)
chr4 (216-286)||(54421417-54421487)
chr4 (251-300)||(43733948-43733997)
[»] chr5 (1 HSPs)
chr5 (216-288)||(13020926-13020998)


Alignment Details
Target: chr7 (Bit Score: 272; Significance: 1e-152; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 1 - 453
Target Start/End: Original strand, 5645074 - 5645526
Alignment:
Q  1 tcagactattttcaagtttctgccactgtctttgaagcggaatccatgggattgttggaagccatcaaaacgactataatggtatgcaaagagttttgtt 100  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5645074 tcagactattttcaagtttctgccattgtctttgaagcggaatccatgggattgttggaagccatcaaaacgactataatggtatgcaaagagttttgtt 5645173  T
Q  101 tgaatctgatagcatgatacttgttaatgcacttcatacctctaatactcctcttaatgaatttgggga-cttctgcttcaatgaaaatcattattgtta 199  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||| |||||||||| |||||||||||||||    
T  5645174 tgaatctgatagcaggatacttgttaatgcacttcatacctctaatactcctcttaataaatttggggaccttgtgcttcaatgtaaatcattattgtta 5645273  T
Q  200 agtaaccctga-cttgcagtgtcgtttgttcggaggcaagcaaacaagattactcataatattgttagagctgccttatctcatcctaactctcatatct 298  Q
    |||||||| ||  |||  |||||||||||||| ||| ||||||| |||||| |||||| |||| ||||||||| |||||||||||||||| | |||||||    
T  5645274 agtaaccccgattttgtcgtgtcgtttgttcgaaggtaagcaaataagattgctcatagtattattagagctgtcttatctcatcctaacccccatatct 5645373  T
Q  299 ttaattataaatgaaatgcagtgattctgcctttgctctnnnnnnnnngatgtttagggttttctcttactacacacattggagtaaaca-nnnnnnnat 397  Q
    |||||| ||||||||||||||||||||||||||||||||         |||||||||||||||||||| ||  |||||||||| ||||||        ||    
T  5645374 ttaattgtaaatgaaatgcagtgattctgcctttgctct-aaaaaaaagatgtttagggttttctcttcct--acacattggaataaacattttttttat 5645470  T
Q  398 tcataatttaagaatatgtaaacatttatgctatatactatagaacttacgtataa 453  Q
    ||| ||||||||||||||||||||||||||||||| ||||| ||||||||||||||    
T  5645471 tcaaaatttaagaatatgtaaacatttatgctataaactattgaacttacgtataa 5645526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 216 - 286
Target Start/End: Original strand, 31802468 - 31802538
Alignment:
Q  216 agtgtcgtttgttcggaggcaagcaaacaagattactcataatattgttagagctgccttatctcatccta 286  Q
    |||||||| ||||||||||||||| || ||| || |||||| ||||| ||||||| |||||| ||||||||    
T  31802468 agtgtcgtatgttcggaggcaagctaataaggttgctcatagtattgctagagcttccttatgtcatccta 31802538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 194 - 271
Target Start/End: Complemental strand, 43203578 - 43203500
Alignment:
Q  194 ttgttaagtaaccctgact-tgcagtgtcgtttgttcggaggcaagcaaacaagattactcataatattgttagagctg 271  Q
    |||||||||||||| |||| || ||||||||||||| ||||||||||||| |  || |||||||| |||| ||||||||    
T  43203578 ttgttaagtaaccccgactatgtagtgtcgtttgttaggaggcaagcaaatagtatgactcataacattgctagagctg 43203500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 77 - 205
Target Start/End: Original strand, 24797772 - 24797899
Alignment:
Q  77 taatggtatgcaaagagttttgtttgaatctgatagcatgatacttgttaatgcacttcatacctctaatactcctcttaatgaatttgggga-cttctg 175  Q
    |||||||||||||||||||  |||||||| ||||| ||  ||||||||||||||| || ||||||||||||| || |||||| ||||| || | ||| ||    
T  24797772 taatggtatgcaaagagtt--gtttgaatatgataacagtatacttgttaatgcaattaatacctctaatacaccgcttaattaatttaggaaccttgtg 24797869  T
Q  176 cttcaatgaaaatcattattgttaagtaac 205  Q
    ||| |||| ||| | |||||||||||||||    
T  24797870 cttaaatgtaaaactttattgttaagtaac 24797899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 225 - 269
Target Start/End: Complemental strand, 7947607 - 7947563
Alignment:
Q  225 tgttcggaggcaagcaaacaagattactcataatattgttagagc 269  Q
    |||| |||||||| |||||||||||| | ||||||||||||||||    
T  7947607 tgtttggaggcaaacaaacaagattattgataatattgttagagc 7947563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000005; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 194 - 300
Target Start/End: Original strand, 43892090 - 43892197
Alignment:
Q  194 ttgttaagtaaccctgact-tgcagtgtcgtttgttcggaggcaagcaaacaagattactcataatattgttagagctgccttatctcatcctaactctc 292  Q
    |||||||||||||| |||| || ||||||||||||| ||||||||||||| |   |  ||||||| |||| |||||||||  ||||| |||||||| |||    
T  43892090 ttgttaagtaaccccgactatgtagtgtcgtttgttaggaggcaagcaaatagtgtggctcataacattgctagagctgctctatctaatcctaaccctc 43892189  T
Q  293 atatcttt 300  Q
    || |||||    
T  43892190 atctcttt 43892197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 219 - 283
Target Start/End: Complemental strand, 39694160 - 39694096
Alignment:
Q  219 gtcgtttgttcggaggcaagcaaacaagattactcataatattgttagagctgccttatctcatc 283  Q
    ||||||||||  |||||||||||| ||| |||||||||||||| ||| || || |||||||||||    
T  39694160 gtcgtttgtttagaggcaagcaaataagtttactcataatattattaaagttgtcttatctcatc 39694096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 218 - 283
Target Start/End: Complemental strand, 34297532 - 34297466
Alignment:
Q  218 tgtcgtttgttcggaggcaagcaaacaagatta-ctcataatattgttagagctgccttatctcatc 283  Q
    ||||||||||| ||||||||| ||| ||| ||  |||||| |||||||||||| |||||||||||||    
T  34297532 tgtcgtttgttaggaggcaagtaaataaggtttgctcatattattgttagagccgccttatctcatc 34297466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 231 - 286
Target Start/End: Original strand, 5617591 - 5617646
Alignment:
Q  231 gaggcaagcaaacaagattactcataatattgttagagctgccttatctcatccta 286  Q
    ||||||| |||||||||||||| |||| ||||| |||||| |||||||||||||||    
T  5617591 gaggcaaacaaacaagattacttataaaattgtcagagcttccttatctcatccta 5617646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0996 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0996
Description:

Target: scaffold0996; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 216 - 303
Target Start/End: Complemental strand, 1626 - 1539
Alignment:
Q  216 agtgtcgtttgttcggaggcaagcaaacaagattactcataatattgttagagctgccttatctcatcctaactctcatatctttaat 303  Q
    |||||||| ||||||||||||||| || | | || |||||| ||||| ||||||| |||||| |||||||| | | ||||| ||||||    
T  1626 agtgtcgtatgttcggaggcaagctaatagggttgctcatagtattgctagagcttccttatgtcatcctagcccccatatttttaat 1539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 194 - 300
Target Start/End: Complemental strand, 16468463 - 16468356
Alignment:
Q  194 ttgttaagtaaccctgact-tgcagtgtcgtttgttcggaggcaagcaaacaagattactcataatattgttagagctgccttatctcatcctaactctc 292  Q
    |||||||||||||| |||| || ||||||||||||| ||||| |||||||||   |  ||||||| |||| |||||||||  ||||| |||||| | |||    
T  16468463 ttgttaagtaaccccgactatgtagtgtcgtttgttaggaggtaagcaaacagtgtagctcataacattgctagagctgctctatctaatcctagccctc 16468364  T
Q  293 atatcttt 300  Q
    || |||||    
T  16468363 atgtcttt 16468356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 219 - 285
Target Start/End: Original strand, 30928222 - 30928288
Alignment:
Q  219 gtcgtttgttcggaggcaagcaaacaagattactcataatattgttagagctgccttatctcatcct 285  Q
    |||||||||| ||||||||  ||| ||| || |||||| ||||| |||||| |||||||||||||||    
T  30928222 gtcgtttgttaggaggcaaataaataaggttgctcatagtattgctagagccgccttatctcatcct 30928288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 216 - 286
Target Start/End: Complemental strand, 36757034 - 36756964
Alignment:
Q  216 agtgtcgtttgttcggaggcaagcaaacaagattactcataatattgttagagctgccttatctcatccta 286  Q
    |||||||||| ||||||||||||| || ||  || |||||| ||||| ||||||| ||||||| |||||||    
T  36757034 agtgtcgtttattcggaggcaagctaataaagttgctcatagtattgctagagcttccttatcacatccta 36756964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 216 - 286
Target Start/End: Complemental strand, 54421487 - 54421417
Alignment:
Q  216 agtgtcgtttgttcggaggcaagcaaacaagattactcataatattgttagagctgccttatctcatccta 286  Q
    |||||||||| ||||||||||||| || ||| ||  ||||| ||||| ||||||| ||||||| |||||||    
T  54421487 agtgtcgtttattcggaggcaagctaataaggttggtcatagtattgctagagcttccttatcacatccta 54421417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 251 - 300
Target Start/End: Original strand, 43733948 - 43733997
Alignment:
Q  251 ctcataatattgttagagctgccttatctcatcctaactctcatatcttt 300  Q
    |||||| ||||| ||||||||||||||||||||||| | | |||||||||    
T  43733948 ctcatagtattgctagagctgccttatctcatcctagcccccatatcttt 43733997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 216 - 288
Target Start/End: Complemental strand, 13020998 - 13020926
Alignment:
Q  216 agtgtcgtttgttcggaggcaagcaaacaagattactcataatattgttagagctgccttatctcatcctaac 288  Q
    |||||||| |||||||||||||||||| ||| || || ||| ||||| ||||||  |||||||  ||||||||    
T  13020998 agtgtcgtatgttcggaggcaagcaaataaggttgcttatagtattgctagagcgtccttatccaatcctaac 13020926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University