View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14409_low_30 (Length: 211)
Name: NF14409_low_30
Description: NF14409
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14409_low_30 |
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Alignment Details
Target: chr2 (Bit Score: 164; Significance: 8e-88; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 164; E-Value: 8e-88
Query Start/End: Original strand, 14 - 193
Target Start/End: Complemental strand, 41485409 - 41485230
Alignment:
| Q |
14 |
aatatgacaaattaactgaatgtaaaaagaaaatctggtcttttcatagacctgacctgatcctaccaattttctcctaaaatgtaaaactttatgaatt |
113 |
Q |
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| T |
41485409 |
aatatgacaaattaactgaatgtaaaaagaaaatctgctcttttcatagacctgacccgatcctaccaattttctcctaaaatgtaaaactttatgaatt |
41485310 |
T |
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| Q |
114 |
aaaatcatcatctttggacacaaacaactgaatagctaatagatagtttagacaagcaaccaagttattcacatcataag |
193 |
Q |
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| T |
41485309 |
aaaatcatcatctttggacacaaacaactggatagctaatagacagtttagacaagcaaccaagttattcacatcataag |
41485230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 14 - 187
Target Start/End: Complemental strand, 40752532 - 40752359
Alignment:
| Q |
14 |
aatatgacaaattaactgaa--tgtaaaaagaaaatctggtcttttcatagacctgacctgatcctaccaattttctcctaaaatgtaaaactttatgaa |
111 |
Q |
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| T |
40752532 |
aatatgacaaattaactaaaaatgtaaaaagaaaatatgctcttttcatagacctgacccgactctaccaattttcacctaaaatgtaaaac--tatgta |
40752435 |
T |
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| Q |
112 |
ttaaaatcatcatctttggacacaaacaactgaatagctaatagatagtttagacaagcaaccaagttattcacat |
187 |
Q |
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| T |
40752434 |
ttacaatcatcaactttggacacaaacaactggatagctaatagacagttgaaacaagcaaccacgtgattcacat |
40752359 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 14 - 175
Target Start/End: Complemental strand, 41471314 - 41471155
Alignment:
| Q |
14 |
aatatgacaaattaactga--atgtaaaaagaaaatctggtcttttcatagacctgacctgatcctaccaa-ttttctcctaaaatgtaaaactttatga |
110 |
Q |
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| T |
41471314 |
aatatgacaaattaattaataatgtaaaaagaaaatcttttgttttcatagacctga-----ttctaccaaattttcaactaaaatgttaaacattatga |
41471220 |
T |
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| Q |
111 |
attaaaatcatcatctttggacacaaacaactgaatagctaatagatagtttagacaagcaacca |
175 |
Q |
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| T |
41471219 |
attaaaatcatcacctttggacacagacaacgggatagcaaacagacagttgaaacaagcaacca |
41471155 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 14 - 175
Target Start/End: Complemental strand, 41478202 - 41478043
Alignment:
| Q |
14 |
aatatgacaaattaactga--atgtaaaaagaaaatctggtcttttcatagacctgacctgatcctaccaa-ttttctcctaaaatgtaaaactttatga |
110 |
Q |
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| T |
41478202 |
aatatgacaaattaattaataatgtaaaaagaaaatcttttgttttcatagacctga-----ttctaccaaattttcaactaaaatgttaaacattatga |
41478108 |
T |
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| Q |
111 |
attaaaatcatcatctttggacacaaacaactgaatagctaatagatagtttagacaagcaacca |
175 |
Q |
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| T |
41478107 |
attaaaatcatcacctttggacacagacaacgggatagcaaacagacagttgaaacaagcaacca |
41478043 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 69 - 139
Target Start/End: Complemental strand, 40748892 - 40748822
Alignment:
| Q |
69 |
cctgatcctaccaattttctcctaaaatgtaaaactttatgaattaaaatcatcatctttggacacaaaca |
139 |
Q |
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| T |
40748892 |
cctgattctaccaattttgacataaaatgtaaaacattatgaattaaaatcataatctttggacacaaaca |
40748822 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 32 - 149
Target Start/End: Complemental strand, 40749570 - 40749453
Alignment:
| Q |
32 |
aatgtaaaaagaaaatctggtcttttcatagacctgacctgatcctaccaattttctcctaaaatgtaaaactttatgaattaaaatcatcatctttgga |
131 |
Q |
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||||||| |||||||| | ||||||| ||||||| |||||| ||| | |||| | ||||||||| ||| ||||| |||||||| ||| |||||||| |
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| T |
40749570 |
aatgtaagaagaaaatatattcttttcgtagacctcgcctgattctatcgatttgcacctaaaatgcgaaatattatgcattaaaatgatcgtctttgga |
40749471 |
T |
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| Q |
132 |
cacaaacaactgaatagc |
149 |
Q |
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| T |
40749470 |
cacaaacaactggatagc |
40749453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 87
Target Start/End: Original strand, 16412697 - 16412770
Alignment:
| Q |
16 |
tatgacaaattaactga--atgtaaaaagaaaatctggtcttttcatagacctgacctgatcctaccaattttc |
87 |
Q |
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| T |
16412697 |
tatgacaaattaactaataatgtaaaaagaaaagcttttgttttcatagacctaacctgattctaccaaatttc |
16412770 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 38 - 103
Target Start/End: Original strand, 16410499 - 16410564
Alignment:
| Q |
38 |
aaaagaaaatctggtcttttcatagacctgacctgatcctaccaattttctcctaaaatgtaaaac |
103 |
Q |
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| T |
16410499 |
aaaagaaaatctgtccttttcatagacatggcctgattataccaatttttacctaaaatgtgaaac |
16410564 |
T |
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