View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14409_low_4 (Length: 439)

Name: NF14409_low_4
Description: NF14409
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14409_low_4
NF14409_low_4
[»] chr3 (3 HSPs)
chr3 (243-421)||(51420906-51421084)
chr3 (243-360)||(51421562-51421678)
chr3 (271-337)||(49287770-49287838)
[»] chr1 (2 HSPs)
chr1 (243-421)||(38931953-38932131)
chr1 (243-360)||(38931359-38931475)
[»] chr5 (4 HSPs)
chr5 (109-239)||(38690555-38690685)
chr5 (126-206)||(38703425-38703507)
chr5 (278-326)||(32944404-32944452)
chr5 (266-298)||(38064839-38064871)
[»] chr8 (4 HSPs)
chr8 (243-344)||(13934955-13935056)
chr8 (243-360)||(37562340-37562456)
chr8 (289-368)||(37562938-37563017)
chr8 (273-301)||(1487662-1487690)
[»] chr2 (1 HSPs)
chr2 (271-355)||(4386088-4386173)
[»] chr4 (1 HSPs)
chr4 (278-326)||(33370795-33370843)
[»] chr7 (3 HSPs)
chr7 (278-326)||(32548591-32548641)
chr7 (271-323)||(35770357-35770411)
chr7 (266-298)||(8464465-8464497)


Alignment Details
Target: chr3 (Bit Score: 167; Significance: 3e-89; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 243 - 421
Target Start/End: Original strand, 51420906 - 51421084
Alignment:
Q  243 aagtcaattttaaccattagatctacaatcttatcatacactctcaacactatatttttgtcactatcttccactaccatctctttcattcatcctccac 342  Q
    |||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51420906 aagtcatttttaaccattagatctacaatcttgtcatacactctcaacactatatttttgtcactatcttccactaccatctctttcattcatcctccac 51421005  T
Q  343 aaacccataaccagcaactaatcaaaaccaccgtcccaactctttattgttaatttatttaatttcccttgtctctcct 421  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51421006 aaacccataaccagcaactcatcaaaaccaccgtcccaactctttattgttaatttatttaatttcccttgtctctcct 51421084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 243 - 360
Target Start/End: Complemental strand, 51421678 - 51421562
Alignment:
Q  243 aagtcaattttaaccattagatctacaatcttatcatacactctcaacactatatttttgtcactatcttccactaccatctctttcattcatcctccac 342  Q
    |||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| ||||    
T  51421678 aagtcaatttgaaccattaaatctacaatcttatcatacactctcaacactatatttttgtcactatcttccactaccatctctctccttcatcc-ccac 51421580  T
Q  343 aaacccataaccagcaac 360  Q
     ||||||  |||||||||    
T  51421579 caacccaccaccagcaac 51421562  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 271 - 337
Target Start/End: Original strand, 49287770 - 49287838
Alignment:
Q  271 tcttatcatacactctcaacactatatttt--tgtcactatcttccactaccatctctttcattcatcc 337  Q
    |||||||||||||||||||||| | |||||  |||||||||||||||| |||||| || || |||||||    
T  49287770 tcttatcatacactctcaacaccaaatttttttgtcactatcttccacaaccatcactctccttcatcc 49287838  T

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Target: chr1 (Bit Score: 167; Significance: 3e-89; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 243 - 421
Target Start/End: Complemental strand, 38932131 - 38931953
Alignment:
Q  243 aagtcaattttaaccattagatctacaatcttatcatacactctcaacactatatttttgtcactatcttccactaccatctctttcattcatcctccac 342  Q
    |||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38932131 aagtcatttttaaccattagatctacaatcttgtcatacactctcaacactatatttttgtcactatcttccactaccatctctttcattcatcctccac 38932032  T
Q  343 aaacccataaccagcaactaatcaaaaccaccgtcccaactctttattgttaatttatttaatttcccttgtctctcct 421  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38932031 aaacccataaccagcaactcatcaaaaccaccgtcccaactctttattgttaatttatttaatttcccttgtctctcct 38931953  T

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Target: chr1; HSP #2
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 243 - 360
Target Start/End: Original strand, 38931359 - 38931475
Alignment:
Q  243 aagtcaattttaaccattagatctacaatcttatcatacactctcaacactatatttttgtcactatcttccactaccatctctttcattcatcctccac 342  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| ||||    
T  38931359 aagtcaatttgaaccattagatctacaatcttatcatacactctcaacactatatttttgtcactatcttccactaccatctctctccttcatcc-ccac 38931457  T
Q  343 aaacccataaccagcaac 360  Q
     ||||||  |||||||||    
T  38931458 caacccaccaccagcaac 38931475  T

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Target: chr5 (Bit Score: 115; Significance: 3e-58; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 109 - 239
Target Start/End: Complemental strand, 38690685 - 38690555
Alignment:
Q  109 attagacgggattggataagaagaaaataatggtggtgtttggggtattttctcttgttcctctcaagttttttcttatgattttttcgtgcaacttacc 208  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  38690685 attaaacgggattggataagaagaaaataatggtggtgtttggggtattttctcttgttcctctcaagttttttcttatgattttttcgtgtaacttacc 38690586  T
Q  209 tgacctggtcttcgattttatagtcccaatc 239  Q
    |||| | ||||||||||||||||||||||||    
T  38690585 tgacatcgtcttcgattttatagtcccaatc 38690555  T

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Target: chr5; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 126 - 206
Target Start/End: Complemental strand, 38703507 - 38703425
Alignment:
Q  126 aagaagaaaataatggtggtgttt-ggggtattt-tctcttgttcctctcaagttttttcttatgattttttcgtgcaactta 206  Q
    |||||||||||||||||||||||| ||||| ||| ||||||||||||||||||||||||| ||||||||||||||| ||||||    
T  38703507 aagaagaaaataatggtggtgttttggggtgtttctctcttgttcctctcaagttttttcctatgattttttcgtgtaactta 38703425  T

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Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 278 - 326
Target Start/End: Complemental strand, 32944452 - 32944404
Alignment:
Q  278 atacactctcaacactatatttttgtcactatcttccactaccatctct 326  Q
    |||||| |||||||||| ||| |||||||||||||||||||||||||||    
T  32944452 atacaccctcaacactagattattgtcactatcttccactaccatctct 32944404  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 266 - 298
Target Start/End: Complemental strand, 38064871 - 38064839
Alignment:
Q  266 tacaatcttatcatacactctcaacactatatt 298  Q
    |||||||||||||||||||| ||||||||||||    
T  38064871 tacaatcttatcatacactcccaacactatatt 38064839  T

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Target: chr8 (Bit Score: 94; Significance: 1e-45; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 243 - 344
Target Start/End: Complemental strand, 13935056 - 13934955
Alignment:
Q  243 aagtcaattttaaccattagatctacaatcttatcatacactctcaacactatatttttgtcactatcttccactaccatctctttcattcatcctccac 342  Q
    |||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13935056 aagtcacttttaaccattagatctacaatcttgtcatacactctcaacactatatttttgtcactatcttccactaccatctctttcattcatcctccac 13934957  T
Q  343 aa 344  Q
    ||    
T  13934956 aa 13934955  T

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Target: chr8; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 243 - 360
Target Start/End: Original strand, 37562340 - 37562456
Alignment:
Q  243 aagtcaattttaaccattagatctacaatcttatcatacactctcaacactatatttttgtcactatcttccactaccatctctttcattcatcctccac 342  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| ||||    
T  37562340 aagtcaattttaaccattagatctacaatcttatcatacactctcaacactatatttttgtcactatcttccactaccatctctctccttcatcc-ccac 37562438  T
Q  343 aaacccataaccagcaac 360  Q
     ||||||  |||||||||    
T  37562439 caacccaccaccagcaac 37562456  T

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Target: chr8; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 289 - 368
Target Start/End: Complemental strand, 37563017 - 37562938
Alignment:
Q  289 acactatatttttgtcactatcttccactaccatctctttcattcatcctccacaaacccataaccagcaactaatcaaa 368  Q
    ||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||| |||||||| ||| ||||||    
T  37563017 acactatatttttgtcactatcttccgataccatctctttcattcatcctccacaaacccctaaccagcgactcatcaaa 37562938  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 273 - 301
Target Start/End: Original strand, 1487662 - 1487690
Alignment:
Q  273 ttatcatacactctcaacactatattttt 301  Q
    |||||||||||||||||||||||||||||    
T  1487662 ttatcatacactctcaacactatattttt 1487690  T

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Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 271 - 355
Target Start/End: Complemental strand, 4386173 - 4386088
Alignment:
Q  271 tcttatcatacactctcaacactata--tttttgtcactatcttccactaccatctctttcattcatcctccacaaacccataacca 355  Q
    |||||||||||||||||||||||| |  |||||||||||||||||||| |||||| || || ||||||| |||| ||||||| ||||    
T  4386173 tcttatcatacactctcaacactagaattttttgtcactatcttccacaaccatcactctccttcatcc-ccaccaacccatcacca 4386088  T

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Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 278 - 326
Target Start/End: Complemental strand, 33370843 - 33370795
Alignment:
Q  278 atacactctcaacactatatttttgtcactatcttccactaccatctct 326  Q
    |||||| |||||||||| ||| |||||||||||||||||||||||||||    
T  33370843 atacaccctcaacactagattattgtcactatcttccactaccatctct 33370795  T

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Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 278 - 326
Target Start/End: Complemental strand, 32548641 - 32548591
Alignment:
Q  278 atacactctcaacactatatt--tttgtcactatcttccactaccatctct 326  Q
    |||||| ||||||| ||||||  ||||||||||||||||||||||||||||    
T  32548641 atacaccctcaacattatattattttgtcactatcttccactaccatctct 32548591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 271 - 323
Target Start/End: Original strand, 35770357 - 35770411
Alignment:
Q  271 tcttatcatacactctcaacactata--tttttgtcactatcttccactaccatc 323  Q
    |||||||||||||||||||||| | |  |||||||||||||||||||| ||||||    
T  35770357 tcttatcatacactctcaacaccagaattttttgtcactatcttccacaaccatc 35770411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 266 - 298
Target Start/End: Original strand, 8464465 - 8464497
Alignment:
Q  266 tacaatcttatcatacactctcaacactatatt 298  Q
    |||||||||||||||||||| ||||||||||||    
T  8464465 tacaatcttatcatacactcccaacactatatt 8464497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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