View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14409_low_5 (Length: 420)
Name: NF14409_low_5
Description: NF14409
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14409_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 389; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 1 - 405
Target Start/End: Complemental strand, 43585868 - 43585464
Alignment:
| Q |
1 |
agctacaaaacaacctcgatcaaatcaaaaatcactagccaaaggtacatggtctgagggcatgaagacatagctatagatgacaccagccaaaccacca |
100 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43585868 |
agctacaaaacaacctcaatcaaatcaaaaatcactagccaaaggtacatggtctgagggcatgaagacatagctatagatgacaccagccaaaccacca |
43585769 |
T |
|
| Q |
101 |
ccaataagaggtccaacccaatagatccagttgttatggtagtcaccacttacaaccgcaggcccgaatgaacgtgccggattcattgacccaccagaga |
200 |
Q |
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| T |
43585768 |
ccaataagaggtccaacccaatagatccagttgttatggtagtcaccacttaaaactgcaggcccgaatgaacgtgccggattcattgacccaccagaga |
43585669 |
T |
|
| Q |
201 |
atggtcctgcagctaagatattggcaccaacaatcaaaccaatagcaattggtgcaattgtccctaatgaccctttcttaggatcagctgctgtggcata |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43585668 |
atggtcctgcagctaagatattggcaccaacaatcaaaccaatagcaattggtgcaattgtccctaatgaccctttcttaggatcagctgctgtggcata |
43585569 |
T |
|
| Q |
301 |
cactgtgtacaccaatccaaatgttatgataatctctgtcacaactccttcaccagctccaactccagaagcaacactgtggataggaattgtctgaaaa |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43585568 |
cactgtgtacaccaatccaaatgttatgataatctctgtcacaactccttcaccagctccaactccagaagcaacactgtggataggaattgtctgaaaa |
43585469 |
T |
|
| Q |
401 |
taaat |
405 |
Q |
| |
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|||| |
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| T |
43585468 |
caaat |
43585464 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 138; Significance: 5e-72; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 60 - 349
Target Start/End: Original strand, 4188994 - 4189283
Alignment:
| Q |
60 |
gcatgaagacatagctatagatgacaccagccaaaccaccaccaataagaggtccaacccaatagatccagttgttatggtagtcaccacttacaaccgc |
159 |
Q |
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| T |
4188994 |
gcatgaacacattgccatagataagcccagccaaaccaccaccaataagaggcccagcccaatagatccagttgtcatggaaatttccactaacaactgc |
4189093 |
T |
|
| Q |
160 |
aggcccgaatgaacgtgccggattcattgacccaccagagaatggtcctgcagctaagatattggcaccaacaatcaaaccaatagcaattggtgcaatt |
259 |
Q |
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|||||| || || | |||||| ||||||||||| ||||||||||| |||||||| || || |||||||||||||| |||||||| ||||| ||||||||| |
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| T |
4189094 |
aggcccaaaagatcttgccgggttcattgacccgccagagaatgggcctgcagccaatatgttggcaccaacaatgaaaccaatggcaatgggtgcaatt |
4189193 |
T |
|
| Q |
260 |
gtccctaatgaccctttcttaggatcagctgctgtggcatacactgtgtacaccaatccaaatgttatgataatctctgtcacaactcct |
349 |
Q |
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| T |
4189194 |
gtgcctattgaccctttctttggatcagctgctgtggcataaactgtgtataccaaaccaaatgttatgattatttcagtaacaactcct |
4189283 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 71; Significance: 5e-32; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 110 - 336
Target Start/End: Complemental strand, 3930207 - 3929981
Alignment:
| Q |
110 |
ggtccaacccaatagatccagttgttatggtagtcaccacttacaaccgcaggcccgaatgaacgtgccggattcattgacccaccagagaatggtcctg |
209 |
Q |
| |
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||||||||||||||||||||||| | | ||| ||||| || || || || |||||||| || ||||| |||||||| |||||| |||||| || | |
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| T |
3930207 |
ggtccaacccaatagatccagttatcagcaaagtttccactaaccacagctgggccgaatgagcgagccgggttcattgaaccaccactgaatggaccgg |
3930108 |
T |
|
| Q |
210 |
cagctaagatattggcaccaacaatcaaaccaatagcaattggtgcaattgtccctaatgaccctttcttaggatcagctgctgtggcatacactgtgta |
309 |
Q |
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| |||||||| |||||||| |||| || ||||||||||| ||||||||||| || | ||| || || || || ||||||||||||||||| || ||||| |
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| T |
3930107 |
cggctaagatgttggcaccgacaacgaacccaatagcaatgggtgcaattgttccaattgagccctttttggggtcagctgctgtggcataaacagtgta |
3930008 |
T |
|
| Q |
310 |
caccaatccaaatgttatgataatctc |
336 |
Q |
| |
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|||||||||||||||||||||||||| |
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| T |
3930007 |
aaccaatccaaatgttatgataatctc |
3929981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 210 - 324
Target Start/End: Complemental strand, 7656797 - 7656683
Alignment:
| Q |
210 |
cagctaagatattggcaccaacaatcaaaccaatagcaattggtgcaattgtccctaatgaccctttcttaggatcagctgctgtggcatacactgtgta |
309 |
Q |
| |
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||||||||||||| ||||||||||| | |||||| |||||||| ||||| | |||| |||||| || ||||| ||||||| ||||| |||||||| |
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| T |
7656797 |
cagctaagatatttgcaccaacaataacaccaattgcaattggagcaataattcctatattccctttttttggatctactgctgttgcataaactgtgta |
7656698 |
T |
|
| Q |
310 |
caccaatccaaatgt |
324 |
Q |
| |
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|||||||||||||| |
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| T |
7656697 |
taccaatccaaatgt |
7656683 |
T |
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