View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14409_low_7 (Length: 409)
Name: NF14409_low_7
Description: NF14409
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14409_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 361; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 15 - 391
Target Start/End: Complemental strand, 1350676 - 1350300
Alignment:
| Q |
15 |
tttattgaatttctatgaataagataagagtggaagaggaagggttgaatcttcaactgcaaatctcaccaataatatctattcaaataaaattgcctga |
114 |
Q |
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| T |
1350676 |
tttattgaatttctatgaataagataagagtggaagaggaagggttgaatcttcaactgcaaatctcaccaataatatctattcaaataaaattgcctga |
1350577 |
T |
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| Q |
115 |
gacttttaatatgatatatatgaatgaacataaattagcaatcaatatttatttattaattacaatatactaattgtgtcatatgatgtgctggactgga |
214 |
Q |
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| T |
1350576 |
gacttttaatatgatatatatgaatgaacataaattagcaatcaatatttatttattaattacaatatactaattgtgtcatatgatgtgctggactgga |
1350477 |
T |
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| Q |
215 |
ctttacctaccatctatttacatgtttatccacacacatatatgtatgtaataatgagctgaaaatatatattttttctttcattcttccagaaaaccag |
314 |
Q |
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| T |
1350476 |
ctttacctaccatctatttacatgtttatccacacacatatatgtatgtaataatgagctgaaaatatatattttttctttcattcttctagaaaaccag |
1350377 |
T |
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| Q |
315 |
taggtctgagaagacattttggtacttactaaactgattaactatgtagcattgagatgtgtttggtgtccgacatt |
391 |
Q |
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| T |
1350376 |
taggtctgagaagacattttggtacttactacactgattaactatgtagcactgagacgtgtttggtgtccgacatt |
1350300 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 51 - 100
Target Start/End: Complemental strand, 1353847 - 1353798
Alignment:
| Q |
51 |
aggaagggttgaatcttcaactgcaaatctcaccaataatatctattcaa |
100 |
Q |
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| T |
1353847 |
aggaaggattgaatcttcaattgcaaatctcaccaatcatatctattcaa |
1353798 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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