View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14409_low_8 (Length: 403)
Name: NF14409_low_8
Description: NF14409
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14409_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 308; Significance: 1e-173; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 19 - 393
Target Start/End: Original strand, 23379477 - 23379853
Alignment:
| Q |
19 |
gtatttggtaaacaaattttagcttcgtgctttatagtc-attggtcattgagtttgaatttccatcannnnnnn-gctgccactaaaagtctgtgccaa |
116 |
Q |
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||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||| ||||||||||||||| |||||||| |
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| T |
23379477 |
gtatttgctaaacaaattttagcttcgtgctttatagtccattggtcattgagtttgaattttcatcatattttttgctgccactaaaagtttgtgccaa |
23379576 |
T |
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| Q |
117 |
taacataatagtcattatggtgatgatgctcgtgtgtaccttcttagtacgagccttgaagcatttgagttttagcttggaaggaacaaatgatgtttat |
216 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23379577 |
taacataatagtcattattgtgatgatgctcgtgtgtaccttcttagtacgagccttgaagcatttgagttttagcttggaaggaacaaatgatgtttat |
23379676 |
T |
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| Q |
217 |
gtataagctatatgttcttagcacgacactagcactttgtgcatcaattgtttggtgatatatttctttgttgatatattagcttgacttttatttgtga |
316 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23379677 |
gtataagctatatgttctcagcacgacactagcactttgtgcatcaattgtttggtgatatatttctttgttgatatattagcttgacttttatttgtga |
23379776 |
T |
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| Q |
317 |
tggtcaagcaatgatattttgcttccaccttgagtggtttaccttatgacttttcgaatgttagcttctatcctatg |
393 |
Q |
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| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||| |
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| T |
23379777 |
tagtcaagcaatgatattttgcttccaccttgagtgatttaccttatgacttttcgaatgttcgcttctatcctatg |
23379853 |
T |
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