View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14411_high_11 (Length: 459)

Name: NF14411_high_11
Description: NF14411
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14411_high_11
NF14411_high_11
[»] chr8 (2 HSPs)
chr8 (275-444)||(9181992-9182161)
chr8 (275-444)||(11626112-11626281)
[»] chr6 (2 HSPs)
chr6 (275-444)||(10160216-10160385)
chr6 (285-435)||(16861901-16862051)
[»] chr1 (7 HSPs)
chr1 (279-444)||(50181491-50181656)
chr1 (288-436)||(27644626-27644774)
chr1 (285-440)||(44138391-44138546)
chr1 (282-444)||(51493029-51493191)
chr1 (285-442)||(12460046-12460203)
chr1 (285-325)||(13189706-13189746)
chr1 (399-443)||(20128409-20128453)
[»] chr7 (8 HSPs)
chr7 (276-444)||(12351998-12352166)
chr7 (276-444)||(41146405-41146573)
chr7 (275-437)||(29843261-29843423)
chr7 (285-444)||(46598459-46598618)
chr7 (285-444)||(31801142-31801301)
chr7 (276-436)||(43968699-43968859)
chr7 (304-444)||(512531-512671)
chr7 (292-435)||(18222759-18222902)
[»] chr5 (5 HSPs)
chr5 (276-444)||(23149920-23150088)
chr5 (276-436)||(13022190-13022350)
chr5 (276-436)||(13093714-13093874)
chr5 (294-444)||(42578025-42578175)
chr5 (352-440)||(7273748-7273836)
[»] chr4 (5 HSPs)
chr4 (276-444)||(32498197-32498365)
chr4 (1-147)||(1164176-1164324)
chr4 (285-408)||(23601377-23601500)
chr4 (2-57)||(1171504-1171559)
chr4 (375-436)||(33707464-33707525)
[»] chr3 (6 HSPs)
chr3 (276-444)||(2500476-2500643)
chr3 (279-421)||(6864369-6864511)
chr3 (373-436)||(4755718-4755781)
chr3 (282-444)||(52966116-52966278)
chr3 (378-436)||(2332392-2332450)
chr3 (279-316)||(39695667-39695704)
[»] scaffold0007 (1 HSPs)
scaffold0007 (285-444)||(189639-189794)
[»] chr2 (1 HSPs)
chr2 (399-444)||(4243154-4243199)
[»] scaffold0703 (1 HSPs)
scaffold0703 (285-435)||(945-1095)


Alignment Details
Target: chr8 (Bit Score: 170; Significance: 5e-91; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 170; E-Value: 5e-91
Query Start/End: Original strand, 275 - 444
Target Start/End: Complemental strand, 9182161 - 9181992
Alignment:
Q  275 ttttaacctctctatgcttggtaagcaaagttggaaactcttatccgactcaacctctttactatcaaggatcctcaaagctaaatactacccgcgaagg 374  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9182161 ttttaacctctctatgcttggtaagcaaagttggaaactcttatccgactcaacctctttactatcaaggatcctcaaagctaaatactacccgcgaagg 9182062  T
Q  375 gattttttggatgccaacctcggccataatccaagttatacatggaggagtctatggagtacacaatctt 444  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9182061 gattttttggatgccaacctcggccataatccaagttatacatggaggagtctatggagtacacaatctt 9181992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 170; E-Value: 5e-91
Query Start/End: Original strand, 275 - 444
Target Start/End: Original strand, 11626112 - 11626281
Alignment:
Q  275 ttttaacctctctatgcttggtaagcaaagttggaaactcttatccgactcaacctctttactatcaaggatcctcaaagctaaatactacccgcgaagg 374  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11626112 ttttaacctctctatgcttggtaagcaaagttggaaactcttatccgactcaacctctttactatcaaggatcctcaaagctaaatactacccgcgaagg 11626211  T
Q  375 gattttttggatgccaacctcggccataatccaagttatacatggaggagtctatggagtacacaatctt 444  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11626212 gattttttggatgccaacctcggccataatccaagttatacatggaggagtctatggagtacacaatctt 11626281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 170; Significance: 5e-91; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 170; E-Value: 5e-91
Query Start/End: Original strand, 275 - 444
Target Start/End: Complemental strand, 10160385 - 10160216
Alignment:
Q  275 ttttaacctctctatgcttggtaagcaaagttggaaactcttatccgactcaacctctttactatcaaggatcctcaaagctaaatactacccgcgaagg 374  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10160385 ttttaacctctctatgcttggtaagcaaagttggaaactcttatccgactcaacctctttactatcaaggatcctcaaagctaaatactacccgcgaagg 10160286  T
Q  375 gattttttggatgccaacctcggccataatccaagttatacatggaggagtctatggagtacacaatctt 444  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10160285 gattttttggatgccaacctcggccataatccaagttatacatggaggagtctatggagtacacaatctt 10160216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 285 - 435
Target Start/End: Original strand, 16861901 - 16862051
Alignment:
Q  285 tctatgcttggtaagcaaagttggaaactcttatccgactcaacctctttactatcaaggatcctcaaagctaaatactacccgcgaagggattttttgg 384  Q
    |||||||||||||||||||||||||||||| |  | |||||||  || |||||  |  |  |||||||||| ||||| | ||| ||| ||||||| ||||    
T  16861901 tctatgcttggtaagcaaagttggaaactcatgacagactcaaattccttacttactcgtgtcctcaaagccaaatatttccctcgacgggatttcttgg 16862000  T
Q  385 atgccaacctcggccataatccaagttatacatggaggagtctatggagta 435  Q
    | ||    || || ||||||||||| || |||||||||||||| |||||||    
T  16862001 aagcacctcttggtcataatccaagctacacatggaggagtctttggagta 16862051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 110; Significance: 3e-55; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 279 - 444
Target Start/End: Original strand, 50181491 - 50181656
Alignment:
Q  279 aacctctctatgcttggtaagcaaagttggaaactcttatccgactcaacctctttactatcaaggatcctcaaagctaaatactacccgcgaagggatt 378  Q
    ||||| |||||||| ||||||||||||||||||||  ||||||||||| ||||| || | |||||||||||||||||||||||||  || ||||||||||    
T  50181491 aacctttctatgctcggtaagcaaagttggaaacttctatccgactcatcctctctattctcaaggatcctcaaagctaaatactttccccgaagggatt 50181590  T
Q  379 ttttggatgccaacctcggccataatccaagttatacatggaggagtctatggagtacacaatctt 444  Q
    ||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| |||||||    
T  50181591 ttttggatgccaatctcggccacaatccaagttatacatggaggagtctatggagtacgcaatctt 50181656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 288 - 436
Target Start/End: Complemental strand, 27644774 - 27644626
Alignment:
Q  288 atgcttggtaagcaaagttggaaactcttatccgactcaacctctttactatcaaggatcctcaaagctaaatactacccgcgaagggattttttggatg 387  Q
    ||||||||||| |||||||||||||||||  ||||||| ||||| |||||  |  | ||||||||||| ||||| | |||||| |||||||| |||||||    
T  27644774 atgcttggtaaacaaagttggaaactcttgaccgactctacctccttacttactcgtatcctcaaagccaaatatttcccgcgtagggatttcttggatg 27644675  T
Q  388 ccaacctcggccataatccaagttatacatggaggagtctatggagtac 436  Q
    ||   || || ||||||||||| ||||| ||||||||||| ||||||||    
T  27644674 cctctcttggtcataatccaagctatacttggaggagtctttggagtac 27644626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 285 - 440
Target Start/End: Original strand, 44138391 - 44138546
Alignment:
Q  285 tctatgcttggtaagcaaagttggaaactcttatccgactcaacctctttactatcaaggatcctcaaagctaaatactacccgcgaagggattttttgg 384  Q
    |||||||||||||||||||||||||||||| | || || ||  | ||| ||||  || | || |||||||||||||| | ||||||||||||||| ||||    
T  44138391 tctatgcttggtaagcaaagttggaaactcctttcagattcgtcttctctacttacacgaattctcaaagctaaatatttcccgcgaagggatttcttgg 44138490  T
Q  385 atgccaacctcggccataatccaagttatacatggaggagtctatggagtacacaa 440  Q
    |||||   ||||||||||||||||| || || ||||| || ||||||||| |||||    
T  44138491 atgcccctctcggccataatccaagctacacctggagaagcctatggagtgcacaa 44138546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 282 - 444
Target Start/End: Complemental strand, 51493191 - 51493029
Alignment:
Q  282 ctctctatgcttggtaagcaaagttggaaactcttatccgactcaacctctttactatcaaggatcctcaaagctaaatactacccgcgaagggattttt 381  Q
    ||||| ||||| ||||||||||||||||||||| |  |||||||||  || |||||  |  |  |||||||||||||||||| |||  ||| |||||| |    
T  51493191 ctctcaatgctcggtaagcaaagttggaaactcctcaccgactcaaattccttacttactcgtgtcctcaaagctaaatacttccctagaatggatttct 51493092  T
Q  382 tggatgccaacctcggccataatccaagttatacatggaggagtctatggagtacacaatctt 444  Q
    ||||||||   || |||||||||||||| ||  |||||||| |||| ||||| || |||||||    
T  51493091 tggatgcccctcttggccataatccaagctacgcatggaggggtctttggagcactcaatctt 51493029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 285 - 442
Target Start/End: Complemental strand, 12460203 - 12460046
Alignment:
Q  285 tctatgcttggtaagcaaagttggaaactcttatccgactcaacctctttactatcaaggatcctcaaagctaaatactacccgcgaagggattttttgg 384  Q
    |||||||| ||||||||||||||||||||| |  | |||||||  || |||||  |  |  |||||||||| ||||| | ||| ||| ||||||| ||||    
T  12460203 tctatgctcggtaagcaaagttggaaactcatgacagactcaaattccttacttactcgtgtcctcaaagccaaatatttccctcgacgggatttcttgg 12460104  T
Q  385 atgccaacctcggccataatccaagttatacatggaggagtctatggagtacacaatc 442  Q
    | ||    || || ||||||||||| ||||||||||||||||| |||||||| |||||    
T  12460103 aagcacctcttggtcataatccaagctatacatggaggagtctttggagtacccaatc 12460046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 285 - 325
Target Start/End: Complemental strand, 13189746 - 13189706
Alignment:
Q  285 tctatgcttggtaagcaaagttggaaactcttatccgactc 325  Q
    ||||||||||||||| ||||||||||||||||| |||||||    
T  13189746 tctatgcttggtaagaaaagttggaaactcttaaccgactc 13189706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 399 - 443
Target Start/End: Original strand, 20128409 - 20128453
Alignment:
Q  399 cataatccaagttatacatggaggagtctatggagtacacaatct 443  Q
    ||||||||||| || || |||||||||||||||||||| ||||||    
T  20128409 cataatccaagctacacttggaggagtctatggagtacccaatct 20128453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 93; Significance: 4e-45; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 276 - 444
Target Start/End: Complemental strand, 12352166 - 12351998
Alignment:
Q  276 tttaacctctctatgcttggtaagcaaagttggaaactcttatccgactcaacctctttactatcaaggatcctcaaagctaaatactacccgcgaaggg 375  Q
    ||||| || |||||||| ||||||||||||||||||||||||||||||||  ||||  || | ||||| ||||||||||||||||| |  || |||||||    
T  12352166 tttaatctttctatgctcggtaagcaaagttggaaactcttatccgactcgtcctccctattttcaagaatcctcaaagctaaatattttccccgaaggg 12352067  T
Q  376 attttttggatgccaacctcggccataatccaagttatacatggaggagtctatggagtacacaatctt 444  Q
    |||||||||||||||| || || |||||||||||||| ||||||||||||||||||||||| |||||||    
T  12352066 attttttggatgccaatctaggtcataatccaagttacacatggaggagtctatggagtactcaatctt 12351998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 276 - 444
Target Start/End: Original strand, 41146405 - 41146573
Alignment:
Q  276 tttaacctctctatgcttggtaagcaaagttggaaactcttatccgactcaacctctttactatcaaggatcctcaaagctaaatactacccgcgaaggg 375  Q
    ||||| || |||||||| ||||||||||||||||||||||||||||||||  ||||  || | ||||| ||||||||||||||||| |  || |||||||    
T  41146405 tttaatctttctatgctcggtaagcaaagttggaaactcttatccgactcgtcctccctattttcaagaatcctcaaagctaaatattttccccgaaggg 41146504  T
Q  376 attttttggatgccaacctcggccataatccaagttatacatggaggagtctatggagtacacaatctt 444  Q
    |||||||||||||||| || || |||||||||||||| ||||||||||||||||||||||| |||||||    
T  41146505 attttttggatgccaatctaggtcataatccaagttacacatggaggagtctatggagtactcaatctt 41146573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 275 - 437
Target Start/End: Original strand, 29843261 - 29843423
Alignment:
Q  275 ttttaacctctctatgcttggtaagcaaagttggaaactcttatccgactcaacctctttactatcaaggatcctcaaagctaaatactacccgcgaagg 374  Q
    ||||||| | |||||  |||||||||||||||  |||||||||||||| ||||||||||||| |||||||||| |  |||||||||| |   || |||||    
T  29843261 ttttaacttttctatttttggtaagcaaagttaaaaactcttatccgagtcaacctctttaccatcaaggatcttggaagctaaatatttttcgagaagg 29843360  T
Q  375 gattttttggatgccaacctcggccataatccaagttatacatggaggagtctatggagtaca 437  Q
    |||||||||||||||||||| || |||||||||||||||||| |||| | | |||||||||||    
T  29843361 gattttttggatgccaacctaggtcataatccaagttatacaaggagcaatatatggagtaca 29843423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 285 - 444
Target Start/End: Original strand, 46598459 - 46598618
Alignment:
Q  285 tctatgcttggtaagcaaagttggaaactcttatccgactcaacctctttactatcaaggatcctcaaagctaaatactacccgcgaagggattttttgg 384  Q
    |||||||| || |||||| ||||||||||||||||||||||  |||||||| |  | || ||||||||||||||||||| |||  || |||| || ||||    
T  46598459 tctatgctcggcaagcaaggttggaaactcttatccgactcctcctctttattcaccagaatcctcaaagctaaatacttccctagacgggacttcttgg 46598558  T
Q  385 atgccaacctcggccataatccaagttatacatggaggagtctatggagtacacaatctt 444  Q
    |||| | |||||| ||||||||||| ||||| ||||||||  |||||||||| |||||||    
T  46598559 atgcaaccctcggtcataatccaagctatacctggaggagcttatggagtactcaatctt 46598618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 285 - 444
Target Start/End: Original strand, 31801142 - 31801301
Alignment:
Q  285 tctatgcttggtaagcaaagttggaaactcttatccgactcaacctctttactatcaaggatcctcaaagctaaatactacccgcgaagggattttttgg 384  Q
    |||||||| || |||||| ||||||||||||||||||||||  |||||||| |  | || ||||||||||||||||||| |||  ||  ||| || ||||    
T  31801142 tctatgctcggcaagcaaggttggaaactcttatccgactcctcctctttattcaccagaatcctcaaagctaaatacttccctagactggacttcttgg 31801241  T
Q  385 atgccaacctcggccataatccaagttatacatggaggagtctatggagtacacaatctt 444  Q
    |||| | |||||| ||||||||||| ||||| ||||||||  |||||||||| |||||||    
T  31801242 atgctaccctcggtcataatccaagctatacttggaggagcttatggagtactcaatctt 31801301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 276 - 436
Target Start/End: Original strand, 43968699 - 43968859
Alignment:
Q  276 tttaacctctctatgcttggtaagcaaagttggaaactcttatccgactcaacctctttactatcaaggatcctcaaagctaaatactacccgcgaaggg 375  Q
    ||||| || |||||||||||||||||||||| |||||||||  ||||||| ||||| |||||  |  |  ||||| |||| ||||||| ||| |||||||    
T  43968699 tttaatctatctatgcttggtaagcaaagtttgaaactcttgaccgactctacctccttacttactcgtgtcctcgaagccaaatacttcccacgaaggg 43968798  T
Q  376 attttttggatgccaacctcggccataatccaagttatacatggaggagtctatggagtac 436  Q
    |||| |||||||||  |||||| ||||||||||| | ||| || |||||||| ||||||||    
T  43968799 atttcttggatgcctccctcggtcataatccaagctttacttgaaggagtctttggagtac 43968859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 304 - 444
Target Start/End: Original strand, 512531 - 512671
Alignment:
Q  304 gttggaaactcttatccgactcaacctctttactatcaaggatcctcaaagctaaatactacccgcgaagggattttttggatgccaacctcggccataa 403  Q
    ||||||||||||||||||||||  |||||||| |  | || ||||||||||||||||||| |||  || |||| || |||||||| | |||||| |||||    
T  512531 gttggaaactcttatccgactcctcctctttattcaccagaatcctcaaagctaaatacttccctagacgggacttcttggatgcaaccctcggtcataa 512630  T
Q  404 tccaagttatacatggaggagtctatggagtacacaatctt 444  Q
    |||||| ||||| || |||||  |||||||||| |||||||    
T  512631 tccaagctatacctgaaggagcttatggagtactcaatctt 512671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 292 - 435
Target Start/End: Complemental strand, 18222902 - 18222759
Alignment:
Q  292 ttggtaagcaaagttggaaactcttatccgactcaacctctttactatcaaggatcctcaaagctaaatactacccgcgaagggattttttggatgccaa 391  Q
    |||||||||||||||| ||||||||  |||| || ||||  |||||  |  | ||||| ||||  ||||| | ||||||||||||||| |||||||||      
T  18222902 ttggtaagcaaagttgaaaactcttgaccgaatctacctgcttacttactcgtatcctgaaagtcaaatatttcccgcgaagggatttcttggatgcctc 18222803  T
Q  392 cctcggccataatccaagttatacatggaggagtctatggagta 435  Q
     ||||||||||||||||| ||||| ||||||||||| |||||||    
T  18222802 tctcggccataatccaagctatacttggaggagtctttggagta 18222759  T

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Target: chr5 (Bit Score: 93; Significance: 4e-45; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 276 - 444
Target Start/End: Original strand, 23149920 - 23150088
Alignment:
Q  276 tttaacctctctatgcttggtaagcaaagttggaaactcttatccgactcaacctctttactatcaaggatcctcaaagctaaatactacccgcgaaggg 375  Q
    ||||| || |||||||| ||||||||||||||||||||||||||||||||  ||||  || | ||||| ||||||||||||||||| |  || |||||||    
T  23149920 tttaatctttctatgctcggtaagcaaagttggaaactcttatccgactcgtcctccctattttcaagaatcctcaaagctaaatattttccccgaaggg 23150019  T
Q  376 attttttggatgccaacctcggccataatccaagttatacatggaggagtctatggagtacacaatctt 444  Q
    |||||||||||||||| || || |||||||||||||| ||||||||||||||||||||||| |||||||    
T  23150020 attttttggatgccaatctaggtcataatccaagttacacatggaggagtctatggagtactcaatctt 23150088  T

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Target: chr5; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 276 - 436
Target Start/End: Complemental strand, 13022350 - 13022190
Alignment:
Q  276 tttaacctctctatgcttggtaagcaaagttggaaactcttatccgactcaacctctttactatcaaggatcctcaaagctaaatactacccgcgaaggg 375  Q
    ||||| |||||||||||||||||||||||||||||||||||  ||||||| ||||| |||||  |  |  |||||||||  ||||||| ||| |||||||    
T  13022350 tttaatctctctatgcttggtaagcaaagttggaaactcttgaccgactctacctccttacttactcgtgtcctcaaagacaaatacttcccacgaaggg 13022251  T
Q  376 attttttggatgccaacctcggccataatccaagttatacatggaggagtctatggagtac 436  Q
    |||| |||||||||  |||||| ||||||||||| | ||| ||||||| ||| ||||||||    
T  13022250 atttcttggatgcctccctcggtcataatccaagctttacttggaggaatctttggagtac 13022190  T

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Target: chr5; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 276 - 436
Target Start/End: Complemental strand, 13093874 - 13093714
Alignment:
Q  276 tttaacctctctatgcttggtaagcaaagttggaaactcttatccgactcaacctctttactatcaaggatcctcaaagctaaatactacccgcgaaggg 375  Q
    ||||| |||||||||||||||||||||||||||||||||||  ||||||| ||||| |||||  |  |  |||||||||  |||||||  || |||||||    
T  13093874 tttaatctctctatgcttggtaagcaaagttggaaactcttgaccgactctacctccttacttactcgtgtcctcaaagacaaatactttccacgaaggg 13093775  T
Q  376 attttttggatgccaacctcggccataatccaagttatacatggaggagtctatggagtac 436  Q
    |||| |||||||||  |||||| ||||||||||| | ||| ||||||| ||| ||||||||    
T  13093774 atttcttggatgcctccctcggtcataatccaagctttacttggaggaatctttggagtac 13093714  T

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Target: chr5; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 294 - 444
Target Start/End: Complemental strand, 42578175 - 42578025
Alignment:
Q  294 ggtaagcaaagttggaaactcttatccgactcaacctctttactatcaaggatcctcaaagctaaatactacccgcgaagggattttttggatgccaacc 393  Q
    ||||||||||||||||||||| |  ||||||||| ||| |||||  |  |  ||||| |||||||||||| |||  |||||||||| |||||||||   |    
T  42578175 ggtaagcaaagttggaaactcctcaccgactcaaactccttacttactcgtgtcctcgaagctaaatacttccctagaagggatttcttggatgcccctc 42578076  T
Q  394 tcggccataatccaagttatacatggaggagtctatggagtacacaatctt 444  Q
    | |||||||||||||| || |||||||||||||| ||||| || |||||||    
T  42578075 ttggccataatccaagctacacatggaggagtctttggagcactcaatctt 42578025  T

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Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 352 - 440
Target Start/End: Original strand, 7273748 - 7273836
Alignment:
Q  352 aagctaaatactacccgcgaagggattttttggatgccaacctcggccataatccaagttatacatggaggagtctatggagtacacaa 440  Q
    |||| ||||| | ||| ||||||||||| |||||||||   ||||||||||||||||| || |||||||| || || ||||||||||||    
T  7273748 aagccaaatatttcccacgaagggatttcttggatgcctctctcggccataatccaagctacacatggagaagcctttggagtacacaa 7273836  T

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Target: chr4 (Bit Score: 93; Significance: 4e-45; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 276 - 444
Target Start/End: Original strand, 32498197 - 32498365
Alignment:
Q  276 tttaacctctctatgcttggtaagcaaagttggaaactcttatccgactcaacctctttactatcaaggatcctcaaagctaaatactacccgcgaaggg 375  Q
    ||||| || |||||||| ||||||||||||||||||||||||||||||||  ||||  || | ||||| ||||||||||||||||| |  || |||||||    
T  32498197 tttaatctttctatgctcggtaagcaaagttggaaactcttatccgactcgtcctccctattttcaagaatcctcaaagctaaatattttccccgaaggg 32498296  T
Q  376 attttttggatgccaacctcggccataatccaagttatacatggaggagtctatggagtacacaatctt 444  Q
    |||||||||||||||| || || |||||||||||||| ||||||||||||||||||||||| |||||||    
T  32498297 attttttggatgccaatctaggtcataatccaagttacacatggaggagtctatggagtactcaatctt 32498365  T

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Target: chr4; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 1 - 147
Target Start/End: Complemental strand, 1164324 - 1164176
Alignment:
Q  1 gtttgaaataagtatgaaaatgatagaacaagttgcatggagagtaggattgctcactggccgagttgagtctgtttggattataaaaatgt-ctatcta 99  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||| ||||||||||||| | ||| ||||||||   || ||    
T  1164324 gtttgaaataagtatgaaaatgatagaactagttgcatggagagtaggattgctcaccggccgggttgagtctgtttaggttaaaaaaatgtaggatata 1164225  T
Q  100 tcaaaatcgaaccaaactaatcc-gttgatgaacaagtattgaacttaa 147  Q
    ||| ||||||||||||| ||||| |||||||||||||||||||||||||    
T  1164224 tcacaatcgaaccaaaccaatcctgttgatgaacaagtattgaacttaa 1164176  T

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Target: chr4; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 285 - 408
Target Start/End: Complemental strand, 23601500 - 23601377
Alignment:
Q  285 tctatgcttggtaagcaaagttggaaactcttatccgactcaacctctttactatcaaggatcctcaaagctaaatactacccgcgaagggattttttgg 384  Q
    |||||| |||| ||| ||| ||||||| ||| ||  ||||| |||||| ||||  |  ||||||||||||||||||||| ||||||||||||||| ||||    
T  23601500 tctatgattggaaagaaaatttggaaaatctaatttgactccacctctctactcacctggatcctcaaagctaaatacttcccgcgaagggatttcttgg 23601401  T
Q  385 atgccaacctcggccataatccaa 408  Q
    ||| |||||| |||||||||||||    
T  23601400 atgtcaaccttggccataatccaa 23601377  T

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Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 2 - 57
Target Start/End: Complemental strand, 1171559 - 1171504
Alignment:
Q  2 tttgaaataagtatgaaaatgatagaacaagttgcatggagagtaggattgctcac 57  Q
    |||||||||||||||||||||||||||| ||||||||| |  ||||||||| ||||    
T  1171559 tttgaaataagtatgaaaatgatagaactagttgcatgaattgtaggattgttcac 1171504  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 375 - 436
Target Start/End: Original strand, 33707464 - 33707525
Alignment:
Q  375 gattttttggatgccaacctcggccataatccaagttatacatggaggagtctatggagtac 436  Q
    ||||| |||| |||||| || ||||| |||||||||||||| ||||||||||| || |||||    
T  33707464 gatttcttgggtgccaatcttggccacaatccaagttatacgtggaggagtctctgaagtac 33707525  T

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Target: chr3 (Bit Score: 85; Significance: 2e-40; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 276 - 444
Target Start/End: Complemental strand, 2500643 - 2500476
Alignment:
Q  276 tttaacctctctatgcttggtaagcaaagttggaaactcttatccgactcaacctctttactatcaaggatcctcaaagctaaatactacccgcgaaggg 375  Q
    ||||| || |||||||| ||||||||||||||||||||||||||||||||  ||||  || | ||||| |||| |||||||||||| |  || |||||||    
T  2500643 tttaatctttctatgctcggtaagcaaagttggaaactcttatccgactcgtcctccctattttcaagaatcc-caaagctaaatattttccccgaaggg 2500545  T
Q  376 attttttggatgccaacctcggccataatccaagttatacatggaggagtctatggagtacacaatctt 444  Q
    ||||||| |||||||| || ||||||||||||||||| ||||||||||||||||||||||| |||||||    
T  2500544 attttttagatgccaatctaggccataatccaagttacacatggaggagtctatggagtactcaatctt 2500476  T

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Target: chr3; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 279 - 421
Target Start/End: Original strand, 6864369 - 6864511
Alignment:
Q  279 aacctctctatgcttggtaagcaaagttggaaact-cttatccgactcaacctctttactatcaaggatcctcaaagctaaatactacccgcgaagggat 377  Q
    |||||||||||||||||||||||| | |||||||| || ||| ||||| ||||||||||   | ||  ||||||||| |||||| | ||| ||| |||||    
T  6864369 aacctctctatgcttggtaagcaacgctggaaacttctcatc-gactccacctctttacatgctagagtcctcaaagttaaatatttcccccgacgggat 6864467  T
Q  378 tttttggatgccaacctcggccataatccaagttatacatggag 421  Q
    ||||||||||||||||| ||||| |||||||| ||||| |||||    
T  6864468 tttttggatgccaaccttggccacaatccaagctatacgtggag 6864511  T

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Target: chr3; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 373 - 436
Target Start/End: Complemental strand, 4755781 - 4755718
Alignment:
Q  373 gggattttttggatgccaacctcggccataatccaagttatacatggaggagtctatggagtac 436  Q
    |||||||||||||||||||||| ||| |||||||||| ||||||||||||||||| ||||||||    
T  4755781 gggattttttggatgccaaccttggctataatccaagctatacatggaggagtctttggagtac 4755718  T

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Target: chr3; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 282 - 444
Target Start/End: Complemental strand, 52966278 - 52966116
Alignment:
Q  282 ctctctatgcttggtaagcaaagttggaaactcttatccgactcaacctctttactatcaaggatcctcaaagctaaatactacccgcgaagggattttt 381  Q
    ||||| ||||||| ||||||||||||||||||| |  |||||||||  || |||||  |  |  | ||| |||||||||||| |||  |||||||||| |    
T  52966278 ctctcaatgcttgttaagcaaagttggaaactcctcaccgactcaaattccttacttactcgtgttctctaagctaaatacttccctagaagggatttct 52966179  T
Q  382 tggatgccaacctcggccataatccaagttatacatggaggagtctatggagtacacaatctt 444  Q
    ||||||||   || |||||||||||||| || |||||||||||||| ||||| || |||||||    
T  52966178 tggatgcccctcttggccataatccaagctacacatggaggagtctttggagcactcaatctt 52966116  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 378 - 436
Target Start/End: Original strand, 2332392 - 2332450
Alignment:
Q  378 tttttggatgccaacctcggccataatccaagttatacatggaggagtctatggagtac 436  Q
    |||||||||| | | ||||| ||||||||||| ||||| ||||||||||| ||||||||    
T  2332392 tttttggatgtccatctcggtcataatccaagctatacttggaggagtctttggagtac 2332450  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 279 - 316
Target Start/End: Complemental strand, 39695704 - 39695667
Alignment:
Q  279 aacctctctatgcttggtaagcaaagttggaaactctt 316  Q
    ||||| |||||| |||||||||||||||||||||||||    
T  39695704 aacctatctatgtttggtaagcaaagttggaaactctt 39695667  T

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Target: scaffold0007 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 285 - 444
Target Start/End: Complemental strand, 189794 - 189639
Alignment:
Q  285 tctatgcttggtaagcaaagttggaaactcttatccgactcaacctctttactatcaaggatcctcaaagctaaatactacccgcgaagggattttttgg 384  Q
    |||||||||||||||||||| ||||| ||||||||    ||||||||| || |||||| ||||||||||  |||||| | ||||| | ||||||||| |     
T  189794 tctatgcttggtaagcaaaggtggaagctcttatc----tcaacctctctattatcaaagatcctcaaatttaaatatttcccgcaatgggatttttcgt 189699  T
Q  385 atgccaacctcggccataatccaagttatacatggaggagtctatggagtacacaatctt 444  Q
    ||||||| || || ||||||||||||| ||||||||||||||| | |||||| |||||||    
T  189698 atgccaatctaggacataatccaagttttacatggaggagtcttttgagtactcaatctt 189639  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 399 - 444
Target Start/End: Original strand, 4243154 - 4243199
Alignment:
Q  399 cataatccaagttatacatggaggagtctatggagtacacaatctt 444  Q
    ||||||||||| |||||||||||||||||||||||||| |||||||    
T  4243154 cataatccaagctatacatggaggagtctatggagtactcaatctt 4243199  T

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Target: scaffold0703 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0703
Description:

Target: scaffold0703; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 285 - 435
Target Start/End: Complemental strand, 1095 - 945
Alignment:
Q  285 tctatgcttggtaagcaaagttggaaactcttatccgactcaacctctttactatcaaggatcctcaaagctaaatactacccgcgaagggattttttgg 384  Q
    |||||||| ||||||||||||||||||||| |  | |||||||  || |||||  |  |  |||||||||| ||||| | ||| ||| ||||||| ||||    
T  1095 tctatgctcggtaagcaaagttggaaactcatgacagactcaaattccttacttactcgtgtcctcaaagccaaatatttccctcgacgggatttcttgg 996  T
Q  385 atgccaacctcggccataatccaagttatacatggaggagtctatggagta 435  Q
    | ||    || || ||||||||||| ||||||||||||||||| |||||||    
T  995 aagcacctcttggtcataatccaagctatacatggaggagtctttggagta 945  T

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