View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14411_high_13 (Length: 442)
Name: NF14411_high_13
Description: NF14411
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14411_high_13 |
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Alignment Details
Target: chr3 (Bit Score: 378; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 10 - 424
Target Start/End: Original strand, 38666050 - 38666472
Alignment:
| Q |
10 |
ataatacttgttgttttgccaataaaatgcacccttatgttacatgtgcttaattcaacaggttatccaaattggccttaactcttattagatataagca |
109 |
Q |
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| T |
38666050 |
ataatacttgttgttttgcgaataaaatgcacccttatgttacatatgcttaattcaaccggttatccaaattggccttaactcttattagctataagca |
38666149 |
T |
|
| Q |
110 |
catccaacattggtctaatctaacctaccacaattttcatctaaccttagtataca--------ctaaatgaacacataatcataatcacaacgtcatta |
201 |
Q |
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| T |
38666150 |
catccaacattggtctaatctaacctaccacaattttcatctaaccttagtatacacttctacactaaatgaacacataatcataatcacaacgtcatta |
38666249 |
T |
|
| Q |
202 |
tggcaacataacaaacctctttatcgacaagctcagtcttgttaagagcaagagtgagaggaatcccagtagactcagcttcaaccaaaaaccgtgttag |
301 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38666250 |
tggcaacataacaaacctctttatcgacaagctcagtcttgttaagagcaagagtgagaggaatcccagtagactcagcttcaaccaaaaaccgtgttag |
38666349 |
T |
|
| Q |
302 |
cgtaaaaggctcaagcttaggctgatcaagcgaaaacagaacaagcaaatgatccacattagccacaggaggatcaagcatttcagaatttctctgaaac |
401 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38666350 |
cgtaaaaggctcaagcttaggctgatcaagcgaaaacagaacaagcaaatgatccacattagccacaggaggatcaagcatttcagaatttctctgaaac |
38666449 |
T |
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| Q |
402 |
acattctcaatcatagccctacg |
424 |
Q |
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| T |
38666450 |
acattctcaatcatagccctacg |
38666472 |
T |
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