View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14411_high_14 (Length: 437)
Name: NF14411_high_14
Description: NF14411
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14411_high_14 |
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Alignment Details
Target: chr1 (Bit Score: 320; Significance: 1e-180; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 18 - 349
Target Start/End: Complemental strand, 50017035 - 50016705
Alignment:
| Q |
18 |
aatttcacatatatatttctaaaattgacatgaaaaatagtgaaatttcctaaacgaagctgaaaaacttgtacctcttctactccaattcaaatctctt |
117 |
Q |
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| T |
50017035 |
aatttcacatatatatttctaaaattgacatgaaaa-tagtgaaatttcctaaacgaagctgaaaaacttgtacctcttctactccaattcaaatctctt |
50016937 |
T |
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| Q |
118 |
tccatgtaatggaattggaatttgatttttgagattccagatatcatcatcccaaacaacatcattataaagagcattattaaaagcttcacccatgaaa |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50016936 |
tccatgtaatggaattggaatttgatttttgagattccagatatcatcttcccaaacaacatcattataaagagcattattaaaagcttcacccatgaaa |
50016837 |
T |
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| Q |
218 |
tccatatcccacccggggaaccaagttgaaccccatgacatttgttcatccacaacacctcccaaccatggcatatattcctcccaattccaattcacac |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50016836 |
tccatatcccacccggggaaccaagttgaaccccatgacatttgttcatccacaacacctcccaaccatggcatatattcctcccaattccaattcacac |
50016737 |
T |
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| Q |
318 |
cctcccttattgttgttgtaccctcacttatg |
349 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
50016736 |
cctcccttattgttgttgtaccctcacttatg |
50016705 |
T |
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