View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14411_high_18 (Length: 415)
Name: NF14411_high_18
Description: NF14411
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14411_high_18 |
 | |
|
| [»] scaffold0021 (1 HSPs) |
| | |
|
| [»] scaffold0402 (1 HSPs) |
| | |
|
| [»] scaffold0596 (1 HSPs) |
| | |
|
| [»] scaffold0634 (1 HSPs) |
| | |
|
| [»] scaffold0032 (2 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 367; Significance: 0; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 20 - 409
Target Start/End: Complemental strand, 11544294 - 11543904
Alignment:
| Q |
20 |
gacggtgtggaagaaggtttaatgcagtttgaatcgatgaaggagtatggaattgttccagggatggagcattatttgggagttgttaatattttcgggt |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11544294 |
gacggtgtggaagaaggtttaatgcagtttgaatcgatgaaggagtatggaattgttccagggatggagcattatttgggagttgttaatattttcgggt |
11544195 |
T |
|
| Q |
120 |
gtgctggtcggttggatgaagctcacgagtttattgagaatatgccaattgaagccggagttgagatttgggagactcttcgaaattttgcgacaatttg |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11544194 |
gtgctggtcggttggatgaagctcacgagtttattgagaatatgccaattgaagccggagttgagatttgggagactcttcgaaattttgcgacaatttg |
11544095 |
T |
|
| Q |
220 |
ttgtgctaaaaacacacttagagcaagtgtactctatcgcagaagtagtataaaagattatcgtat-cacagggattaattaacaagtaccaaactaatt |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||| |
|
|
| T |
11544094 |
ttgtgctaaaaacacacttagagcaagtgtactctatcgcagaagtagtataaaagattatcgtatccacagggattaattaacaagtatcaaactaatt |
11543995 |
T |
|
| Q |
319 |
aagattaatttattatttagacgaacaagtaatagaatggtttcggtaactaaagaaaaagtaatgaagaaggataaaaatgtgatgatgt |
409 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| |
|
|
| T |
11543994 |
aagattaatttattatttagacgaacaaataatagaatggtttcggtaactaaagaaaaagtaatgacgaaggataaaaatgtgaagatgt |
11543904 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 20 - 217
Target Start/End: Complemental strand, 34615462 - 34615265
Alignment:
| Q |
20 |
gacggtgtggaagaaggtttaatgcagtttgaatcgatgaaggagtatggaattgttccagggatggagcattatttgggagttgttaatattttcgggt |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34615462 |
gacggtgtggaagaaggtttaatgcagtttgaatcgatgaaggagtatggaattgttccagggatggagcattatttgggagttgttaatattttcgggt |
34615363 |
T |
|
| Q |
120 |
gtgctggtcggttggatgaagctcacgagtttattgagaatatgccaattgaagccggagttgagatttgggagactcttcgaaattttgcgacaatt |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||| |
|
|
| T |
34615362 |
gtgctggtcggttggatgaagctcacgagtttattgagaatatgccaattgaagccggagttgagctttgggagactcttcgaaattttgcgagaatt |
34615265 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 20 - 217
Target Start/End: Complemental strand, 34758010 - 34757814
Alignment:
| Q |
20 |
gacggtgtggaagaaggtttaatgcagtttgaatcgatgaaggagtatggaattgttccagggatggagcattatttgggagttgttaatattttcgggt |
119 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34758010 |
gacggtgtggaagaaggtttaatgca-tttgaatcgatgagggagtatggaattgttccagggatggagcattatttgggagttgttaatattttcgggt |
34757912 |
T |
|
| Q |
120 |
gtgctggtcggttggatgaagctcacgagtttattgagaatatgccaattgaagccggagttgagatttgggagactcttcgaaattttgcgacaatt |
217 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||| |
|
|
| T |
34757911 |
gtgctggtcggttgaatgaagctcacgagtttattgagaatatgccaattgaagccggagttgagatttgggagactctttgaaattttgcgagaatt |
34757814 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 20 - 218
Target Start/End: Complemental strand, 34742899 - 34742701
Alignment:
| Q |
20 |
gacggtgtggaagaaggtttaatgcagtttgaatcgatgaaggagtatggaattgttccagggatggagcattatttgggagttgttaatattttcgggt |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||| || | |
|
|
| T |
34742899 |
gacggtgtggaagaaggtttaatgcagtttgaatcgatgaaggagtatggaattgttccagggatggagcattatttgggggttgataatatttttggat |
34742800 |
T |
|
| Q |
120 |
gtgctggtcggttggatgaagctcacgagtttattgagaatatgccaattgaagccggagttgagatttgggagactcttcgaaattttgcgacaattt |
218 |
Q |
| |
|
||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| ||||| |
|
|
| T |
34742799 |
gtgctggtccgttggatgaagctcaggagtttattgagaatatgccaattgaagccggggttgatgtttgggagactcttcgaaattttgcgagaattt |
34742701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 158; E-Value: 6e-84
Query Start/End: Original strand, 218 - 409
Target Start/End: Original strand, 21431772 - 21431967
Alignment:
| Q |
218 |
tgttgtgctaaaaacacacttagagcaagtgtactctatcgcagaagtagtataaaagattatcgtatc-acagggattaattaacaagtaccaaactaa |
316 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||| |
|
|
| T |
21431772 |
tgttgcgctaaaaacacacttagagcaagtgtactctatcgcagaagtagtataaaagattatcgtatccacaaggattaattaacaagtaccaaactaa |
21431871 |
T |
|
| Q |
317 |
ttaagattaatttattatttagacgaacaagtaatagaatggtttcggtaactaaagaaaaagtaat---gaagaaggataaaaatgtgatgatgt |
409 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || ||||| |
|
|
| T |
21431872 |
ttaagattaatttattatttagacgaacaagtaatagaatggtttcggtaactaaagaaaaagtaatgacgaagaaggataaaaatgcgaagatgt |
21431967 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 218 - 398
Target Start/End: Original strand, 16139041 - 16139224
Alignment:
| Q |
218 |
tgttgtgctaaaaacacacttagagcaagtgtactctatcgcagaagtagtataaaagattatcgtat-cacagggattaattaacaagtaccaaactaa |
316 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| | ||| |||||||||||||||||||||||| |
|
|
| T |
16139041 |
tgttgcgctaaaaacacacttagagcaagtgtactctatcgcagaagtattataaaagattatcgtatccgcagagattaattaacaagtaccaaactac |
16139140 |
T |
|
| Q |
317 |
ttaagattaatttattatttagacgaacaagtaatagaatggtttcggtaactaaagaaaaagta---atgaagaaggataaaaa |
398 |
Q |
| |
|
|||||||| |||||||||||||| |||||| || | ||||||||||| ||||||| | |||||| | ||||||||||||||| |
|
|
| T |
16139141 |
ttaagatt-atttattatttagatgaacaactagttcaatggtttcggcaactaaatagaaagtaacgacgaagaaggataaaaa |
16139224 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 217 - 397
Target Start/End: Complemental strand, 10127849 - 10127670
Alignment:
| Q |
217 |
ttgttgtgctaaaaacacacttagagcaagtgtactctatcgcagaagtagtataaaagattatcgtat-cacagggattaattaacaagtaccaaacta |
315 |
Q |
| |
|
|||||| |||||||| | |||||||||||||||||||||| | | |||||||||| || ||||| ||| |||| ||||||||||| |||||||||||| |
|
|
| T |
10127849 |
ttgttgcgctaaaaatatacttagagcaagtgtactctattgtaaaagtagtatacaaaattataatatccacaaggattaattaaatagtaccaaacta |
10127750 |
T |
|
| Q |
316 |
attaagattaatttattatttagacgaacaagtaatagaatggtttcggtaactaaagaaaaagtaatgaagaaggataaaa |
397 |
Q |
| |
|
|||||||| ||||||||||||||| || || || | ||||||||| ||||| ||| | ||||||| |||||||||||||| |
|
|
| T |
10127749 |
gttaagatt-atttattatttagacaaataactagttgaatggtttttgtaacgaaatagaaagtaa-gaagaaggataaaa |
10127670 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 221 - 281
Target Start/End: Original strand, 1410246 - 1410306
Alignment:
| Q |
221 |
tgtgctaaaaacacacttagagcaagtgtactctatcgcagaagtagtataaaagattatc |
281 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||| |||||||| |||| || |||||| |
|
|
| T |
1410246 |
tgtgctaaaaacacacttagaaaaagtgtactctatttcagaagtattatacaatattatc |
1410306 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0021 (Bit Score: 175; Significance: 4e-94; HSPs: 1)
Name: scaffold0021
Description:
Target: scaffold0021; HSP #1
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 216 - 409
Target Start/End: Complemental strand, 120109 - 119915
Alignment:
| Q |
216 |
tttgttgtgctaaaaacacacttagagcaagtgtactctatcgcagaagtagtataaaagattatcgtatc-acagggattaattaacaagtaccaaact |
314 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
120109 |
tttgttgcgctaaaaacacacttagagcaagtgtactctatcgcagaagtagtataaaagattatcgtatccacagggattaattaacaagtaccaaact |
120010 |
T |
|
| Q |
315 |
aattaagattaatttattatttagacgaacaagtaatagaatggtttcggtaactaaagaaaaagtaatgaagaaggataaaaatgtgatgatgt |
409 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| |
|
|
| T |
120009 |
aattaagattaatttattatttagacgaacaagtaatagaatggtttcggtaactaaagaaaaagtaatgacgaaggataaaaatgtgaagatgt |
119915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 174; Significance: 2e-93; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 217 - 409
Target Start/End: Complemental strand, 10890600 - 10890407
Alignment:
| Q |
217 |
ttgttgtgctaaaaacacacttagagcaagtgtactctatcgcagaagtagtataaaagattatcgtatc-acagggattaattaacaagtaccaaacta |
315 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
10890600 |
ttgttgcgctaaaaacacacttagagcaagtgtactctatcgcagaagtagtataaaagattatcgtatccacagggattaattaacaagtaccaaacta |
10890501 |
T |
|
| Q |
316 |
attaagattaatttattatttagacgaacaagtaatagaatggtttcggtaactaaagaaaaagtaatgaagaaggataaaaatgtgatgatgt |
409 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| |
|
|
| T |
10890500 |
attaagattaatttattatttagacgaacaagtaatagaatggtttcggtaactaaagaaaaagtaatgacgaaggataaaaatgtgaagatgt |
10890407 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 225 - 382
Target Start/End: Complemental strand, 27612089 - 27611931
Alignment:
| Q |
225 |
ctaaaaacacacttagagcaagtgtactctatcgcagaagtagtataaaagattatcgtatc-acagggattaattaacaagtaccaaactaattaagat |
323 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| |||||||||||||| |
|
|
| T |
27612089 |
ctaaaaacacacttagagcaagtgtactctatcgcagaagtagtataaaagattatcgtatccacagggattaattagcaagtactaaactaattaagat |
27611990 |
T |
|
| Q |
324 |
taatttattatttagacgaacaagtaatagaatggtttcggtaactaaagaaaaagtaa |
382 |
Q |
| |
|
|||||||||||||||||||||||||| |||||| ||||||||||| || ||||||||| |
|
|
| T |
27611989 |
taatttattatttagacgaacaagtagtagaatagtttcggtaaccaagtaaaaagtaa |
27611931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 218 - 368
Target Start/End: Original strand, 22405822 - 22405973
Alignment:
| Q |
218 |
tgttgtgctaaaaacacacttagagcaagtgtactctatcgcagaagtagtataaaagattatcgtat-cacagggattaattaacaagtaccaaactaa |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| ||||||| |
|
|
| T |
22405822 |
tgttgtgctaaaaacacacttagagcaagtgtactctatcgcagaagtagtataaaagattatcgtatccacatggattaattaacaagtaataaactaa |
22405921 |
T |
|
| Q |
317 |
ttaagattaatttattatttagacgaacaagtaatagaatggtttcggtaac |
368 |
Q |
| |
|
||||||||||||||||||||||||||||||| | |||||| ||||||||||| |
|
|
| T |
22405922 |
ttaagattaatttattatttagacgaacaaggagtagaatagtttcggtaac |
22405973 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 217 - 368
Target Start/End: Original strand, 23164406 - 23164558
Alignment:
| Q |
217 |
ttgttgtgctaaaaacacacttagagcaagtgtactctatcgcagaagtagtataaaagattatcgtat-cacagggattaattaacaagtaccaaacta |
315 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||| |||||| ||||||||||| |
|
|
| T |
23164406 |
ttgttgcgctaaaaacacacttagagcaagtgtactctatcgcagaagtagtataaaagattatcgtatccacatggattatttaacacgtaccaaacta |
23164505 |
T |
|
| Q |
316 |
attaagattaatttattatttagacgaacaagtaatagaatggtttcggtaac |
368 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||| |||||| ||||||||||| |
|
|
| T |
23164506 |
attaagattaatttattatttagacgaaaaagtagtagaatagtttcggtaac |
23164558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 217 - 368
Target Start/End: Original strand, 23575663 - 23575815
Alignment:
| Q |
217 |
ttgttgtgctaaaaacacacttagagcaagtgtactctatcgcagaagtagtataaaagattatcgtat-cacagggattaattaacaagtaccaaacta |
315 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||| |||||| ||||||||||| |
|
|
| T |
23575663 |
ttgttgcgctaaaaacacacttagagcaagtgtactctatcgcagaagtagtataaaagattatcgtatccacatggattatttaacacgtaccaaacta |
23575762 |
T |
|
| Q |
316 |
attaagattaatttattatttagacgaacaagtaatagaatggtttcggtaac |
368 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||| |||||| ||||||||||| |
|
|
| T |
23575763 |
attaagattaatttattatttagacgaaaaagtagtagaatagtttcggtaac |
23575815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 289 - 382
Target Start/End: Complemental strand, 11010091 - 11009998
Alignment:
| Q |
289 |
agggattaattaacaagtaccaaactaattaagattaatttattatttagacgaacaagtaatagaatggtttcggtaactaaagaaaaagtaa |
382 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||| || ||||||||| |
|
|
| T |
11010091 |
agggattaattaacaagtactaaactaattaagattaatttattatttagacgaacaagtagtagaatagtttcggtaaccaagtaaaaagtaa |
11009998 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 225 - 395
Target Start/End: Original strand, 11767168 - 11767337
Alignment:
| Q |
225 |
ctaaaaacacacttagagcaagtgtactctatcgcagaagtagtataaaagattatcgtatcacagggattaattaacaagtaccaaactaattaagatt |
324 |
Q |
| |
|
||||||| ||||||||||||||||| ||||||| || || ||||| |||||||||||| || | |||||||||||||| ||||||||||||| ||| |
|
|
| T |
11767168 |
ctaaaaatacacttagagcaagtgtgctctatcacaagagaagtatgaaagattatcgtgtccaaaaaattaattaacaagttccaaactaattaatatt |
11767267 |
T |
|
| Q |
325 |
aatttattatttagacgaacaagtaatagaatggtttcggtaactaaagaaaaagtaatgaagaaggataa |
395 |
Q |
| |
|
||||||| |||||| ||| || || | ||||| || ||||||||| | |||||||||| |||| |||| |
|
|
| T |
11767268 |
-atttattgtttagatgaataaatatttgaatgactttggtaactaagtagaaagtaatgatgaagaataa |
11767337 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 157; Significance: 2e-83; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 218 - 400
Target Start/End: Original strand, 14276544 - 14276730
Alignment:
| Q |
218 |
tgttgtgctaaaaacacacttagagcaagtgtactctatcgcagaagtagtataaaagattatcgtatcac-agggattaattaacaagtaccaaactaa |
316 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||| |
|
|
| T |
14276544 |
tgttgcgctaaaaacacacttagagcaagtgtactctatcgcagaagtagtataaaagattatcgtatccccagggattaattaacaagtaccaaactaa |
14276643 |
T |
|
| Q |
317 |
ttaagattaatttattatttagacgaacaagtaatagaatggtttcggtaactaaagaaaaagtaat---gaagaaggataaaaatg |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
14276644 |
ttaagattaatttattatttagacgaacaagtaatagaatggtttcggtaactaaagaaaaagtaatgacgaagaaggataaaaatg |
14276730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 217 - 390
Target Start/End: Original strand, 37470194 - 37470367
Alignment:
| Q |
217 |
ttgttgtgctaaaaacacacttagagcaagtgtactctatcgcagaagtagtataaaagattatcgtat-cacagggattaattaacaagtaccaaacta |
315 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||| |||| |||||||||||||||||| |||||| |
|
|
| T |
37470194 |
ttgttgcgctaaaaacacacttagagcaagtgtactcaatcgcataagtagtataaaagattatcgtatccacatggattaattaacaagtactaaacta |
37470293 |
T |
|
| Q |
316 |
attaagattaatttattatttagacgaacaagtaatagaatggtttcggtaactaaagaaaaagtaatgaagaag |
390 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||| |||||| |||| ||||||||| |||||| ||||| |||| |
|
|
| T |
37470294 |
attaagattactttattatttagacgaacaagtagtagaat-gttttggtaactaagtaaaaagaaatgacgaag |
37470367 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 217 - 337
Target Start/End: Complemental strand, 11623753 - 11623631
Alignment:
| Q |
217 |
ttgttgtgctaaaaacacacttagagcaagtgtactctatcgcagaagtagtataaaagattatcgtat-cacagggattaattaacaagtaccaaacta |
315 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||| |||||||||| |||||| |||||| |
|
|
| T |
11623753 |
ttgttgcgctaaaaacacacttagagcaagtgtactctatcacagaagtagtataaaagattatcgtatccacagagattaattaataagtactaaacta |
11623654 |
T |
|
| Q |
316 |
attaaga-ttaatttattattta |
337 |
Q |
| |
|
||||||| ||||||||||||||| |
|
|
| T |
11623653 |
attaagatttaatttattattta |
11623631 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 275 - 368
Target Start/End: Complemental strand, 45279872 - 45279778
Alignment:
| Q |
275 |
gattatcgtatc-acagggattaattaacaagtaccaaactaattaagattaatttattatttagacgaacaagtaatagaatggtttcggtaac |
368 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||| |
|
|
| T |
45279872 |
gattatcgtatccacagggattaattaacaagtactaaactaattaagattaatttattatttagacgaacaagtagtagaatagtttcggtaac |
45279778 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 228 - 383
Target Start/End: Complemental strand, 1686354 - 1686199
Alignment:
| Q |
228 |
aaaacacacttagagcaagtgtactctatcgcagaagtagtataaaagattatcgtat-cacagggattaattaacaagtaccaaactaattaagattaa |
326 |
Q |
| |
|
||||||||| |||||||||| |||| |||| ||||||||| |||||||||||| ||| |||| ||| ||||||||||||| ||||||||||| ||| |
|
|
| T |
1686354 |
aaaacacacatagagcaagtatactatatcacagaagtagaataaaagattattttattcacaaggaataattaacaagtatacaactaattaaggtta- |
1686256 |
T |
|
| Q |
327 |
tttattatttagacgaacaagtaatagaatggtttcggtaactaaagaaaaagtaat |
383 |
Q |
| |
|
||||||||||||||||||||||| | |||||| ||||| ||||||| |||||||||| |
|
|
| T |
1686255 |
tttattatttagacgaacaagtagttgaatggcttcggaaactaaataaaaagtaat |
1686199 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 216 - 251
Target Start/End: Complemental strand, 45279913 - 45279878
Alignment:
| Q |
216 |
tttgttgtgctaaaaacacacttagagcaagtgtac |
251 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||| |
|
|
| T |
45279913 |
tttgttgcgctaaaaacacacttagagcaagtgtac |
45279878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0402 (Bit Score: 154; Significance: 1e-81; HSPs: 1)
Name: scaffold0402
Description:
Target: scaffold0402; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 218 - 409
Target Start/End: Original strand, 7577 - 7772
Alignment:
| Q |
218 |
tgttgtgctaaaaacacacttagagcaagtgtactctatcgcagaagtagtataaaagattatcgtatc-acagggattaattaacaagtaccaaactaa |
316 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| |||||||||||||| |
|
|
| T |
7577 |
tgttgcgctaaaaacacacttagagcaagtgtactctatcgcagaagtagtataaaagattatcgtatccacaaggattaattaaaaagtaccaaactaa |
7676 |
T |
|
| Q |
317 |
ttaagattaatttattatttagacgaacaagtaatagaatggtttcggtaactaaagaaaaagtaat---gaagaaggataaaaatgtgatgatgt |
409 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || ||||| |
|
|
| T |
7677 |
ttaagattaatttattatttagacgaacaagtaatagaatggtttcggtaactaaagaaaaagtaatgacgaagaaggataaaaatgcgaagatgt |
7772 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0596 (Bit Score: 142; Significance: 2e-74; HSPs: 1)
Name: scaffold0596
Description:
Target: scaffold0596; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 218 - 409
Target Start/End: Original strand, 3728 - 3923
Alignment:
| Q |
218 |
tgttgtgctaaaaacacacttagagcaagtgtactctatcgcagaagtagtataaaagattatcgtatc-acagggattaattaacaagtaccaaactaa |
316 |
Q |
| |
|
||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||| |
|
|
| T |
3728 |
tgttgcgctaaaaacacacttatagcaagtgtactctatcgcagaagtagtataaaagattatcgtatccacagggattaatttacaagtaccaaactaa |
3827 |
T |
|
| Q |
317 |
ttaagattaatttattatttagacgaacaagtaatagaatggtttcggtaactaaagaaaaagtaat---gaagaaggataaaaatgtgatgatgt |
409 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| ||||||||||||||||| || ||||| |
|
|
| T |
3828 |
ttaagattaatttattatttagacgaacaagtaatagaatggttttagtaaccaaagaaaaagtaatgacgaagaaggataaaaatgcgaagatgt |
3923 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 127; Significance: 2e-65; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 217 - 382
Target Start/End: Complemental strand, 31962764 - 31962598
Alignment:
| Q |
217 |
ttgttgtgctaaaaacacacttagagcaagtgtactctatcgcagaagtagtataaaagattatcgtatc-acagggattaattaacaagtaccaaacta |
315 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| |||||| |
|
|
| T |
31962764 |
ttgttgcgctaaaaacacacttagagcaagtgtactctatcgcagaagtagtataaaagattatcgtatccacagggattaattagcaagtactaaacta |
31962665 |
T |
|
| Q |
316 |
attaagattaatttattatttagacgaacaagtaatagaatggtttcggtaactaaagaaaaagtaa |
382 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||| ||||||||||| || ||||||||| |
|
|
| T |
31962664 |
attaagattaatttattatttagacgaacaagtagtagaatagtttcggtaaccaagtaaaaagtaa |
31962598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 240 - 385
Target Start/End: Original strand, 10889318 - 10889458
Alignment:
| Q |
240 |
gagcaagtgtactctatcgcagaagtagtataaaagattatcgtatca-cagggattaattaacaagtaccaaactaattaagattaatttattatttag |
338 |
Q |
| |
|
||||||| ||||||||||| |||||||| ||||||||| ||||| || ||||| |||||||||||| |||||||||||||||| |||||||||||| |
|
|
| T |
10889318 |
gagcaagggtactctatcgtagaagtag-----aagattatcatatcaacaaggattcattaacaagtactaaactaattaagatta-tttattatttag |
10889411 |
T |
|
| Q |
339 |
acgaacaagtaatagaatggtttcggtaactaaagaaaaagtaatga |
385 |
Q |
| |
|
||| ||||||| ||||||| |||| |||||| || |||||||||||| |
|
|
| T |
10889412 |
acggacaagtattagaatgatttcagtaactgaataaaaagtaatga |
10889458 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 217 - 263
Target Start/End: Complemental strand, 23616795 - 23616749
Alignment:
| Q |
217 |
ttgttgtgctaaaaacacacttagagcaagtgtactctatcgcagaa |
263 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23616795 |
ttgttgtgctaaaaacacacttagagcaagtgtactctatcgcagaa |
23616749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 217 - 280
Target Start/End: Original strand, 22799085 - 22799148
Alignment:
| Q |
217 |
ttgttgtgctaaaaacacacttagagcaagtgtactctatcgcagaagtagtataaaagattat |
280 |
Q |
| |
|
|||||||||||||||| |||||||| |||||| || ||||||| |||| |||||||||||||| |
|
|
| T |
22799085 |
ttgttgtgctaaaaactcacttagatcaagtgccctttatcgcataagtggtataaaagattat |
22799148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 322 - 382
Target Start/End: Complemental strand, 23616730 - 23616670
Alignment:
| Q |
322 |
attaatttattatttagacgaacaagtaatagaatggtttcggtaactaaagaaaaagtaa |
382 |
Q |
| |
|
||||||||||||||||||||| |||||| |||||| |||||| |||| || ||||||||| |
|
|
| T |
23616730 |
attaatttattatttagacgaccaagtagtagaatagtttcgataaccaagtaaaaagtaa |
23616670 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0634 (Bit Score: 117; Significance: 2e-59; HSPs: 1)
Name: scaffold0634
Description:
Target: scaffold0634; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 217 - 368
Target Start/End: Complemental strand, 4115 - 3963
Alignment:
| Q |
217 |
ttgttgtgctaaaaacacacttagagcaagtgtactctatcgcagaagtagtataaaagattatcgtat-cacagggattaattaacaagtaccaaacta |
315 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||| |||||| ||||||||||| |
|
|
| T |
4115 |
ttgttgcgctaaaaacacacttagagcaagtgtactctatcgcagaagtagtataaaagattatcgtatccacatggattatttaacacgtaccaaacta |
4016 |
T |
|
| Q |
316 |
attaagattaatttattatttagacgaacaagtaatagaatggtttcggtaac |
368 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||| |||||| ||||||||||| |
|
|
| T |
4015 |
attaagattaatttattatttagacgaaaaagtagtagaatagtttcggtaac |
3963 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0032 (Bit Score: 114; Significance: 1e-57; HSPs: 2)
Name: scaffold0032
Description:
Target: scaffold0032; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 224 - 376
Target Start/End: Complemental strand, 22380 - 22228
Alignment:
| Q |
224 |
gctaaaaacacacttagagcaagtgtactctatcgcagaagtagtataaaagattatcgtat-cacagggattaattaacaagtaccaaactaattaaga |
322 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
22380 |
gctaaaaacacacttagagcaagtgtactctatcgcagaagtagtataaaagattatcgtatccacagggattaattaacaagtactaaactaattaaga |
22281 |
T |
|
| Q |
323 |
ttaatttattatttagacgaacaagtaatagaatggtttcggtaactaaagaaa |
376 |
Q |
| |
|
|| |||||||||||||||||||||||| || |||||||||| |||||||||| |
|
|
| T |
22280 |
tt-atttattatttagacgaacaagtagatgagtggtttcggtcactaaagaaa |
22228 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0032; HSP #2
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 216 - 314
Target Start/End: Complemental strand, 29277 - 29178
Alignment:
| Q |
216 |
tttgttgtgctaaaaacacacttagagcaagtgtactctatcgcagaagtagtataaaagattatcgtat-cacagggattaattaacaagtaccaaact |
314 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| |
|
|
| T |
29277 |
tttgttgcgctaaaaacacacttagagcaagtgtactctatcgcagaagtagtataaaagattatcgtatccacagggattaattaacaagtactaaact |
29178 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 93; Significance: 4e-45; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 241 - 376
Target Start/End: Complemental strand, 17342863 - 17342728
Alignment:
| Q |
241 |
agcaagtgtactctatcgcagaagtagtataaaagattatcgtat-cacagggattaattaacaagtaccaaactaattaagattaatttattatttaga |
339 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||| ||||||||||||||| |||||||||||||| |
|
|
| T |
17342863 |
agcaagtgtactctatcgcagaagtagtataaaagattatcgtatccacaaggattaattaacaagtactaaactaattaagatt-atttattatttaga |
17342765 |
T |
|
| Q |
340 |
cgaacaagtaatagaatggtttcggtaactaaagaaa |
376 |
Q |
| |
|
|||||||||| || |||||| |||||||||||||| |
|
|
| T |
17342764 |
cgaacaagtagatgagtggttttggtaactaaagaaa |
17342728 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 263 - 409
Target Start/End: Original strand, 13812689 - 13812839
Alignment:
| Q |
263 |
agtagtataaaagattatcgtatc-acagggattaattaacaagtaccaaactaattaagattaatttattatttagacgaacaagtaatagaatggttt |
361 |
Q |
| |
|
|||||||||||||||||||||||| |||| | ||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||| |||| |
|
|
| T |
13812689 |
agtagtataaaagattatcgtatccacagaggttaattaacaagtactaaactaattaagattaatttattatttagacgaacaagtagtagaatagttt |
13812788 |
T |
|
| Q |
362 |
cggtaactaaagaaaaagta---atgaagaaggataaaaatgtgatgatgt |
409 |
Q |
| |
|
||||||| || |||||||| | |||||||||||||| ||||| ||||| |
|
|
| T |
13812789 |
cggtaaccaagtaaaaagtaacgacgaagaaggataaaactgtgaagatgt |
13812839 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 78; Significance: 3e-36; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 217 - 390
Target Start/End: Complemental strand, 26116110 - 26115950
Alignment:
| Q |
217 |
ttgttgtgctaaaaacacacttagagcaagtgtactctatcgcagaagtagtataaaagattatcgtatcacagggattaattaacaagtaccaaactaa |
316 |
Q |
| |
|
|||||| ||||||||||||| || |||||||||||||||||||| ||||||||||||||||||| |||||| |||||||| ||||||| |
|
|
| T |
26116110 |
ttgttgcgctaaaaacacacctaaagcaagtgtactctatcgcataagtagtataaaagattattgtatca-------------acaagtactaaactaa |
26116024 |
T |
|
| Q |
317 |
ttaagattaatttattatttagacgaacaagtaatagaatggtttcggtaactaaagaaaaagtaatgaagaag |
390 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||| ||||||||||| || ||||||| |||| |||| |
|
|
| T |
26116023 |
ttaagattaatttattatttagacgaacaagtagtagaatagtttcggtaaccaagtaaaaagtgatgacgaag |
26115950 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 236 - 279
Target Start/End: Complemental strand, 7705912 - 7705869
Alignment:
| Q |
236 |
cttagagcaagtgtactctatcgcagaagtagtataaaagatta |
279 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
7705912 |
cttagagcaagtgtactctattgcagaagtagtataaaagatta |
7705869 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 216 - 252
Target Start/End: Original strand, 22733255 - 22733291
Alignment:
| Q |
216 |
tttgttgtgctaaaaacacacttagagcaagtgtact |
252 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||| |
|
|
| T |
22733255 |
tttgttgtgctaaaaacacactcagagcaagtgtact |
22733291 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 235 - 399
Target Start/End: Original strand, 48179989 - 48180155
Alignment:
| Q |
235 |
acttagagcaagtgtactctatcgcagaagtagtataaaagattatcgtat-cacagggattaattaacaagtaccaaactaattaagattaatttatta |
333 |
Q |
| |
|
||||| || |||||||||||||| | |||||||||||||||||||||||| |||| ||||||||||||| || |||||||||||||||| |||||||| |
|
|
| T |
48179989 |
acttacagtaagtgtactctatcataaaagtagtataaaagattatcgtatccacattgattaattaacaaatatcaaactaattaagatt-atttatta |
48180087 |
T |
|
| Q |
334 |
tttagacgaacaagtaatagaatggtttcggtaactaaagaaaaagtaatg---aagaaggataaaaat |
399 |
Q |
| |
|
|| | ||||||||| | ||||||| ||||| ||||| || |||||||||| ||||||||||||||| |
|
|
| T |
48180088 |
ttcaaacgaacaagcattagaatgatttcgataact-gagtaaaagtaatgacaaagaaggataaaaat |
48180155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University