View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14411_high_20 (Length: 411)

Name: NF14411_high_20
Description: NF14411
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14411_high_20
NF14411_high_20
[»] chr4 (4 HSPs)
chr4 (7-396)||(29438532-29438913)
chr4 (10-133)||(13066760-13066884)
chr4 (40-133)||(19602905-19602998)
chr4 (66-106)||(9575852-9575892)
[»] chr1 (2 HSPs)
chr1 (13-133)||(25664851-25664971)
chr1 (11-135)||(25132666-25132790)
[»] chr5 (3 HSPs)
chr5 (76-132)||(24518198-24518254)
chr5 (40-133)||(18281091-18281184)
chr5 (11-133)||(20695869-20695989)
[»] chr2 (1 HSPs)
chr2 (49-185)||(27916881-27917012)
[»] chr7 (1 HSPs)
chr7 (49-135)||(21536438-21536523)
[»] scaffold0011 (1 HSPs)
scaffold0011 (18-95)||(227109-227188)
[»] chr8 (1 HSPs)
chr8 (49-133)||(27117455-27117538)


Alignment Details
Target: chr4 (Bit Score: 316; Significance: 1e-178; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 7 - 396
Target Start/End: Original strand, 29438532 - 29438913
Alignment:
Q  7 cgtcaggacaattaaaaccctgtgaccactttaaatctcttattttatttgttttactaaatagattccgctaattatcgagttgaacgagaatctctat 106  Q
    ||||| ||||||||||||||||  ||||||||||||||||||||||||||| ||||||||||||||||| |||||||  |||||||||||||||||||||    
T  29438532 cgtcaagacaattaaaaccctgctaccactttaaatctcttattttatttgctttactaaatagattccactaattacagagttgaacgagaatctctat 29438631  T
Q  107 ggtgacgattaacttgctactttattattacttggtaagtttgatgcacttgctaattaattcactaaaatcaccatcacacaactgccctttattagtg 206  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||     ||||||||||||||||||||||||||| ||||||||||||||    
T  29438632 ggtgacgattaacttgctactttattattacttggtaagtttgatgcacttgc----caattcactaaaatcaccatcacacaaccgccctttattagtg 29438727  T
Q  207 tagatgtgtctgtcatcttcatcatacacatgcgtaggacacacatcaacaatcagcataaagaggtgtcgcttcaattgtgcattcttgtaatgccaac 306  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29438728 tagatgtgtctgtcatcttcatcatacacatgcgtaagacacacatcaacaatcagcataaagaggtgtcgcttcaattgtgcattcttgtaatgccaac 29438827  T
Q  307 aacccatactcagaggaatctactttcagggatatatatacaactgaacgacatcaagcaaccttccatccacgaccttggagtggtttc 396  Q
    |||||||||||||||||||||||||||||||    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29438828 aacccatactcagaggaatctactttcaggg----atatacaactgaacgacatcaagcaaccttccatccacgaccttggagtggtttc 29438913  T

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Target: chr4; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 10 - 133
Target Start/End: Original strand, 13066760 - 13066884
Alignment:
Q  10 caggacaattaaaaccctgtgaccact-ttaaatctcttattttatttgttttactaaatagattccgctaattatcgagttgaacgagaatctctatgg 108  Q
    |||||||||||||||||||  | |||| |||||||| ||  |||||||||||| ||||| | ||| | |||||||| ||||||||||| ||||||| | |    
T  13066760 caggacaattaaaaccctgcaatcactcttaaatcttttcctttatttgtttttctaaacatattaccctaattatggagttgaacgaaaatctctgttg 13066859  T
Q  109 tgacgattaacttgctactttatta 133  Q
     |||||||||||| |||||||||||    
T  13066860 agacgattaacttactactttatta 13066884  T

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Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 40 - 133
Target Start/End: Original strand, 19602905 - 19602998
Alignment:
Q  40 aatctcttattttatttgttttactaaatagattccgctaattatcgagttgaacgagaatctctatggtgacgattaacttgctactttatta 133  Q
    |||||||| ||||||||| ||| |||||||  ||| |||||||| |||||||||||| |||| || ||| |||||||||||| || ||||||||    
T  19602905 aatctcttcttttatttgcttttctaaataagttcagctaattaccgagttgaacgataatccctgtggagacgattaacttactgctttatta 19602998  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 66 - 106
Target Start/End: Original strand, 9575852 - 9575892
Alignment:
Q  66 aatagattccgctaattatcgagttgaacgagaatctctat 106  Q
    |||| ||||||||||||||| |||||||||| |||||||||    
T  9575852 aatatattccgctaattatcaagttgaacgacaatctctat 9575892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 54; Significance: 7e-22; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 13 - 133
Target Start/End: Complemental strand, 25664971 - 25664851
Alignment:
Q  13 gacaattaaaaccctgtgaccacttt-aaatctcttattttatttgttttactaaatagattccgctaattatcgagttgaacgagaatctctatggtga 111  Q
    ||||||||||||||| | ||||| || |||||| |||||||||||| || |||||||||||| ||||||||| |||||||||||| |||| |||| | ||    
T  25664971 gacaattaaaaccctataaccaccttcaaatcttttattttatttgctt-actaaatagatttcgctaattaccgagttgaacgacaatccctatcgaga 25664873  T
Q  112 cgattaacttgctactttatta 133  Q
     ||||||||| |||||||||||    
T  25664872 tgattaacttactactttatta 25664851  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 11 - 135
Target Start/End: Complemental strand, 25132790 - 25132666
Alignment:
Q  11 aggacaattaaaaccctgtgaccactttaaatctcttattttatttgttttactaaatagattccgctaattatcgagttgaacgagaatctctatggtg 110  Q
    |||||||||||||| |||  | ||||| ||||||  | ||||||||| ||| ||||| ||||||||||| || ||||||||||||| ||||  | ||| |    
T  25132790 aggacaattaaaactctgcaatcacttcaaatcttctcttttatttgcttttctaaaaagattccgctagttgtcgagttgaacgacaatccatgtggag 25132691  T
Q  111 acgattaacttgctactttattatt 135  Q
    | |||||||||  || |||||||||    
T  25132690 atgattaacttattaatttattatt 25132666  T

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Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 76 - 132
Target Start/End: Original strand, 24518198 - 24518254
Alignment:
Q  76 gctaattatcgagttgaacgagaatctctatggtgacgattaacttgctactttatt 132  Q
    ||||||||||||||||||||| |||| |||||| |||||| ||||| ||||||||||    
T  24518198 gctaattatcgagttgaacgacaatccctatggagacgataaacttactactttatt 24518254  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 40 - 133
Target Start/End: Complemental strand, 18281184 - 18281091
Alignment:
Q  40 aatctcttattttatttgttttactaaatagattccgctaattatcgagttgaacgagaatctctatggtgacgattaacttgctactttatta 133  Q
    ||||| || ||||||||  ||| ||||||||||||| ||||||| |||||||||||| ||| | | ||  |||||||||||| || ||||||||    
T  18281184 aatcttttcttttatttacttttctaaatagattccactaattaccgagttgaacgaaaatttgtgtgaagacgattaacttactgctttatta 18281091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 11 - 133
Target Start/End: Original strand, 20695869 - 20695989
Alignment:
Q  11 aggacaattaaaaccctgtgaccacttt-aaatctcttattttatttgttttactaaatagattccgctaattatcgagttgaacgagaatctctatggt 109  Q
    ||||||||||||||  ||  |||||||| ||||||||| ||||||||  |||   ||||| |||||  |||||| |||||||||||| |||| || |||     
T  20695869 aggacaattaaaactttgcaaccacttttaaatctcttcttttatttactttc--aaataaattcctataattaccgagttgaacgacaatccctgtgga 20695966  T
Q  110 gacgattaacttgctactttatta 133  Q
    ||||| |||||| |||||||||||    
T  20695967 gacga-taacttactactttatta 20695989  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 49 - 185
Target Start/End: Complemental strand, 27917012 - 27916881
Alignment:
Q  49 ttttatttgttttactaaatagattccgctaattatcgagttgaacgagaatctctatggtgacgattaacttgctactttattattacttggtaagttt 148  Q
    ||||||||| ||| ||||||||||||  |||||||| |||||| || | ||||  ||||  |||||||||||  ||| |||||||||  |||  || |||    
T  27917012 ttttatttgcttttctaaatagattctactaattattgagttgtacaacaatccatatgaagacgattaactcactattttattatt--ttgtaaaattt 27916915  T
Q  149 gatgcacttgctaattaattcactaaaatcaccatca 185  Q
    ||||||||||  |||   |||||||||||||||||||    
T  27916914 gatgcacttgtcaat---ttcactaaaatcaccatca 27916881  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 49 - 135
Target Start/End: Complemental strand, 21536523 - 21536438
Alignment:
Q  49 ttttatttgttttactaaatagattccgctaattatcgagttgaacgagaatctctatggtgacgattaacttgctactttattatt 135  Q
    |||||||| |||| |||||||  |||||||||||| |||||| ||||| |||| |  ||| || ||||||||| |||||||||||||    
T  21536523 ttttatttttttt-ctaaataagttccgctaattaccgagtttaacgaaaatcccagtggagaagattaacttcctactttattatt 21536438  T

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Target: scaffold0011 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 18 - 95
Target Start/End: Complemental strand, 227188 - 227109
Alignment:
Q  18 ttaaaaccctgtgaccactttaaatctcttat--tttatttgttttactaaatagattccgctaattatcgagttgaacg 95  Q
    |||||||||||  |||||||||||| | || |  |||||||| ||| |||||||||||  |||||||| |||||||||||    
T  227188 ttaaaaccctgcaaccactttaaatattttctcttttatttgcttttctaaatagattatgctaattaccgagttgaacg 227109  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 49 - 133
Target Start/End: Complemental strand, 27117538 - 27117455
Alignment:
Q  49 ttttatttgttttactaaatagattccgctaattatcgagttgaacgagaatctctatggtgacgattaacttgctactttatta 133  Q
    |||||||||||||  |||||||| |||||| |||| ||||||||||||  |||  | ||  |||||||||||| |||||||||||    
T  27117538 ttttatttgttttt-taaatagactccgctgattaccgagttgaacgacgatccttgtgaggacgattaacttactactttatta 27117455  T

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