View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14411_high_21 (Length: 399)

Name: NF14411_high_21
Description: NF14411
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14411_high_21
NF14411_high_21
[»] chr1 (14 HSPs)
chr1 (13-394)||(3447259-3447640)
chr1 (199-393)||(3449016-3449212)
chr1 (192-393)||(46135730-46135940)
chr1 (273-393)||(11671006-11671126)
chr1 (195-369)||(4033162-4033339)
chr1 (270-393)||(12180870-12180993)
chr1 (328-393)||(29292618-29292683)
chr1 (328-393)||(29263468-29263533)
chr1 (270-393)||(12181152-12181275)
chr1 (202-332)||(12181482-12181613)
chr1 (276-393)||(13993728-13993845)
chr1 (329-392)||(21087687-21087747)
chr1 (270-326)||(13995608-13995663)
chr1 (270-326)||(14003722-14003777)
[»] chr3 (6 HSPs)
chr3 (260-393)||(49089492-49089625)
chr3 (191-380)||(34618918-34619109)
chr3 (260-369)||(52655459-52655568)
chr3 (183-226)||(49089430-49089473)
chr3 (203-326)||(3956869-3956995)
chr3 (273-393)||(3964639-3964759)
[»] chr5 (8 HSPs)
chr5 (203-393)||(13858253-13858444)
chr5 (270-393)||(6454417-6454540)
chr5 (273-365)||(11664753-11664845)
chr5 (285-393)||(13860044-13860152)
chr5 (273-359)||(5157381-5157467)
chr5 (192-249)||(90822-90879)
chr5 (195-236)||(11664867-11664908)
chr5 (90-146)||(4116377-4116433)
[»] chr7 (5 HSPs)
chr7 (270-393)||(48572741-48572864)
chr7 (191-389)||(41397739-41397937)
chr7 (191-393)||(22130540-22130741)
chr7 (191-393)||(40500365-40500566)
chr7 (195-359)||(26198858-26199012)
[»] chr2 (7 HSPs)
chr2 (202-393)||(35549753-35549944)
chr2 (191-393)||(5816256-5816461)
chr2 (205-393)||(5813466-5813655)
chr2 (195-356)||(37672535-37672689)
chr2 (238-313)||(14389689-14389766)
chr2 (192-236)||(29171508-29171552)
chr2 (192-224)||(41973675-41973707)
[»] chr4 (11 HSPs)
chr4 (262-389)||(49408676-49408803)
chr4 (273-393)||(22497917-22498037)
chr4 (294-392)||(49058241-49058335)
chr4 (260-393)||(36761738-36761872)
chr4 (195-393)||(38705494-38705693)
chr4 (273-393)||(42430749-42430873)
chr4 (186-331)||(4897364-4897512)
chr4 (191-236)||(42430683-42430728)
chr4 (276-392)||(40603880-40603996)
chr4 (191-250)||(49058151-49058210)
chr4 (342-393)||(3071679-3071730)
[»] chr6 (3 HSPs)
chr6 (270-393)||(1520453-1520576)
chr6 (277-328)||(35026714-35026765)
chr6 (290-359)||(15959703-15959772)
[»] chr8 (4 HSPs)
chr8 (218-393)||(7305550-7305725)
chr8 (270-369)||(11361888-11361987)
chr8 (264-369)||(7303041-7303145)
chr8 (288-393)||(13014776-13014881)


Alignment Details
Target: chr1 (Bit Score: 326; Significance: 0; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 13 - 394
Target Start/End: Complemental strand, 3447640 - 3447259
Alignment:
Q  13 ttcttctataaatacattattaacatgtaatatacacatatctataactctacattcaaaacttaaacataagaaattcaatcatggctgcaagtaatga 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  3447640 ttcttctataaatacattattaacatgtaatatacacatatctataactctacattcaaaacttaaacataagaaattcaatcatggctgcaaataatga 3447541  T
Q  113 tccaacggtgaatgagttggaagtaaagattcaaatttggatgttaagaaggttggtaaggaagagtcaaggtcggcacaagggggatgccactaaagca 212  Q
    ||||  ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  3447540 tccagtggtgaatgagttggaagcaaagattcaaatttggatgttaagaaggttggtaaggaagagtcagggtcggcacaagggggatgccactaaagca 3447441  T
Q  213 agggctttaggcccccgagtttttcaagccccatattatgtctcatatttgtctttaaaaatattttcgtacgtcaaattttgtaaatatgttcactcaa 312  Q
    |||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||| |||||||||||||| |||| ||||||||||||    
T  3447440 agggctttaggcccccgagtttttcaagccccatatttggtctcatatttgtctttaaaaatatttttgtacgtcaaattttataaacatgttcactcaa 3447341  T
Q  313 aactcaagtggtatgtaaatgaagagttttagttcatgttgcaagttcgatttcaattatagttattttattggttatttgt 394  Q
    | ||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||| |||||||||||||||||||    
T  3447340 agctcaagtggtatgtaaatgaagagtcttagttcatgttgcaagttcgatttcaatgatagctattttattggttatttgt 3447259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 199 - 393
Target Start/End: Complemental strand, 3449212 - 3449016
Alignment:
Q  199 atgccactaaagcaagggctttaggcccccgagtttttcaagccccatattatgtctcatatttgtct--ttaaaaatattttcgtacgtcaaattttgt 296  Q
    ||||||| |||||||| | |||||   ||||||||||| | | ||| ||||| ||||||||||| | |  || ||||||||||||||||| ||||||||     
T  3449212 atgccaccaaagcaagagttttagattcccgagttttttaggtcccgtattaggtctcatatttttatgtttgaaaatattttcgtacgttaaattttgc 3449113  T
Q  297 aaatatgttcactcaaaactcaagtggtatgtaaatgaagagttttagttcatgttgcaagttcgatttcaattatagttattttattggttatttg 393  Q
    ||||||||||||||||| |||||||||||||||||||||||||  |||||||||||||||||||||| |||||  ||  ||||||||| ||||||||    
T  3449112 aaatatgttcactcaaagctcaagtggtatgtaaatgaagagtcatagttcatgttgcaagttcgatctcaatgctaactattttattagttatttg 3449016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 192 - 393
Target Start/End: Complemental strand, 46135940 - 46135730
Alignment:
Q  192 aagggggatgccactaaagcaa-gggctttaggcccccgagtttttcaagccccatat------tatgtctcatatttgt--ctttaaaaatattttcgt 282  Q
    ||||||| |||||||||||||| |||||| | |||||||||||||||| ||| | |||      || | ||||||||| |  |||| |||||||||||||    
T  46135940 aagggggttgccactaaagcaaagggcttcaagcccccgagtttttcaggcctcgtatctgtattaggcctcatatttttatctttgaaaatattttcgt 46135841  T
Q  283 acgtcaaattttgtaaatatgttcactcaaaactcaagtggtatgtaaatgaagagttttagttcatgttgcaagttcgatttcaattatagttatttta 382  Q
    ||||||||||| ||||| | |||||||| ||  |||||||||||| |||||||||||  |||||||||||| |||||||||||||||  ||| |||||||    
T  46135840 acgtcaaatttcgtaaacacgttcactcgaagttcaagtggtatgcaaatgaagagtcatagttcatgttgtaagttcgatttcaatactaggtatttta 46135741  T
Q  383 ttggttatttg 393  Q
    |||||||||||    
T  46135740 ttggttatttg 46135730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 273 - 393
Target Start/End: Complemental strand, 11671126 - 11671006
Alignment:
Q  273 atattttcgtacgtcaaattttgtaaatatgttcactcaaaactcaagtggtatgtaaatgaagagttttagttcatgttgcaagttcgatttcaattat 372  Q
    |||||||||||||||||||||||| || || ||||| | || |||||||||||||||||||| ||||  | |||||||| |||||||||||||||||  |    
T  11671126 atattttcgtacgtcaaattttgttaacatattcacccgaagctcaagtggtatgtaaatgaggagtcatggttcatgtagcaagttcgatttcaatgct 11671027  T
Q  373 agttattttattggttatttg 393  Q
    |  ||||||||||||||||||    
T  11671026 aactattttattggttatttg 11671006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 195 - 369
Target Start/End: Complemental strand, 4033339 - 4033162
Alignment:
Q  195 ggggatgccactaaagcaagggctttaggcccccgagtttttcaagccccatattatgtctcatattt--gtcttta-aaaatattttcgtacgtcaaat 291  Q
    |||| |||||||||||||| || ||||||||||  | ||||| | |  || ||||| | |||||||||  ||||||  |||||||||||| |||||||||    
T  4033339 ggggctgccactaaagcaaaggttttaggcccctaatttttttaggttccgtattaggcctcatatttttgtctttggaaaatattttcgcacgtcaaat 4033240  T
Q  292 tttgtaaatatgttcactcaaaactcaagtggtatgtaaatgaagagttttagttcatgttgcaagttcgatttcaat 369  Q
    |||||||| ||||||| ||||| || |||||||||||||| || ||||  ||| ||||||||||||||| ||||||||    
T  4033239 tttgtaaacatgttcattcaaagcttaagtggtatgtaaacgaggagtcgtaggtcatgttgcaagttctatttcaat 4033162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 270 - 393
Target Start/End: Complemental strand, 12180993 - 12180870
Alignment:
Q  270 aaaatattttcgtacgtcaaattttgtaaatatgttcactcaaaactcaagtggtatgtaaatgaagagttttagttcatgttgcaagttcgatttcaat 369  Q
    |||||||||| ||  |||||||||| |||| ||||| |||| || ||||||||||||| |||||| ||||  |||||||| |||||||||| ||||||||    
T  12180993 aaaatatttttgtttgtcaaattttttaaaaatgtttactcgaagctcaagtggtatgcaaatgaggagtcatagttcattttgcaagttcaatttcaat 12180894  T
Q  370 tatagttattttattggttatttg 393  Q
      |||  ||||||||| |||||||    
T  12180893 gttagccattttattgtttatttg 12180870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 328 - 393
Target Start/End: Original strand, 29292618 - 29292683
Alignment:
Q  328 taaatgaagagttttagttcatgttgcaagttcgatttcaattatagttattttattggttatttg 393  Q
    ||||||||||||| |||||||||||| |||||||||||||||  ||| ||||||||||||||||||    
T  29292618 taaatgaagagttatagttcatgttgtaagttcgatttcaatgttaggtattttattggttatttg 29292683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 328 - 393
Target Start/End: Original strand, 29263468 - 29263533
Alignment:
Q  328 taaatgaagagttttagttcatgttgcaagttcgatttcaattatagttattttattggttatttg 393  Q
    |||||||||| || |||||||||||| |||||||||||||||  ||| ||||||||||||||||||    
T  29263468 taaatgaagaattatagttcatgttgtaagttcgatttcaatgttaggtattttattggttatttg 29263533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 270 - 393
Target Start/End: Complemental strand, 12181275 - 12181152
Alignment:
Q  270 aaaatattttcgtacgtcaaattttgtaaatatgttcactcaaaactcaagtggtatgtaaatgaagagttttagttcatgttgcaagttcgatttcaat 369  Q
    |||||||||| |||||||||||||| | || ||| | ||| ||| ||||||||||||| |||||| ||||  ||||| || || ||||||| ||||||||    
T  12181275 aaaatatttttgtacgtcaaattttttcaacatgcttacttaaagctcaagtggtatgcaaatgaggagtcatagtttattttacaagttcaatttcaat 12181176  T
Q  370 tatagttattttattggttatttg 393  Q
      ||  |||||||||||| |||||    
T  12181175 gctaactattttattggtgatttg 12181152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 202 - 332
Target Start/End: Complemental strand, 12181613 - 12181482
Alignment:
Q  202 ccactaaagcaagggctttaggcccccgagtttttcaagccccatattatgtctc--atatttgtctttaaaaatattttcgtacgtcaaattttgtaaa 299  Q
    |||||||| |||||||||||||||||||||||||| | | | | ||||| | |||  || ||||||||| |||||||||||||||||  || ||||||||    
T  12181613 ccactaaatcaagggctttaggcccccgagttttttaggtctcgtattaggcctcgtatttttgtctttgaaaatattttcgtacgttcaa-tttgtaaa 12181515  T
Q  300 tatgttcactcaaaactcaagtggtatgtaaat 332  Q
     || ||||||   | ||||||||||||| ||||    
T  12181514 catattcacttggagctcaagtggtatgcaaat 12181482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 276 - 393
Target Start/End: Complemental strand, 13993845 - 13993728
Alignment:
Q  276 ttttcgtacgtcaaattttgtaaatatgttcactcaaaactcaagtggtatgtaaatgaagagttttagttcatgttgcaagttcgatttcaattatagt 375  Q
    |||| |||| |||||| || ||||| ||||||| ||||  ||||||||||| ||||| |||||||   ||||||| || ||||| |||||  ||  |||     
T  13993845 tttttgtacatcaaatcttataaatttgttcacccaaagttcaagtggtatttaaataaagagttacggttcatgatggaagtttgatttatatgctagc 13993746  T
Q  376 tattttattggttatttg 393  Q
     |||||||||||||||||    
T  13993745 cattttattggttatttg 13993728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 329 - 392
Target Start/End: Original strand, 21087687 - 21087747
Alignment:
Q  329 aaatgaagagttttagttcatgttgcaagttcgatttcaattatagttattttattggttattt 392  Q
    |||||||||||  ||||||||||||   |||||||||||||  ||| |||||||||||||||||    
T  21087687 aaatgaagagtcatagttcatgttg---gttcgatttcaatgctagctattttattggttattt 21087747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 270 - 326
Target Start/End: Original strand, 13995608 - 13995663
Alignment:
Q  270 aaaatattttcgtacgtcaaattttgtaaatatgttcactcaaaactcaagtggtat 326  Q
    |||||||||| |||||||||| ||| |||| |||||||||| || ||||||||||||    
T  13995608 aaaatattttagtacgtcaaa-tttataaacatgttcactcgaatctcaagtggtat 13995663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 270 - 326
Target Start/End: Original strand, 14003722 - 14003777
Alignment:
Q  270 aaaatattttcgtacgtcaaattttgtaaatatgttcactcaaaactcaagtggtat 326  Q
    |||||||||| |||||||||| ||| |||| |||||||||| || ||||||||||||    
T  14003722 aaaatattttagtacgtcaaa-tttataaacatgttcactcgaatctcaagtggtat 14003777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 86; Significance: 5e-41; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 260 - 393
Target Start/End: Original strand, 49089492 - 49089625
Alignment:
Q  260 tttgtctttaaaaatattttcgtacgtcaaattttgtaaatatgttcactcaaaactcaagtggtatgtaaatgaagagttttagttcatgttgcaagtt 359  Q
    |||||||||| ||||||||||||||||||||||||||||| |||||||||| || |||||||| ||||||||||| ||||| ||||| ||||||||||||    
T  49089492 tttgtctttacaaatattttcgtacgtcaaattttgtaaacatgttcactcgaagctcaagtgatatgtaaatgaggagttgtagtttatgttgcaagtt 49089591  T
Q  360 cgatttcaattatagttattttattggttatttg 393  Q
     |||||||||  ||| ||||||||||||||||||    
T  49089592 tgatttcaatgctagctattttattggttatttg 49089625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 191 - 380
Target Start/End: Complemental strand, 34619109 - 34618918
Alignment:
Q  191 caagggggatgccactaaagcaagggctttaggcccccgagtttttcaagccccatattatgtctcatattt--gtctttaaaaatattttcgtacgtca 288  Q
    |||||||| |||||||||||||||  |||||||||||| | | ||  |  |||| ||||| |  ||||||||  |||||| ||||||||||||||| |||    
T  34619109 caagggggctgccactaaagcaagaactttaggcccccaaatattgtactccccgtattaggcttcatatttttgtctttgaaaatattttcgtacatca 34619010  T
Q  289 aattttgtaaatatgttcactcaaaactcaagtggtatgtaaatgaagagttttagttcatgttgcaagttcgatttcaattatagttattt 380  Q
    ||||||||||| |||||||||| || |||||||||||||||||||| ||||  || |||||||||||||||||||||||||  |||||||||    
T  34619009 aattttgtaaacatgttcactcgaagctcaagtggtatgtaaatgaggagtcataattcatgttgcaagttcgatttcaatgctagttattt 34618918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 260 - 369
Target Start/End: Original strand, 52655459 - 52655568
Alignment:
Q  260 tttgtctttaaaaatattttcgtacgtcaaattttgtaaatatgttcactcaaaactcaagtggtatgtaaatgaagagttttagttcatgttgcaagtt 359  Q
    ||||| ||| ||||||||||||||||| | |||||||||| ||||||||||||| ||||||| |||| |||||| ||||   || || ||||||||||||    
T  52655459 tttgtttttgaaaatattttcgtacgttagattttgtaaacatgttcactcaaagctcaagttgtatttaaatggagagccataatttatgttgcaagtt 52655558  T
Q  360 cgatttcaat 369  Q
    ||||||||||    
T  52655559 cgatttcaat 52655568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 183 - 226
Target Start/End: Original strand, 49089430 - 49089473
Alignment:
Q  183 ggtcggcacaagggggatgccactaaagcaagggctttaggccc 226  Q
    ||||||| |||||||| |||||||||||||||||||||||||||    
T  49089430 ggtcggctcaagggggctgccactaaagcaagggctttaggccc 49089473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 203 - 326
Target Start/End: Complemental strand, 3956995 - 3956869
Alignment:
Q  203 cactaaagcaagggctttaggcccccgagtttttcaagccccatattatgtctcatat----ttgtctttaaaaatattttcgtacgtcaaattttgtaa 298  Q
    |||||||||||||||| ||||||||||||||||| |   |   |||||  ||||||||    || ||||| | |||||||| |||||||||| ||| |||    
T  3956995 cactaaagcaagggctataggcccccgagtttttaagatcttgtattagctctcatattttattatctttgataatatttttgtacgtcaaa-tttataa 3956897  T
Q  299 atatgttcactcaaaactcaagtggtat 326  Q
    | |||||||||| || ||||||||||||    
T  3956896 acatgttcactcgaatctcaagtggtat 3956869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 273 - 393
Target Start/End: Original strand, 3964639 - 3964759
Alignment:
Q  273 atattttcgtacgtcaaattttgtaaatatgttcactcaaaactcaagtggtatgtaaatgaagagttttagttcatgttgcaagttcgatttcaattat 372  Q
    ||||||| |||| || ||| || ||||| ||||||| ||||  ||||||||||| ||||| |||||||   ||||||| || ||||| |||||  ||  |    
T  3964639 atatttttgtacatctaatcttataaatttgttcacccaaagttcaagtggtatttaaataaagagttacggttcatgatggaagtttgatttatatgct 3964738  T
Q  373 agttattttattggttatttg 393  Q
    ||  |||||||||||||||||    
T  3964739 agccattttattggttatttg 3964759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 82; Significance: 1e-38; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 203 - 393
Target Start/End: Complemental strand, 13858444 - 13858253
Alignment:
Q  203 cactaaagcaagggctttaggcccccgagtttttcaagccccatattatgtctcatattt--gtctttaaaaatattttcgtacgtcaaattttgtaaat 300  Q
    ||||||||||| ||||||||||||| || ||||| | ||||| ||||| | |||||||||  || ||| |||||||||| | |||||||||||||||||     
T  13858444 cactaaagcaaaggctttaggcccc-gaatttttaacgccccgtattaggcctcatatttttgtttttgaaaatatttttgaacgtcaaattttgtaaac 13858346  T
Q  301 atgttcactcaaaactcaagtggtatgtaaatgaagagttttagttcatgttgcaagttcgatttcaattatagttattttattggttatttg 393  Q
    |||||||||| || |||||||||||||||||||| ||||  || |||||||||||||||||||||||||  ||| ||||||| | ||||||||    
T  13858345 atgttcactcgaagctcaagtggtatgtaaatgatgagtcataattcatgttgcaagttcgatttcaatgctagctattttactagttatttg 13858253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 270 - 393
Target Start/End: Complemental strand, 6454540 - 6454417
Alignment:
Q  270 aaaatattttcgtacgtcaaattttgtaaatatgttcactcaaaactcaagtggtatgtaaatgaagagttttagttcatgttgcaagttcgatttcaat 369  Q
    ||||||||| ||||| |||||||||||||| |||||||||| ||  |||||||||||| |||||||||||  |||||||| ||| |||||||||||||||    
T  6454540 aaaatatttccgtacatcaaattttgtaaacatgttcactcgaagttcaagtggtatgcaaatgaagagtcatagttcatattgtaagttcgatttcaat 6454441  T
Q  370 tatagttattttattggttatttg 393  Q
      |||  |||||||||||||||||    
T  6454440 gctaggaattttattggttatttg 6454417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 273 - 365
Target Start/End: Complemental strand, 11664845 - 11664753
Alignment:
Q  273 atattttcgtacgtcaaattttgtaaatatgttcactcaaaactcaagtggtatgtaaatgaagagttttagttcatgttgcaagttcgattt 365  Q
    |||||||||||||||||||||| |||| ||||| |||| || |||||||||||||||||||||||||  |||||||||| ||||||| |||||    
T  11664845 atattttcgtacgtcaaattttataaacatgttaactcgaagctcaagtggtatgtaaatgaagagtcatagttcatgtagcaagtttgattt 11664753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 285 - 393
Target Start/End: Original strand, 13860044 - 13860152
Alignment:
Q  285 gtcaaattttgtaaatatgttcactcaaaactcaagtggtatgtaaatgaagagttttagttcatgttgcaagttcgatttcaattatagttattttatt 384  Q
    ||||||||||||||| ||||||| |  || |||||||||||||||||||| ||||  || |||||||| |||||||||||||| |  ||| |||||||||    
T  13860044 gtcaaattttgtaaacatgttcatttgaagctcaagtggtatgtaaatgaggagtcataattcatgtttcaagttcgatttcagtgttagctattttatt 13860143  T
Q  385 ggttatttg 393  Q
     ||||||||    
T  13860144 agttatttg 13860152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 273 - 359
Target Start/End: Original strand, 5157381 - 5157467
Alignment:
Q  273 atattttcgtacgtcaaattttgtaaatatgttcactcaaaactcaagtggtatgtaaatgaagagttttagttcatgttgcaagtt 359  Q
    ||||||||||| ||||| |||||||||||||||  | | || |||| ||||||  ||||||||||||| |||||||||||| |||||    
T  5157381 atattttcgtaagtcaacttttgtaaatatgtttgcaccaagctcatgtggtagttaaatgaagagttgtagttcatgttgtaagtt 5157467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 192 - 249
Target Start/End: Complemental strand, 90879 - 90822
Alignment:
Q  192 aagggggatgccactaaagcaagggctttaggcccccgagtttttcaagccccatatt 249  Q
    ||||||||||||| |||||||||||||||||||||| || ||||| | ||| ||||||    
T  90879 aagggggatgccattaaagcaagggctttaggcccctgatttttttaggcctcatatt 90822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 195 - 236
Target Start/End: Complemental strand, 11664908 - 11664867
Alignment:
Q  195 ggggatgccactaaagcaagggctttaggcccccgagttttt 236  Q
    |||| ||||| ||||||||||| |||||||||||||||||||    
T  11664908 ggggctgccattaaagcaagggttttaggcccccgagttttt 11664867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 90 - 146
Target Start/End: Complemental strand, 4116433 - 4116377
Alignment:
Q  90 tcaatcatggctgcaagtaatgatccaacggtgaatgagttggaagtaaagattcaa 146  Q
    ||||||||||| ||||  ||||||||||| ||||| |||||||||| ||| ||||||    
T  4116433 tcaatcatggcagcaaacaatgatccaacagtgaaggagttggaagcaaaaattcaa 4116377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 72; Significance: 1e-32; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 270 - 393
Target Start/End: Complemental strand, 48572864 - 48572741
Alignment:
Q  270 aaaatattttcgtacgtcaaattttgtaaatatgttcactcaaaactcaagtggtatgtaaatgaagagttttagttcatgttgcaagttcgatttcaat 369  Q
    |||||||||| |||||||||||||||||||| ||||||||| || |||||||||||||||||||| ||||  ||||||||||||||||||| |||| |||    
T  48572864 aaaatatttttgtacgtcaaattttgtaaatgtgttcactcgaagctcaagtggtatgtaaatgaggagtcgtagttcatgttgcaagttcaattttaat 48572765  T
Q  370 tatagttattttattggttatttg 393  Q
      ||  ||||||||||||||||||    
T  48572764 gctaactattttattggttatttg 48572741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 191 - 389
Target Start/End: Complemental strand, 41397937 - 41397739
Alignment:
Q  191 caagggggatgccactaaagcaagggctttaggcccccgagtttttcaagccccatattatgtctcatattt--gtctttaaaaatattttcgtacgtca 288  Q
    |||||||| ||||||||||||||| ||| ||||||||| | |||||  |||   |||||| | | |||||||  |||||| |||||||||||||||||||    
T  41397937 caagggggctgccactaaagcaagagctataggcccccaaatttttttagc---atattaggccccatatttttgtctttgaaaatattttcgtacgtca 41397841  T
Q  289 aattttgtaaat-atgttcactcaaaactcaagtggtatgtaaatgaagagttttagttcatgttgcaagttcgatttcaattatagttattttattggt 387  Q
    ||||||| |||  |||||||||| || ||||||| |||||||||  | ||||  || ||||||||| |||||||||||||||  ||| ||||||||||||    
T  41397840 aattttgcaaaacatgttcactcgaagctcaagtcgtatgtaaagaaggagtcataattcatgttgaaagttcgatttcaatgctagctattttattggt 41397741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 191 - 393
Target Start/End: Complemental strand, 22130741 - 22130540
Alignment:
Q  191 caagggggatgccactaaagcaagggctttaggcccccgagtttttcaagccccatattatgtctcatatttgt--ctttaaaaatattttcgtacgtca 288  Q
    |||||| | |||||| |||||||||||||||||||||| ||||||| | ||  | ||||  | ||||||||| |  |||| ||||||||||   |||| |    
T  22130741 caagggagctgccaccaaagcaagggctttaggcccccaagttttttaggcttcgtattcggcctcatatttttgactttgaaaatatttt---acgtta 22130645  T
Q  289 aattttgtaaatatgttcactcaaaactcaagtggtatgtaaatgaagagttttagttcatgttgcaagttcgatttcaattatagttattttattggtt 388  Q
    ||||||||||| | ||||| || ||  |||||||||||||||| || ||||  || |||||||||||||||||||||||||| ||| ||| |||||| ||    
T  22130644 aattttgtaaacacgttcattcgaagttcaagtggtatgtaaacgaggagtcatacttcatgttgcaagttcgatttcaattctagctatattattgatt 22130545  T
Q  389 atttg 393  Q
    |||||    
T  22130544 atttg 22130540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 191 - 393
Target Start/End: Original strand, 40500365 - 40500566
Alignment:
Q  191 caagggggatgccactaaagcaagggctttaggcccccgagtttttcaagccccatattatgtctcatatttgt--ctttaaaaatattttcgtacgtca 288  Q
    |||||| | |||||| |||||||||||||||||||||| ||||||| | ||  | ||||  | ||||||||| |  |||| ||||||||||   |||| |    
T  40500365 caagggagctgccaccaaagcaagggctttaggcccccaagttttttaggcttcgtattcggcctcatatttttgactttgaaaatatttt---acgtta 40500461  T
Q  289 aattttgtaaatatgttcactcaaaactcaagtggtatgtaaatgaagagttttagttcatgttgcaagttcgatttcaattatagttattttattggtt 388  Q
    ||||||||||| | ||||| || ||  |||||||||||||||| || ||||  || |||||||||||||||||||||||||| ||| ||| |||||| ||    
T  40500462 aattttgtaaacacgttcattcgaagttcaagtggtatgtaaacgaggagtcatacttcatgttgcaagttcgatttcaattctagctatattattgatt 40500561  T
Q  389 atttg 393  Q
    |||||    
T  40500562 atttg 40500566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 195 - 359
Target Start/End: Original strand, 26198858 - 26199012
Alignment:
Q  195 ggggatgccactaaagcaagggctttaggcccccgagtttttcaagccccatattatgtctcatatttgtctttaaaaatattttcgtacgtcaaatttt 294  Q
    |||| ||||||||||||||| |||||| ||||| || ||||||| ||| ||||||          ||| ||||| ||||||||| ||||||||||||||     
T  26198858 ggggctgccactaaagcaagagctttaagcccctgaatttttcaggcctcatatt----------tttatctttgaaaatatttccgtacgtcaaatttc 26198947  T
Q  295 gtaaatatgttcactcaaaactcaagtggtatgtaaatgaagagttttagttcatgttgcaagtt 359  Q
    || || |||||||||  ||  |||  ||||||| |||||||||||  || ||||||||| |||||    
T  26198948 gttaacatgttcacttgaagttcacatggtatgcaaatgaagagtcatacttcatgttgtaagtt 26199012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 71; Significance: 5e-32; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 202 - 393
Target Start/End: Complemental strand, 35549944 - 35549753
Alignment:
Q  202 ccactaaagcaagggctttaggcccccgagtttttcaagccccata---ttatgtctcatatttgtctttaaaaatattttcgtacgtcaaattttgtaa 298  Q
    |||||||||||||||||||| |||||||||||||| | ||||  ||   ||||| ||||| ||| ||||| ||||||||||||||| |||||||| ||||    
T  35549944 ccactaaagcaagggctttatgcccccgagttttttaggccctgtattgttatgcctcatttttatctttgaaaatattttcgtacatcaaatttcgtaa 35549845  T
Q  299 atatgttcactcaaaactcaagtggtatgtaaatgaagagttttagttcatgttgcaagttcgatttcaattatagttattttattggttatttg 393  Q
    |  ||||||||| || |||||||||||||||||| ||||||  ||||| ||||   ||||||||||| |||  ||  ||||||||||||||||||    
T  35549844 acctgttcactcgaagctcaagtggtatgtaaataaagagtcatagttgatgt---aagttcgattttaatgctacctattttattggttatttg 35549753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 191 - 393
Target Start/End: Original strand, 5816256 - 5816461
Alignment:
Q  191 caagggggatgccactaaagcaagggctttaggcccccgagtttttcaagccccatattatgtctcatattt--gtctttaaaaatattttcgtacgtca 288  Q
    |||||||| |||||||||||||| || |||||| |||| ||||||| |||| || || || | |||||||||  |||||| |||||||||| ||| ||||    
T  5816256 caagggggctgccactaaagcaaaggttttaggtccccaagttttttaagcaccgtactaggcctcatatttttgtctttgaaaatatttttgtatgtca 5816355  T
Q  289 aattttgtaaatatgttcactcaaaactcaagtggtatgtaaatgaagagttttagttcatgttgcaagttcgatttcaat-tatagttattttattggt 387  Q
    ||||||||||| || ||||||| |||||||| ||||||||||||   ||||| ||||  | |||||||||||||||| |||    || ||||||||||||    
T  5816356 aattttgtaaacatattcactcgaaactcaaatggtatgtaaatttggagttgtagtataggttgcaagttcgattttaatgccaagctattttattggt 5816455  T
Q  388 tatttg 393  Q
    ||||||    
T  5816456 tatttg 5816461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 205 - 393
Target Start/End: Complemental strand, 5813655 - 5813466
Alignment:
Q  205 ctaaagcaagggctttaggcccccgagtttttcaagccccatattatgtctcata-tttgtctttaaaaatattttcgtacgtcaaattttgtaaatatg 303  Q
    ||||||||| |||||||||||||| ||||||| |  | || ||||| | ||| || ||| ||||| |||||||||| ||| ||||||||||||||| |||    
T  5813655 ctaaagcaatggctttaggcccccaagttttttagtctccgtattaagcctcgtattttttctttgaaaatatttttgtatgtcaaattttgtaaacatg 5813556  T
Q  304 ttcactcaaaactcaagtggtatgtaaatgaagagttttagttcatgttgcaagttcgatttcaattatagttattttattggttatttg 393  Q
    || || | ||||| ||||| ||||||||||  ||||| ||||| ||||||||||||| |||| |||  ||  ||||||||||||||||||    
T  5813555 ttgacgcgaaactaaagtgatatgtaaatgtggagttatagtttatgttgcaagttcaattttaatgctatctattttattggttatttg 5813466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 195 - 356
Target Start/End: Original strand, 37672535 - 37672689
Alignment:
Q  195 ggggatgccactaaagcaagggctttaggcccccgagtttttcaagccccatattatgtctcatatttgtctttaaaa--atattttcgtacgtcaaatt 292  Q
    |||||||||||||||||||||||||||||||||||| || ||   ||| ||||||          |||||||||||||  |||||||||| | |||||||    
T  37672535 ggggatgccactaaagcaagggctttaggcccccgatttgtttgggcctcatatt----------tttgtctttaaaaaaatattttcgtgcatcaaatt 37672624  T
Q  293 ttgtaaatatgttca--ctcaaaactcaagtggtatgtaaatgaagagttttagttcatgttgcaa 356  Q
    ||||||||||| |||  ||| || |||||||||||||||||||| || |  |||||||||||||||    
T  37672625 ttgtaaatatgctcactctcgaagctcaagtggtatgtaaatgagga-tcatagttcatgttgcaa 37672689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 238 - 313
Target Start/End: Original strand, 14389689 - 14389766
Alignment:
Q  238 aagccccatattatgtctcatatttgt--ctttaaaaatattttcgtacgtcaaattttgtaaatatgttcactcaaa 313  Q
    ||||||| ||||| | ||||||||| |  |||| ||||||||||||||||||||||||| ||||||||||||||||||    
T  14389689 aagccccgtattaggcctcatatttttatctttgaaaatattttcgtacgtcaaattttataaatatgttcactcaaa 14389766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 192 - 236
Target Start/End: Complemental strand, 29171552 - 29171508
Alignment:
Q  192 aagggggatgccactaaagcaagggctttaggcccccgagttttt 236  Q
    |||||||||||||| |||||||||||||||| |||| || |||||    
T  29171552 aagggggatgccaccaaagcaagggctttagacccctgatttttt 29171508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 192 - 224
Target Start/End: Original strand, 41973675 - 41973707
Alignment:
Q  192 aagggggatgccactaaagcaagggctttaggc 224  Q
    ||||||||||||||||||| |||||||||||||    
T  41973675 aagggggatgccactaaagtaagggctttaggc 41973707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 60; Significance: 2e-25; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 262 - 389
Target Start/End: Original strand, 49408676 - 49408803
Alignment:
Q  262 tgtctttaaaaatattttcgtacgtcaaattttgtaaatatgttcactcaaaactcaagtggtatgtaaatgaagagttttagttcatgttgcaagttcg 361  Q
    |||||||| ||||||||||||| |||||||||| |||| ||||||| || ||||||||||||||||||||||| ||||  || || || ||| |||||||    
T  49408676 tgtctttagaaatattttcgtatgtcaaattttctaaacatgttcattcgaaactcaagtggtatgtaaatgaggagtcataatttatattgtaagttcg 49408775  T
Q  362 atttcaattatagttattttattggtta 389  Q
    ||||||||  ||| ||||||||| ||||    
T  49408776 atttcaatgctagctattttattagtta 49408803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 273 - 393
Target Start/End: Complemental strand, 22498037 - 22497917
Alignment:
Q  273 atattttcgtacgtcaaattttgtaaatatgttcactcaaaactcaagtggtatgtaaatgaagagttttagttcatgttgcaagttcgatttcaattat 372  Q
    ||||||| ||| ||||||||||||||||| |||||||| || || ||||||||||||||||| ||||  |||||||||| ||||||| |||||  || ||    
T  22498037 atatttttgtatgtcaaattttgtaaatacgttcactcgaagcttaagtggtatgtaaatgaggagtcatagttcatgtagcaagtttgatttacataat 22497938  T
Q  373 agttattttattggttatttg 393  Q
    |  ||||||||||||||||||    
T  22497937 aactattttattggttatttg 22497917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 294 - 392
Target Start/End: Original strand, 49058241 - 49058335
Alignment:
Q  294 tgtaaatatgttcactcaaaactcaagtggtatgtaaatgaagagttttagttcatgttgcaagttcgatttcaattatagttattttattggttattt 392  Q
    |||||| ||||||||||||| ||||||||||||||||| ||| |||    |||||||||||||||||||||| |||  ||| |||||||||||||||||    
T  49058241 tgtaaacatgttcactcaaagctcaagtggtatgtaaacgaaaagt----gttcatgttgcaagttcgattttaatgttagctattttattggttattt 49058335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 260 - 393
Target Start/End: Original strand, 36761738 - 36761872
Alignment:
Q  260 tttgtctttaaaaatatttt-cgtacgtcaaattttgtaaatatgttcactcaaaactcaagtggtatgtaaatgaagagttttagttcatgttgcaagt 358  Q
    ||||||||| |||||||||| ||||||||||||||||||||  |||||| || ||  |||| ||||||| |||||| ||||  |   |||||||| ||||    
T  36761738 tttgtctttgaaaatatttttcgtacgtcaaattttgtaaacttgttcattcgaagttcaaatggtatgcaaatgaggagtcattactcatgttgtaagt 36761837  T
Q  359 tcgatttcaattatagttattttattggttatttg 393  Q
    | |||||||||  ||| ||||||||||||||||||    
T  36761838 ttgatttcaatgctagctattttattggttatttg 36761872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 195 - 393
Target Start/End: Original strand, 38705494 - 38705693
Alignment:
Q  195 ggggatgccactaaagcaagggctttaggcccccgagtttttcaagccccatattatgtctcatatttg--tctttaaaaatattttcgtacgtcaaatt 292  Q
    ||||||| ||||||||||| |||||||||||| | ||||||| | ||  | ||||||  ||||| |||   | ||| |||||||||| || |||||||||    
T  38705494 ggggatgtcactaaagcaatggctttaggccctcaagttttttaggcttcttattatacctcattttttgttttttgaaaatatttttgttcgtcaaatt 38705593  T
Q  293 ttgtaaatatgttcactcaaaactcaagtggtatgtaaatgaagagttttagttcatgttgcaagttcgatttcaattatagttattttattggttattt 392  Q
    || |||| |||||| ||| ||||| ||||| ||| |||||| | ||||  | |||||||||||| ||| ||||||||  ||  |||||||||||||||||    
T  38705594 ttataaaaatgttcgctcgaaacttaagtgatatttaaatg-atagttaaaattcatgttgcaaattcaatttcaatgctaactattttattggttattt 38705692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 273 - 393
Target Start/End: Original strand, 42430749 - 42430873
Alignment:
Q  273 atattttcgtacgtcaaattttgtaaatatgttcactcaaaactcaagtgg----tatgtaaatgaagagttttagttcatgttgcaagttcgatttcaa 368  Q
    ||||||||||| ||||||||||||||| |||||||||  || || ||||||    ||||||||||| || |  |||||||||| |||| |||||||||||    
T  42430749 atattttcgtaggtcaaattttgtaaacatgttcacttgaagctgaagtggtatatatgtaaatgaggaatcatagttcatgtagcaaattcgatttcaa 42430848  T
Q  369 ttatagttattttattggttatttg 393  Q
    |  || ||||||||||| |||||||    
T  42430849 tgctaattattttattgattatttg 42430873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 186 - 331
Target Start/End: Original strand, 4897364 - 4897512
Alignment:
Q  186 cggcacaagggggatgccactaaagcaagggctttaggcccccgagtttt-tcaagccccatattatgtctcatatttgtcttta--aaaatattttcgt 282  Q
    |||| ||| |||| || |||||||||||||||| ||||||||| |||||| | | | ||| ||||| | ||||||||| | |||   ||||||| ||||     
T  4897364 cggcccaaaggggctggcactaaagcaagggctctaggcccccaagttttattaggtcccgtattaggcctcatatttttatttttgaaaatatattcgc 4897463  T
Q  283 acgtcaaattttgtaaatatgttcactcaaaactcaagtggtatgtaaa 331  Q
    |||| |||||||||| | ||||||| || ||| ||||||||||||||||    
T  4897464 acgtgaaattttgtagacatgttcaatcgaaattcaagtggtatgtaaa 4897512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 191 - 236
Target Start/End: Original strand, 42430683 - 42430728
Alignment:
Q  191 caagggggatgccactaaagcaagggctttaggcccccgagttttt 236  Q
    |||||||| |||||||||||||| ||||||||||||||||||||||    
T  42430683 caagggggctgccactaaagcaaaggctttaggcccccgagttttt 42430728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 276 - 392
Target Start/End: Original strand, 40603880 - 40603996
Alignment:
Q  276 ttttcgtacgtcaaattttgtaaatatgttcactcaaaactcaagtggtatgtaaatgaagagttttagttcatgttgcaagttcgatttcaattatagt 375  Q
    |||| |||||| ||||||| ||||||||||||||| ||  ||||||| ||||   ||||||| |  ||||| |||||| |||||| ||||| ||  |||     
T  40603880 tttttgtacgttaaattttataaatatgttcactcgaagttcaagtgatatgctgatgaagaatcatagtttatgttgtaagttccatttcgatgttagg 40603979  T
Q  376 tattttattggttattt 392  Q
    |||||||||||||||||    
T  40603980 tattttattggttattt 40603996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 191 - 250
Target Start/End: Original strand, 49058151 - 49058210
Alignment:
Q  191 caagggggatgccactaaagcaagggctttaggcccccgagtttttcaagccccatatta 250  Q
    |||||||| |||||||||||||| || ||||||||||| ||||||||||| ||| |||||    
T  49058151 caagggggttgccactaaagcaaaggttttaggcccccaagtttttcaagtcccgtatta 49058210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 342 - 393
Target Start/End: Complemental strand, 3071730 - 3071679
Alignment:
Q  342 tagttcatgttgcaagttcgatttcaattatagttattttattggttatttg 393  Q
    ||||||||||| ||||||| ||||||||  ||| ||||||||||||||||||    
T  3071730 tagttcatgttacaagttcaatttcaatgctagctattttattggttatttg 3071679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 52; Significance: 1e-20; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 270 - 393
Target Start/End: Complemental strand, 1520576 - 1520453
Alignment:
Q  270 aaaatattttcgtacgtcaaattttgtaaatatgttcactcaaaactcaagtggtatgtaaatgaagagttttagttcatgttgcaagttcgatttcaat 369  Q
    |||||||||| ||||||||||||| | ||| |||||||||| ||  | |||||||||| |||| ||||||| ||||| |||||  ||||||||||| |||    
T  1520576 aaaatatttttgtacgtcaaatttcgaaaacatgttcactcgaagtttaagtggtatgcaaataaagagttatagtttatgttataagttcgattttaat 1520477  T
Q  370 tatagttattttattggttatttg 393  Q
      ||| ||||||||||||||||||    
T  1520476 gttaggtattttattggttatttg 1520453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 277 - 328
Target Start/End: Complemental strand, 35026765 - 35026714
Alignment:
Q  277 tttcgtacgtcaaattttgtaaatatgttcactcaaaactcaagtggtatgt 328  Q
    ||||||||||||||||||||||| |||||||||| || ||||||||||||||    
T  35026765 tttcgtacgtcaaattttgtaaacatgttcactcgaagctcaagtggtatgt 35026714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 290 - 359
Target Start/End: Complemental strand, 15959772 - 15959703
Alignment:
Q  290 attttgtaaatatgttcactcaaaactcaagtggtatgtaaatgaagagttttagttcatgttgcaagtt 359  Q
    |||||||||| |||||||| | |||| ||| |||||| |||||||| |||| |||||  |||||||||||    
T  15959772 attttgtaaacatgttcaccccaaacacaaatggtatttaaatgaatagttgtagtttgtgttgcaagtt 15959703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 6e-16; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 218 - 393
Target Start/End: Complemental strand, 7305725 - 7305550
Alignment:
Q  218 tttaggcccccgagtttttcaagccccatattatgtctcatatttgtcttta--aaaatattttcgtacgtcaaattttgtaaatatgttcactcaaaac 315  Q
    ||||||| ||||||||||| ||||||| |  || | ||||||||| | |||   ||||||||||| ||||||||| || ||||| ||  || ||| ||      
T  7305725 tttaggctcccgagttttttaagccccgtgataggcctcatatttttatttttgaaaatattttcatacgtcaaaattcgtaaacat--tctctcgaagt 7305628  T
Q  316 tcaagtggtatgtaaatgaagagttttagttcatgttgcaagttcgatttcaattatagttattttattggttatttg 393  Q
    | |||||||||  |||||||||||  |||||||||||| ||||| |||||||||  ||| ||||||||||||||||||    
T  7305627 ttaagtggtatacaaatgaagagtcatagttcatgttgtaagtttgatttcaatgctagatattttattggttatttg 7305550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 270 - 369
Target Start/End: Complemental strand, 11361987 - 11361888
Alignment:
Q  270 aaaatattttcgtacgtcaaattttgtaaatatgttcactcaaaactcaagtggtatgtaaatgaagagttttagttcatgttgcaagttcgatttcaat 369  Q
    ||||||||||  || |||||||||||||||  |||| |||||||  |||||||||||||||| ||  | || |||||||||||||| |||||||||||||    
T  11361987 aaaatatttttctatgtcaaattttgtaaaagtgtttactcaaagttcaagtggtatgtaaacgagaaattgtagttcatgttgcatgttcgatttcaat 11361888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 264 - 369
Target Start/End: Complemental strand, 7303145 - 7303041
Alignment:
Q  264 tctttaaaaatattttcgtacgtcaaattttgtaaatatgttcactcaaaactcaagtggtatgtaaatgaagagttttagttcatgttgcaagttcgat 363  Q
    ||||| ||||||||||| |||||||||||| ||||| |||||| ||| ||  | |||||||||||| ||||| | |  |||||||||||| ||||| |||    
T  7303145 tctttgaaaatattttc-tacgtcaaatttcgtaaacatgttctctcgaagtttaagtggtatgtagatgaaaaatcatagttcatgttgtaagtttgat 7303047  T
Q  364 ttcaat 369  Q
    ||||||    
T  7303046 ttcaat 7303041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 288 - 393
Target Start/End: Complemental strand, 13014881 - 13014776
Alignment:
Q  288 aaattttgtaaatatgttcactcaaaactcaagtggtatgtaaatgaagagttttagttcatgttgcaagttcgatttcaattatagttattttattggt 387  Q
    |||||||| ||| |||||||||| || |||||||| ||||||||| | || |  | |||||||||||||||| |||||||||  ||| ||||||| || |    
T  13014881 aaattttgaaaacatgttcactcgaagctcaagtgatatgtaaattaggaatcatcgttcatgttgcaagtttgatttcaatgctagctattttaatgat 13014782  T
Q  388 tatttg 393  Q
    ||||||    
T  13014781 tatttg 13014776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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