View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14411_high_3 (Length: 705)

Name: NF14411_high_3
Description: NF14411
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14411_high_3
NF14411_high_3
[»] chr8 (4 HSPs)
chr8 (15-687)||(41015105-41015777)
chr8 (573-692)||(1605267-1605385)
chr8 (563-688)||(11142707-11142831)
chr8 (563-702)||(1662526-1662664)
[»] chr1 (6 HSPs)
chr1 (574-688)||(4328782-4328896)
chr1 (563-688)||(29395391-29395515)
chr1 (563-688)||(30410795-30410919)
chr1 (563-688)||(35161958-35162082)
chr1 (617-688)||(28549359-28549430)
chr1 (617-688)||(41866988-41867059)
[»] chr7 (3 HSPs)
chr7 (153-692)||(34575598-34576145)
chr7 (573-688)||(13946651-13946765)
chr7 (617-684)||(33865605-33865671)
[»] chr3 (4 HSPs)
chr3 (563-693)||(4865119-4865248)
chr3 (563-688)||(55041454-55041578)
chr3 (597-688)||(30766014-30766104)
chr3 (617-684)||(23217047-23217113)
[»] chr2 (1 HSPs)
chr2 (418-688)||(17830846-17831116)
[»] chr6 (4 HSPs)
chr6 (617-684)||(11074870-11074936)
chr6 (563-688)||(32444478-32444602)
chr6 (618-688)||(6309166-6309236)
chr6 (563-608)||(11178441-11178486)
[»] chr4 (2 HSPs)
chr4 (617-688)||(34703771-34703842)
chr4 (617-688)||(43046273-43046344)


Alignment Details
Target: chr8 (Bit Score: 625; Significance: 0; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 625; E-Value: 0
Query Start/End: Original strand, 15 - 687
Target Start/End: Complemental strand, 41015777 - 41015105
Alignment:
Q  15 atagggagcataacaaaagcttgtacaaaataaaccagcatgataagcatatgattgtgtatatattttaaaaacttcgcatgattaaaacaacagtagt 114  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  41015777 atagggagcataacagaagcttgtacaaaataaaccagcatgataagcatatgattgtgtatatattttaaaaactttgcatgattaaaacaacagtagt 41015678  T
Q  115 ctactcccattcaacatcatgctcaatcatattcctgtctatgtcagttaatggatttggatccaagggtgctgcaagaaacagataacaacataataag 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41015677 ctactcccattcaacatcatgctcaatcatattcctgtctatgtcagttaatggatttggatccaagggtgctgcaagaaacagataacaacataataag 41015578  T
Q  215 cgtgttattcatagatagtcaaaccaaaacgcaaattcagaatacaaaatgatgtaagatgaaaggtaatacatggccgttaacatctggtatgacaaaa 314  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  41015577 cgtgttattcatagatagtcaaaccaaaacgcaaatttagaatacaaaatgatgtaagatgaaaggtaatacatggctgttaacatctggtatgacaaaa 41015478  T
Q  315 aggtctggatgttattgtgtgccatgacagaatgggagagattggaagtgatgggaaatcagaaaggtgattcatatttatacaatcatattgtgcattc 414  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41015477 aggtctggatgttattgtgtgccatgacagaatgggagagattggaagtgatgggaaatcagaaaggtgattcatatttatacaatcatattgtgcattc 41015378  T
Q  415 cattggtaactgttatattgaaaaattagaaacattgattagcaatttagagactcttcatattcataggcagaatcggcgcaaagagtcttgaaaaatg 514  Q
    ||||||||||||||| ||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| ||||||||| ||||||||||||    
T  41015377 cattggtaactgttacattgaaaaattagaaacattgattaccaattcagagactcttcatattcataggcagaatcagcgcaaagattcttgaaaaatg 41015278  T
Q  515 aaaagccacatttaatgggcatgaaggattgtttagagcgctaggttgaagggtactggatttgaaattcaaaaatggcattaaatgtggttaagtgcac 614  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  41015277 aaaagccacatttaatgggcatgaaggattgtttagagcgctaggttgaagggtactggatttgaaactcaaaaatggcattaaatgtggttaagtgcac 41015178  T
Q  615 aattttcccgctctaaatcaaggattagggttttgaaatacttatgtgcattgtactttaggattagataata 687  Q
    |||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||    
T  41015177 aattttcccgctctaaatcaaggattagagttttgaaatagttatgtgcattgtactttaggattagataata 41015105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 573 - 692
Target Start/End: Original strand, 1605267 - 1605385
Alignment:
Q  573 gatttgaaattcaaaaatggcattaaatgtggttaagtgcacaattttcccgctctaaatcaaggattagggttttgaaatacttatgtgcattgtactt 672  Q
    ||||||||||||||||||| |||||| ||||||||| |||| ||||||||||||||||||||||||||||||||||  |||| || | ||||| ||| ||    
T  1605267 gatttgaaattcaaaaatgtcattaagtgtggttaa-tgcataattttcccgctctaaatcaaggattagggttttacaatagttgtatgcatcgtagtt 1605365  T
Q  673 taggattagataataatgat 692  Q
    ||||||||||||||||||||    
T  1605366 taggattagataataatgat 1605385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 563 - 688
Target Start/End: Complemental strand, 11142831 - 11142707
Alignment:
Q  563 aagggtactggatttgaaattcaaaaatggcattaaatgtggttaagtgcacaattttcccgctctaaatcaaggattagggttttgaaatacttatgtg 662  Q
    ||||||||  ||||||||||||||||||| |||||||||||||||| |  ||||||||||||||| ||  ||| ||||||||||||| |||  |||||||    
T  11142831 aagggtacatgatttgaaattcaaaaatgccattaaatgtggttaaata-acaattttcccgctcaaagccaatgattagggttttgcaattgttatgtg 11142733  T
Q  663 cattgtactttaggattagataataa 688  Q
    ||||||| ||||||||||||||||||    
T  11142732 cattgtagtttaggattagataataa 11142707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 563 - 702
Target Start/End: Original strand, 1662526 - 1662664
Alignment:
Q  563 aagggtactggatttgaaattcaaaaatggcattaaatgtggttaagtgcacaattttcccgctctaaatc-aaggattagggttttgaaatacttatgt 661  Q
    ||||||||  ||||||||||||||||||| |||||||| ||||||| | |||||||||||||||| ||||| |||||||||||||||| |||  || |||    
T  1662526 aagggtacatgatttgaaattcaaaaatgacattaaatatggttaaat-cacaattttcccgctc-aaatctaaggattagggttttgcaattgttgtgt 1662623  T
Q  662 gcattgtactttaggattagataataatgatgatgtccatc 702  Q
    |||||||| |||||||||||||||||| ||| |||| ||||    
T  1662624 gcattgtagtttaggattagataataaggattatgtgcatc 1662664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 87; Significance: 2e-41; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 574 - 688
Target Start/End: Original strand, 4328782 - 4328896
Alignment:
Q  574 atttgaaattcaaaaatggcattaaatgtggttaagtgcacaattttcccgctctaaatcaaggattagggttttgaaatacttatgtgcattgtacttt 673  Q
    ||||||||||||||| | |||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||| | || |||||||||||||||    
T  4328782 atttgaaattcaaaattagcattaaatgtggttaagtgcacaattttcccgctcaaaaccaaggattagggttttgaaaaagttgtgtgcattgtacttt 4328881  T
Q  674 aggattagataataa 688  Q
    |||||||||||||||    
T  4328882 aggattagataataa 4328896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 563 - 688
Target Start/End: Original strand, 29395391 - 29395515
Alignment:
Q  563 aagggtactggatttgaaattcaaaaatggcattaaatgtggttaagtgcacaattttcccgctctaaatcaaggattagggttttgaaatacttatgtg 662  Q
    ||||||||  ||||||||||||||||||| |||||||||||||||| | |||||||||||||||| ||  ||| ||||||||||||| |||  || ||||    
T  29395391 aagggtacatgatttgaaattcaaaaatgtcattaaatgtggttaaat-cacaattttcccgctcaaagccaatgattagggttttgcaattgttgtgtg 29395489  T
Q  663 cattgtactttaggattagataataa 688  Q
    ||||||| ||||||||||||||||||    
T  29395490 cattgtagtttaggattagataataa 29395515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 563 - 688
Target Start/End: Original strand, 30410795 - 30410919
Alignment:
Q  563 aagggtactggatttgaaattcaaaaatggcattaaatgtggttaagtgcacaattttcccgctctaaatcaaggattagggttttgaaatacttatgtg 662  Q
    ||||||||  ||||||||||||||||||| |||||||||||||||| | |||||||||||||||| ||  ||||||||||||||||| |||  || ||||    
T  30410795 aagggtacatgatttgaaattcaaaaatgccattaaatgtggttaaat-cacaattttcccgctcaaagccaaggattagggttttgcaattgttgtgtg 30410893  T
Q  663 cattgtactttaggattagataataa 688  Q
    ||||||| ||||| ||||||||||||    
T  30410894 cattgtagtttagaattagataataa 30410919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 563 - 688
Target Start/End: Complemental strand, 35162082 - 35161958
Alignment:
Q  563 aagggtactggatttgaaattcaaaaatggcattaaatgtggttaagtgcacaattttcccgctctaaatcaaggattagggttttgaaatacttatgtg 662  Q
    ||||||||  ||||||||||||||||||| |||||||| ||||||| | || ||||||||||||| ||  ||||||||||||||||| |||  || ||||    
T  35162082 aagggtacatgatttgaaattcaaaaatgccattaaatttggttaaat-cataattttcccgctcaaatccaaggattagggttttgcaattgttgtgtg 35161984  T
Q  663 cattgtactttaggattagataataa 688  Q
    ||||||| ||||||||||||||||||    
T  35161983 cattgtagtttaggattagataataa 35161958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 617 - 688
Target Start/End: Original strand, 28549359 - 28549430
Alignment:
Q  617 ttttcccgctctaaatcaaggattagggttttgaaatacttatgtgcattgtactttaggattagataataa 688  Q
    ||||||||||| ||||||||||||||||||||  |   ||| |||||||||||| ||||||||||| |||||    
T  28549359 ttttcccgctcaaaatcaaggattagggttttttaggtcttgtgtgcattgtacattaggattagaaaataa 28549430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 617 - 688
Target Start/End: Complemental strand, 41867059 - 41866988
Alignment:
Q  617 ttttcccgctctaaatcaaggattagggttttgaaatacttatgtgcattgtactttaggattagataataa 688  Q
    ||||||||||| ||||||||||||||||||||  |   ||| |||||||||||| ||||||||||| |||||    
T  41867059 ttttcccgctcaaaatcaaggattagggttttttaggtcttgtgtgcattgtacattaggattagaaaataa 41866988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 86; Significance: 1e-40; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 153 - 692
Target Start/End: Complemental strand, 34576145 - 34575598
Alignment:
Q  153 ctatgtcagttaatggatttggatccaagggtgctgcaagaaacagataacaacataataagcgtgttattcata--------gatagtcaaaccaaaac 244  Q
    |||| |||||||||||||| ||||||||||| ||||||| ||| | ||| |||||||| || |||||||||||||        |||||||||   |||||    
T  34576145 ctatatcagttaatggattgggatccaagggcgctgcaacaaaaatataccaacataagaaacgtgttattcataaatacatagatagtcaataaaaaac 34576046  T
Q  245 gcaaattcagaatacaaaatgatgtaagatgaaaggtaatacatggccgttaacatctggtatgacaaaaaggtctggatgttattgtgtgccatgacag 344  Q
    |   ||||| || |||||||||||| |||   ||||||||||||| |  |||||||||||| |||||||||  ||||||| ||||| |   ||||| ||     
T  34576045 gattattcaaaaaacaaaatgatgtcagaattaaggtaatacatgcctattaacatctggtgtgacaaaaaattctggatattatttt---ccatggcaa 34575949  T
Q  345 aatgggagagattggaagtgatgggaaatcaga--aaggtgattcatatttatacaatcatattgtgcattccattggtaactgttatattgaaaaatta 442  Q
    |||||||  ||||||||||||||||||  ||    ||  | | |||||||||||||||||||| ||||||   | |||||||||||| |||| ||| ||     
T  34575948 aatgggac-gattggaagtgatgggaacgcatgccaaaatcaatcatatttatacaatcatatggtgcatggaaatggtaactgttacattggaaagttg 34575850  T
Q  443 gaaacat--tgattagcaatttagagactcttcatattcataggcagaatcggcgcaaagagtcttgaaaaatgaaaagccacatttaatgggcatgaag 540  Q
    |||||||  |||||| |||  ||||||||||||||| ||||   |||| ||   ||||| ||||| ||||||  |||     |||||||||| | ||| |    
T  34575849 gaaacatattgattaccaacgtagagactcttcatagtcatgtacagattccatgcaaatagtctggaaaaactaaagagtgcatttaatggccgtgagg 34575750  T
Q  541 gattgtttagagcgctaggt--tgaagggtactggatttgaaattcaaaaatggcattaaatgtggttaagtgcacaattttcccgctctaaatcaagga 638  Q
    ||| |||||  |||||| ||  | |||||||| ||||||||||||||||||||  ||||||||||||| | | |||| ||||||||||| ||  ||||||    
T  34575749 gatagtttaccgcgctatgtcattaagggtacaggatttgaaattcaaaaatgcaattaaatgtggtttaat-caca-ttttcccgctcaaatgcaagga 34575652  T
Q  639 ttagggttttgaaatacttatgtgcattgtactttaggattagataataatgat 692  Q
    ||||||||||| ||   || |||||||||||  |||||||||||||||||||||    
T  34575651 ttagggttttgcaaatgttgtgtgcattgtaggttaggattagataataatgat 34575598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 573 - 688
Target Start/End: Complemental strand, 13946765 - 13946651
Alignment:
Q  573 gatttgaaattcaaaaatggcattaaatgtggttaagtgcacaattttcccgctctaaatcaaggattagggttttgaaatacttatgtgcattgtactt 672  Q
    ||||||||||||||||||  |||||||||||||||| | |||||||||||||||| ||| ||||||||||||||||| |||  || ||||||||||| ||    
T  13946765 gatttgaaattcaaaaatcccattaaatgtggttaaat-cacaattttcccgctcaaaaccaaggattagggttttgcaattgttgtgtgcattgtagtt 13946667  T
Q  673 taggattagataataa 688  Q
    ||||||||||||||||    
T  13946666 taggattagataataa 13946651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 617 - 684
Target Start/End: Complemental strand, 33865671 - 33865605
Alignment:
Q  617 ttttcccgctctaaatcaaggattagggttttgaaatacttatgtgcattgtactttaggattagata 684  Q
    ||||||||||||||||||| |||||||||||| |  | ||| |||||||||||| |||||||||||||    
T  33865671 ttttcccgctctaaatcaaagattagggtttttaggt-cttgtgtgcattgtacattaggattagata 33865605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 75; Significance: 4e-34; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 563 - 693
Target Start/End: Complemental strand, 4865248 - 4865119
Alignment:
Q  563 aagggtactggatttgaaattcaaaaatggcattaaatgtggttaagtgcacaattttcccgctctaaatcaaggattagggttttgaaatacttatgtg 662  Q
    ||||||||  ||||||||||||||||||| |||||||||||||||| | |||||||||||||||| ||| ||||||||||||||||| |||  || ||||    
T  4865248 aagggtacatgatttgaaattcaaaaatgccattaaatgtggttaaat-cacaattttcccgctcaaaaccaaggattagggttttgcaattgttgtgtg 4865150  T
Q  663 cattgtactttaggattagataataatgatg 693  Q
    ||||||| |||||||||||||||||| ||||    
T  4865149 cattgtagtttaggattagataataaggatg 4865119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 563 - 688
Target Start/End: Original strand, 55041454 - 55041578
Alignment:
Q  563 aagggtactggatttgaaattcaaaaatggcattaaatgtggttaagtgcacaattttcccgctctaaatcaaggattagggttttgaaatacttatgtg 662  Q
    ||||||||  ||||||||||||||||||| |||||||||||||||| | |||||||||||||||| ||  ||||||||||||||||| |||  || ||||    
T  55041454 aagggtacatgatttgaaattcaaaaatgccattaaatgtggttaaat-cacaattttcccgctcaaagccaaggattagggttttgcaattgttgtgtg 55041552  T
Q  663 cattgtactttaggattagataataa 688  Q
    ||||||| ||||||||||||||||||    
T  55041553 cattgtagtttaggattagataataa 55041578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 597 - 688
Target Start/End: Original strand, 30766014 - 30766104
Alignment:
Q  597 aaatgtggttaagtgcacaattttcccgctctaaatcaaggattagggttttgaaatacttatgtgcattgtactttaggattagataataa 688  Q
    |||||| |||||| ||| ||||||||||||||||||||  ||||||||||||  |  | || ||||||||||| ||||||||||||||||||    
T  30766014 aaatgtagttaag-gcaaaattttcccgctctaaatcatagattagggttttagatgatttgtgtgcattgtagtttaggattagataataa 30766104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 617 - 684
Target Start/End: Original strand, 23217047 - 23217113
Alignment:
Q  617 ttttcccgctctaaatcaaggattagggttttgaaatacttatgtgcattgtactttaggattagata 684  Q
    |||||||||||||||||||||||||||||||| |  | ||| |||||||||||| |||||||| ||||    
T  23217047 ttttcccgctctaaatcaaggattagggtttttaggt-cttctgtgcattgtacattaggattggata 23217113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 418 - 688
Target Start/End: Complemental strand, 17831116 - 17830846
Alignment:
Q  418 tggtaactgttatattgaaaaattagaaacattgattagcaatttagagactcttcatattcataggcagaatcggcgcaaagagtcttgaaaaatgaaa 517  Q
    |||||||||||  |||| ||| |  |||||||||||||||||| ||||||||||||||| ||||   |||| |    ||||| ||| | ||||||  |||    
T  17831116 tggtaactgtttcattggaaagtaggaaacattgattagcaatgtagagactcttcatagtcatgtacagatttcatgcaaatagtttggaaaaactaaa 17831017  T
Q  518 agccacatttaatgggcatgaaggattgtttagagcgctaggt--tgaagggtactggatttgaaattcaaaaatggcattaaatgtggttaagtgcaca 615  Q
         |||||||||| | ||| |||| |||||  |||||| ||  | |||||||  ||||||||||||||||||||  ||||||| ||||||| | |||     
T  17831016 gagtgcatttaatggccgtgagggatagtttaccgcgctatgtcattaagggtataggatttgaaattcaaaaatgcaattaaatatggttaaat-cac- 17830919  T
Q  616 attttcccgctctaaatcaaggattagggttttgaaatacttatgtgcattgtactttaggattagataataa 688  Q
    |||||||||||| ||  ||||||||||||||||| ||   || |||||||||||  ||| |||||||||||||    
T  17830918 attttcccgctcaaatgcaaggattagggttttgcaaatgttgtgtgcattgtaggttatgattagataataa 17830846  T

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Target: chr6 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 617 - 684
Target Start/End: Complemental strand, 11074936 - 11074870
Alignment:
Q  617 ttttcccgctctaaatcaaggattagggttttgaaatacttatgtgcattgtactttaggattagata 684  Q
    |||||||||||||||||||||||||||||||| |  | ||| |||||||||||| |||||||||||||    
T  11074936 ttttcccgctctaaatcaaggattagggtttttaggt-cttgtgtgcattgtacattaggattagata 11074870  T

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Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 563 - 688
Target Start/End: Complemental strand, 32444602 - 32444478
Alignment:
Q  563 aagggtactggatttgaaattcaaaaatggcattaaatgtggttaagtgcacaattttcccgctctaaatcaaggattagggttttgaaatacttatgtg 662  Q
    |||| ||| ||||||||||||||||||||||||||| || ||||||  |||  | |||||||||| |||   |||||||||||||| ||    || | ||    
T  32444602 aaggatacaggatttgaaattcaaaaatggcattaagtgaggttaa-agcattagtttcccgctcaaaacttaggattagggtttttaatgttttgtttg 32444504  T
Q  663 cattgtactttaggattagataataa 688  Q
    ||||||| ||||||||||||||||||    
T  32444503 cattgtagtttaggattagataataa 32444478  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 618 - 688
Target Start/End: Original strand, 6309166 - 6309236
Alignment:
Q  618 tttcccgctctaaatcaaggattagggttttgaaatacttatgtgcattgtactttaggattagataataa 688  Q
    |||||||||| ||||| ||| ||| ||||||||||  ||| | | |||||||| |||||||||||||||||    
T  6309166 tttcccgctcaaaatctaggtttaaggttttgaaaggcttgtttacattgtacattaggattagataataa 6309236  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 563 - 608
Target Start/End: Complemental strand, 11178486 - 11178441
Alignment:
Q  563 aagggtactggatttgaaattcaaaaatggcattaaatgtggttaa 608  Q
    ||||||||  |||||||||||||||||||||||||| || ||||||    
T  11178486 aagggtacatgatttgaaattcaaaaatggcattaagtgaggttaa 11178441  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000007; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 617 - 688
Target Start/End: Complemental strand, 34703842 - 34703771
Alignment:
Q  617 ttttcccgctctaaatcaaggattagggttttgaaatacttatgtgcattgtactttaggattagataataa 688  Q
    ||||||||||| ||||||||||||||||||||  |   ||| |||||||||||| ||||||||||| |||||    
T  34703842 ttttcccgctcaaaatcaaggattagggttttttaggtcttgtgtgcattgtacattaggattagaaaataa 34703771  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 617 - 688
Target Start/End: Original strand, 43046273 - 43046344
Alignment:
Q  617 ttttcccgctctaaatcaaggattagggttttgaaatacttatgtgcattgtactttaggattagataataa 688  Q
    |||| |||||| ||||| ||| ||||||||||||||| ||| | | |||||||| ||||||||| |||||||    
T  43046273 tttttccgctcaaaatctaggtttagggttttgaaatgcttgtttacattgtacattaggattaaataataa 43046344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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