View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14411_high_32 (Length: 276)
Name: NF14411_high_32
Description: NF14411
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14411_high_32 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 245; Significance: 1e-136; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 16 - 276
Target Start/End: Original strand, 14741296 - 14741556
Alignment:
| Q |
16 |
gttccttcttgaacttctagtgaatttttaacacacatatacaatctccatactgtgtagtcgctctgaaaattacgcttaaaaaattagcgagtatcaa |
115 |
Q |
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| T |
14741296 |
gttccttcttgaacttctagtgaatttttaacaaacatatacaatctccatactgtgtagtcgctctgaaaattacgcttaaataattagtgagtatcta |
14741395 |
T |
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| Q |
116 |
atcaagacttgctaaaataaacaaaatcgaaactttatagataacaaaattagtaaatgaaagcaaacaacattactagcaataggtaacatgacaaacc |
215 |
Q |
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| T |
14741396 |
atcaagacttgctaaaataaacaaaatcgaaactttatagataacaaaattagtaaatgaaagcaaacaacattactagcaataggtaacatgacaaacc |
14741495 |
T |
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| Q |
216 |
tcagcttcaaggttaagggtcaccatatcaatactatgttggaaatttggattattctctt |
276 |
Q |
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| T |
14741496 |
tcagcttcaaggttaagggtcaccatatcaatactatgttggaaatttggattattctctt |
14741556 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 16 - 83
Target Start/End: Complemental strand, 14999402 - 14999335
Alignment:
| Q |
16 |
gttccttcttgaacttctagtgaatttttaacacacatatacaatctccatactgtgtagtcgctctg |
83 |
Q |
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| T |
14999402 |
gttccttcttgaacttctagcgtgtctttgacaaacatatacaatctcaacattgtgtagtcgctctg |
14999335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 16 - 83
Target Start/End: Complemental strand, 29468261 - 29468194
Alignment:
| Q |
16 |
gttccttcttgaacttctagtgaatttttaacacacatatacaatctccatactgtgtagtcgctctg |
83 |
Q |
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| T |
29468261 |
gttccttcttgaacttctagtgtgtttttaacaaacatatgcaatctaaacaatgtgtagtcgctctg |
29468194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 206 - 268
Target Start/End: Complemental strand, 29468049 - 29467987
Alignment:
| Q |
206 |
atgacaaacctcagcttcaaggttaagggtcaccatatcaatactatgttggaaatttggatt |
268 |
Q |
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| T |
29468049 |
atgacaaacctgagaatcaaggtcaagggtcaccatatcaatacgatctttgaaatttggatt |
29467987 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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