View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14411_high_38 (Length: 248)
Name: NF14411_high_38
Description: NF14411
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14411_high_38 |
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Alignment Details
Target: chr1 (Bit Score: 168; Significance: 4e-90; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 33185431 - 33185200
Alignment:
| Q |
1 |
tcctaactctttcttctctgctgcaaaacacacaa--catgatctgcaaactaattggtaaaccctcacaagaattgcaaaccaattgccatcgctgttg |
98 |
Q |
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| T |
33185431 |
tcctaactctttcttctctgctgcaaaacacacaaaacatgatctgcaaactaattggtaaaccctcacaagaattgcaaaccaattgccatcgctgat- |
33185333 |
T |
|
| Q |
99 |
ccttcgctggttgcactgctgccatcatcttccactgttcatgttccgtctatcttcctctgttctttgttctccttatagttcctctgttctttggtct |
198 |
Q |
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| T |
33185332 |
-----------tgcaccgctgccatcatctcccactgttcatgttccgtctatcttcctctattctttgttctccttatagttcctctgttctttggtct |
33185244 |
T |
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| Q |
199 |
tttggatttaatgttttgattaagacttgtgaaatattcttgga |
242 |
Q |
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| T |
33185243 |
tttggatttaatgttttgattaagacttgtgaaattttgttgga |
33185200 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 147 - 242
Target Start/End: Complemental strand, 33858442 - 33858347
Alignment:
| Q |
147 |
tctatcttcctctgttctttgttctccttat-agttcctctgttctttggtcttttggatttaatgttttgattaagacttgtgaaatattcttgga |
242 |
Q |
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| T |
33858442 |
tctatcttcctatgttctttgttctcttttttagttcctctgttctttggtcttttgga-ttaatgttttgattaagacttgtgaaattttgttgga |
33858347 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 147 - 242
Target Start/End: Original strand, 33922481 - 33922576
Alignment:
| Q |
147 |
tctatcttcctctgttctttgttctccttat-agttcctctgttctttggtcttttggatttaatgttttgattaagacttgtgaaatattcttgga |
242 |
Q |
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| T |
33922481 |
tctatcttcctatgttctttgttctcttttttagttcctctgttctttggtcttttgga-ttaatgttttgattaagacttgtgaaattttgttgga |
33922576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 118 - 242
Target Start/End: Complemental strand, 30213287 - 30213161
Alignment:
| Q |
118 |
tgccatcatcttccactgttcatgttccgtctatctt--cctctgttctttgttctccttatagttcctctgttctttggtcttttggatttaatgtttt |
215 |
Q |
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||||||| || |||||| |||||||||| |||||||| ||||| ||||||||| || || |||||||||||| ||||| |||||||||||||||||||| |
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| T |
30213287 |
tgccatcgtcgtccactattcatgttccatctatcttttcctctattctttgttttctttttagttcctctgtcctttgttcttttggatttaatgtttt |
30213188 |
T |
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| Q |
216 |
gattaagacttgtgaaatattcttgga |
242 |
Q |
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| T |
30213187 |
aactaagacttgtgaaattttgttgga |
30213161 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 126 - 227
Target Start/End: Complemental strand, 43631800 - 43631698
Alignment:
| Q |
126 |
tcttccactgttcatgttccgtctatcttcctct-gttctttgttctccttatagttcctctgttctttggtcttttggatttaatgttttgattaagac |
224 |
Q |
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||||||||||||||||| || |||||||||||| ||||||||||||| || || ||| | |||||||| |||||||||||||||||||||||| |||| |
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| T |
43631800 |
tcttccactgttcatgtcccagctatcttcctctagttctttgttctctttttatttcatatgttcttttttcttttggatttaatgttttgattgagac |
43631701 |
T |
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| Q |
225 |
ttg |
227 |
Q |
| |
|
||| |
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|
| T |
43631700 |
ttg |
43631698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 147 - 190
Target Start/End: Original strand, 43853991 - 43854034
Alignment:
| Q |
147 |
tctatcttcctctgttctttgttctccttatagttcctctgttc |
190 |
Q |
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|||||||||||||||||||||||||| || ||||||||| |||| |
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| T |
43853991 |
tctatcttcctctgttctttgttctctttttagttcctcggttc |
43854034 |
T |
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