View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14411_high_41 (Length: 240)

Name: NF14411_high_41
Description: NF14411
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14411_high_41
NF14411_high_41
[»] scaffold0642 (1 HSPs)
scaffold0642 (161-211)||(8869-8919)
[»] scaffold0345 (1 HSPs)
scaffold0345 (161-211)||(18782-18832)
[»] scaffold0105 (3 HSPs)
scaffold0105 (161-211)||(20150-20200)
scaffold0105 (106-164)||(19746-19804)
scaffold0105 (3-44)||(18865-18906)
[»] chr4 (3 HSPs)
chr4 (161-211)||(8193494-8193544)
chr4 (106-164)||(8193090-8193148)
chr4 (3-44)||(8192290-8192331)


Alignment Details
Target: scaffold0642 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: scaffold0642
Description:

Target: scaffold0642; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 161 - 211
Target Start/End: Complemental strand, 8919 - 8869
Alignment:
Q  161 gtcactgtacatcgaaggtatgcactctgacatcgcaatctttattttttc 211  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8919 gtcactgtacatcgaaggtatgcactctgacatcgcaatctttattttttc 8869  T

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Target: scaffold0345 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: scaffold0345
Description:

Target: scaffold0345; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 161 - 211
Target Start/End: Complemental strand, 18832 - 18782
Alignment:
Q  161 gtcactgtacatcgaaggtatgcactctgacatcgcaatctttattttttc 211  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18832 gtcactgtacatcgaaggtatgcactctgacatcgcaatctttattttttc 18782  T

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Target: scaffold0105 (Bit Score: 51; Significance: 2e-20; HSPs: 3)
Name: scaffold0105
Description:

Target: scaffold0105; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 161 - 211
Target Start/End: Original strand, 20150 - 20200
Alignment:
Q  161 gtcactgtacatcgaaggtatgcactctgacatcgcaatctttattttttc 211  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20150 gtcactgtacatcgaaggtatgcactctgacatcgcaatctttattttttc 20200  T

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Target: scaffold0105; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 106 - 164
Target Start/End: Original strand, 19746 - 19804
Alignment:
Q  106 cttctatgagaaaaagaaccgctacggcagttgaagctttataaaaaatgttttagtca 164  Q
    |||||||||||||||||||||||| ||  ||||||||||||||||||||||||||||||    
T  19746 cttctatgagaaaaagaaccgctagggtggttgaagctttataaaaaatgttttagtca 19804  T

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Target: scaffold0105; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 3 - 44
Target Start/End: Original strand, 18865 - 18906
Alignment:
Q  3 aacttttgcgtagtaacagaaagtaaaaataataataataat 44  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  18865 aacttttgcgtagtaacagaaagtaaaaataataataataat 18906  T

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Target: chr4 (Bit Score: 51; Significance: 2e-20; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 161 - 211
Target Start/End: Original strand, 8193494 - 8193544
Alignment:
Q  161 gtcactgtacatcgaaggtatgcactctgacatcgcaatctttattttttc 211  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8193494 gtcactgtacatcgaaggtatgcactctgacatcgcaatctttattttttc 8193544  T

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Target: chr4; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 106 - 164
Target Start/End: Original strand, 8193090 - 8193148
Alignment:
Q  106 cttctatgagaaaaagaaccgctacggcagttgaagctttataaaaaatgttttagtca 164  Q
    |||||||||||||||||||||||| ||  ||||||||||||||||||||||||||||||    
T  8193090 cttctatgagaaaaagaaccgctagggtggttgaagctttataaaaaatgttttagtca 8193148  T

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Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 3 - 44
Target Start/End: Original strand, 8192290 - 8192331
Alignment:
Q  3 aacttttgcgtagtaacagaaagtaaaaataataataataat 44  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  8192290 aacttttgcgtagtaacagaaagtaaaaataataataataat 8192331  T

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