View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14411_high_42 (Length: 240)
Name: NF14411_high_42
Description: NF14411
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14411_high_42 |
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Alignment Details
Target: chr8 (Bit Score: 140; Significance: 2e-73; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 1 - 156
Target Start/End: Original strand, 36055336 - 36055491
Alignment:
| Q |
1 |
atagagatatgaaatagtcaacgagacttttcgaaagaatcaattttaaaataaatcaattataaagttggatcataatattaaactcgttcataaatgc |
100 |
Q |
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| T |
36055336 |
atagagatatgagatagtcaacgagacttttcgaaagaatcaactttaaaataaatcaattttaaagttggatcataatattaaattcgttcataaatgc |
36055435 |
T |
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| Q |
101 |
aaaccaattatgaaccgattttaaactaaattggaaatggtttgacaattaactgg |
156 |
Q |
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| T |
36055436 |
aaaccaattatgaaccgattttaaactaaattggaaatggtttgacaattaactgg |
36055491 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 181 - 224
Target Start/End: Original strand, 36055626 - 36055669
Alignment:
| Q |
181 |
atatagcgagaaaattcataccaagataatcacgacgtgcaaat |
224 |
Q |
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| T |
36055626 |
atatagcgagaaaattcatcccaagataatcacgacgtgcaaat |
36055669 |
T |
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