View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14411_low_10 (Length: 473)
Name: NF14411_low_10
Description: NF14411
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14411_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 424; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 424; E-Value: 0
Query Start/End: Original strand, 4 - 459
Target Start/End: Complemental strand, 34592717 - 34592262
Alignment:
| Q |
4 |
ctacaaaattgaccttatattgttctttagatcatatttctatgattttgattatatcttatatgaaaaatatgcagcattcaactcaatcgtttgtttc |
103 |
Q |
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| T |
34592717 |
ctacaaaattgaccttatattgttttttagatcatatttctatgattttgattatatcttatatgaaaaatatgcagcattcaactcaattgtttgtttc |
34592618 |
T |
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| Q |
104 |
aaaagaaatctccgctgaaatagattctcatgcttgtaagatgtatgtcttgacacccacgagctagtttcaagtggaagagctgaaattattgttcaat |
203 |
Q |
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| T |
34592617 |
aaaagaaatctccgctgaaatagattctcatgcttgtaagatgtatgtcttgacacccacgagctagtttcaagtggaagagctgaagttattgttcaat |
34592518 |
T |
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| Q |
204 |
catattaattttcaataagatgtactagaataaattcatatatatgttggactaatgatgctatatgtgtttgtaattttgatgcattaagacgatctta |
303 |
Q |
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| T |
34592517 |
catattaattttcaataagatgtgctagaataaattcatatatatgttggattaatgatgctatatgtgtttgtaattttgatgcattaagacgatctta |
34592418 |
T |
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| Q |
304 |
atatcatggaaatgtatgacttttccttcttgatgcaatttgaaagccaattaagcttattatttacttttgaaacatttcataaaataaattttaaaca |
403 |
Q |
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| T |
34592417 |
atatcatggaaatgtatgacttttccttcttgatgcaatttgaaagccaattaagcttattatttactttcaaaacatttcataaaataaattttaaaca |
34592318 |
T |
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| Q |
404 |
cccttcggtttttaaaactgtacctggcttaatcattcagttttttcattttcttc |
459 |
Q |
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| T |
34592317 |
cccttcggtttttaaaactgtacctggcttaaccattcagttttttcattttcttc |
34592262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 124 - 160
Target Start/End: Complemental strand, 32589350 - 32589314
Alignment:
| Q |
124 |
tagattctcatgcttgtaagatgtatgtcttgacacc |
160 |
Q |
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| T |
32589350 |
tagattcacatgcttgtaagatgtatgttttgacacc |
32589314 |
T |
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