View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14411_low_12 (Length: 444)

Name: NF14411_low_12
Description: NF14411
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14411_low_12
NF14411_low_12
[»] chr7 (12 HSPs)
chr7 (5-437)||(23856487-23856935)
chr7 (165-436)||(23860705-23860976)
chr7 (169-437)||(23864255-23864523)
chr7 (151-437)||(23839833-23840118)
chr7 (151-437)||(23843557-23843843)
chr7 (337-413)||(23853287-23853363)
chr7 (313-439)||(23815642-23815768)
chr7 (337-413)||(23850896-23850972)
chr7 (337-413)||(23855810-23855886)
chr7 (310-413)||(23827314-23827417)
chr7 (315-439)||(23801011-23801135)
chr7 (312-439)||(23805770-23805897)


Alignment Details
Target: chr7 (Bit Score: 304; Significance: 1e-171; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 5 - 437
Target Start/End: Original strand, 23856487 - 23856935
Alignment:
Q  5 aatctcataaacctttgataactataaccttagatgtcacatggagaaatctttgattacaaactatgattttaaaatgaaaccctaacagcaaaa---- 100  Q
    |||||| ||||  ||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| ||||||||||        
T  23856487 aatctcctaaatgtttgacaactataaccttagatgtcacatggagaaatctctgattacaaactatgattttgaaatgaaaccccaacagcaaaaatcc 23856586  T
Q  101 ------------tattaataacaatcagaaacatgaaattctgagtctattttgaagcaaataggctctcatagtgagctttgaaataagcaaaaagagg 188  Q
                ||||||||||||||| |||||||||||||| ||||||||||||| |||| || |||||||||||||||||||| || ||||| |||||    
T  23856587 gatgacaaataatattaataacaatcacaaacatgaaattctaagtctattttgaatcaaagagactctcatagtgagctttgaagtaggcaaagagagg 23856686  T
Q  189 ttctctaggaggcatattttcctgaacaactggatggttgagaaattcttggctccacttggaaagttttggacacttttcagcattcaacaattgcaac 288  Q
    ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||    
T  23856687 ttctctaggaggcatattttccttaacaattggatggttgagaaattcttggctccacttcgaaagtttgggacacttttcagcattcaacaattgcaac 23856786  T
Q  289 cctgttatgtcttgaatcaaagggatccaaaaagctatgtacacagctgcaatatccacaattccaatctcctcacctccaaagaacttgttcttcagct 388  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||    
T  23856787 cctgttatttcttgaatcaaagggatccaaaaagctatgtacacagctgcaatatccacaattccaatctcctcacctccaaagaacttgtccttcaact 23856886  T
Q  389 cattctcaagaatttgtagagcctcaattgttccttcaacattcttctc 437  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||    
T  23856887 cattctcaagaatctgtagagcctcaattgttccttcaacattcttctc 23856935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 165 - 436
Target Start/End: Original strand, 23860705 - 23860976
Alignment:
Q  165 agctttgaaataagcaaaaagaggttctctaggaggcatattttcctgaacaactggatggttgagaaattcttggctccacttggaaagttttggacac 264  Q
    |||||||||| | ||||||||||| ||||||| ||||| || |||||  ||| | |||||||||||||||||||||||||| ||| |||| |||||| ||    
T  23860705 agctttgaaaaatgcaaaaagagggtctctagcaggcacatgttccttcacagcaggatggttgagaaattcttggctccatttgtaaagctttggatac 23860804  T
Q  265 ttttcagcattcaacaattgcaaccctgttatgtcttgaatcaaagggatccaaaaagctatgtacacagctgcaatatccacaattccaatctcctcac 364  Q
    ||||||||||| ||||||| |||  | | |||||||||||||||||||||||||||||||||| ||||||| |||||||||||||    |||||| || |    
T  23860805 ttttcagcattgaacaatttcaattcagctatgtcttgaatcaaagggatccaaaaagctatgaacacagcagcaatatccacaaagttaatctcttctc 23860904  T
Q  365 ctccaaagaacttgttcttcagctcattctcaagaatttgtagagcctcaattgttccttcaacattcttct 436  Q
    | |||||| |||||||||||||||||||||||||||| || ||||||||  ||| | |||||||||||||||    
T  23860905 ccccaaagtacttgttcttcagctcattctcaagaatctgcagagcctcggttgattcttcaacattcttct 23860976  T

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Target: chr7; HSP #3
Raw Score: 121; E-Value: 8e-62
Query Start/End: Original strand, 169 - 437
Target Start/End: Original strand, 23864255 - 23864523
Alignment:
Q  169 ttgaaataagcaaaaagaggttctctaggaggcatattttcctgaacaactggatggttgagaaattcttggctccacttggaaagttttggacactttt 268  Q
    |||||||  ||||||||||| |||||| |||||| ||| ||||  |||| ||||||||||||||||||||||||||| ||| |||| |||||| ||||||    
T  23864255 ttgaaatttgcaaaaagagggtctctaagaggcacattctccttcacaattggatggttgagaaattcttggctccatttgtaaagctttggatactttt 23864354  T
Q  269 cagcattcaacaattgcaaccctgttatgtcttgaatcaaagggatccaaaaagctatgtacacagctgcaatatccacaattccaatctcctcacctcc 368  Q
    ||||| | ||| ||| ||||||| ||| |||||||| |||||||||||||||||||||| ||||||| | |||||||||||  ||||||||||| || ||    
T  23864355 cagcagtgaaccatttcaaccctattaagtcttgaaacaaagggatccaaaaagctatgaacacagcagaaatatccacaaaaccaatctcctctccccc 23864454  T
Q  369 aaagaacttgttcttcagctcattctcaagaatttgtagagcctcaattgttccttcaacattcttctc 437  Q
    ||||||||||| ||||||||||||||| ||||| || |||||  || ||| | |||||| |||||||||    
T  23864455 aaagaacttgtccttcagctcattctcgagaatctgcagagctccagttgattcttcaatattcttctc 23864523  T

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Target: chr7; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 151 - 437
Target Start/End: Original strand, 23839833 - 23840118
Alignment:
Q  151 aggctctcatagtgagctttgaaataagcaaaaagaggttctctaggaggcatattttcctgaacaactggatggttgagaaattcttggctccacttgg 250  Q
    |||||||||||| || |||| ||| | || |||||||| ||||| ||||| ||| ||||||  ||||| |||||||  ||||||||||| ||||| |||     
T  23839833 aggctctcatagcgacctttaaaaaaggcgaaaagaggctctcttggaggaatagtttccttcacaacaggatggtcaagaaattcttgactccaattgt 23839932  T
Q  251 aaagttttggacacttttcagcattcaacaattgcaaccctgttatgtcttgaatcaaagggatccaaaaagctatgtacacagctgcaatatccacaat 350  Q
    |||| |||||| ||||||||||  | ||||||||||||||| ||||||||||||  | |||||||| | | |||| | | ||||| |||||||||||||     
T  23839933 aaagctttggaaacttttcagctgtgaacaattgcaaccctattatgtcttgaactagagggatcc-agatgctacgaaaacagcagcaatatccacaaa 23840031  T
Q  351 tccaatctcctcacctccaaagaacttgttcttcagctcattctcaagaatttgtagagcctcaattgttccttcaacattcttctc 437  Q
       || ||| || ||||||||| ||||   |||||||||||||| |||||  || ||||||||| ||||| |||| |||||||||||    
T  23840032 gttaaactcttctcctccaaagtacttacccttcagctcattctgaagaaactgaagagcctcagttgtttcttcgacattcttctc 23840118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 151 - 437
Target Start/End: Original strand, 23843557 - 23843843
Alignment:
Q  151 aggctctcatagtgagctttgaaataagcaaaaagaggttctctaggaggcatattttcctgaacaactggatggttgagaaattcttggctccacttgg 250  Q
    |||||||||||  || |||| ||| | || |||||||| ||||||||||| | | ||||||  ||||| |||||||  ||||||||||| ||||| |||     
T  23843557 aggctctcataacgacctttaaaaaaggcgaaaagaggctctctaggaggaagagtttccttcacaacaggatggtcaagaaattcttgactccaattgt 23843656  T
Q  251 aaagttttggacacttttcagcattcaacaattgcaaccctgttatgtcttgaatcaaagggatccaaaaagctatgtacacagctgcaatatccacaat 350  Q
    |||| |||||  ||||||||||  | |||||||||| | | |||||||||||||  | ||||| |||||| |||| | | ||||| |||||||| ||||     
T  23843657 aaagctttgggaacttttcagctgtgaacaattgcagctcggttatgtcttgaactagagggacccaaaatgctacgaaaacagcagcaatatcgacaaa 23843756  T
Q  351 tccaatctcctcacctccaaagaacttgttcttcagctcattctcaagaatttgtagagcctcaattgttccttcaacattcttctc 437  Q
       || ||| || ||||||||| |||||| ||||||||||||||||||||  || ||||||||  ||| | |||||| |||||||||    
T  23843757 gttaaactcttctcctccaaagtacttgtccttcagctcattctcaagaaagtgaagagcctcggttgcttcttcaatattcttctc 23843843  T

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Target: chr7; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 337 - 413
Target Start/End: Complemental strand, 23853363 - 23853287
Alignment:
Q  337 gcaatatccacaattccaatctcctcacctccaaagaacttgttcttcagctcattctcaagaatttgtagagcctc 413  Q
    |||||||||||||  | ||||||||| |||||||||||||||| ||||||||||||||||||||  || ||||||||    
T  23853363 gcaatatccacaaagctaatctcctctcctccaaagaacttgtccttcagctcattctcaagaaactgcagagcctc 23853287  T

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Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 313 - 439
Target Start/End: Original strand, 23815642 - 23815768
Alignment:
Q  313 atccaaaaagctatgtacacagctgcaatatccacaattccaatctcctcacctccaaagaacttgttcttcagctcattctcaagaatttgtagagcct 412  Q
    |||||||||||||||   || |||||||| || ||||  ||||||||||| || |||||||| ||||  || |||||||||||||||| ||| |||||||    
T  23815642 atccaaaaagctatgagtacggctgcaatgtcaacaaagccaatctcctccccaccaaagaatttgtctttgagctcattctcaagaaattgaagagcct 23815741  T
Q  413 caattgttccttcaacattcttctcac 439  Q
    |  ||||| | |||| | |||||||||    
T  23815742 cttttgtttcctcaatactcttctcac 23815768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 337 - 413
Target Start/End: Complemental strand, 23850972 - 23850896
Alignment:
Q  337 gcaatatccacaattccaatctcctcacctccaaagaacttgttcttcagctcattctcaagaatttgtagagcctc 413  Q
    |||||||||||||  || || || || |||||||||||||||| ||||||||||||||||||||  || ||||||||    
T  23850972 gcaatatccacaaagcctatttcttctcctccaaagaacttgtccttcagctcattctcaagaaactgcagagcctc 23850896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 337 - 413
Target Start/End: Complemental strand, 23855886 - 23855810
Alignment:
Q  337 gcaatatccacaattccaatctcctcacctccaaagaacttgttcttcagctcattctcaagaatttgtagagcctc 413  Q
    |||||||||||||  |||||||| || ||||||||||||||||  ||||||| |||||||||||  || ||||||||    
T  23855886 gcaatatccacaaaaccaatctcttctcctccaaagaacttgtcattcagcttattctcaagaaactgcagagcctc 23855810  T

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Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 310 - 413
Target Start/End: Original strand, 23827314 - 23827417
Alignment:
Q  310 gggatccaaaaagctatgtacacagctgcaatatccacaattccaatctcctcacctccaaagaacttgttcttcagctcattctcaagaatttgtagag 409  Q
    |||| ||||||||||||| | || || |||||||| |||||||||||||| || || ||||||||  | | ||| |||||||||||||||| ||| | ||    
T  23827314 gggaaccaaaaagctatgaaaactgcagcaatatcaacaattccaatctcttctccaccaaagaaagtctccttaagctcattctcaagaacttgaaaag 23827413  T
Q  410 cctc 413  Q
    ||||    
T  23827414 cctc 23827417  T

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Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 315 - 439
Target Start/End: Original strand, 23801011 - 23801135
Alignment:
Q  315 ccaaaaagctatgtacacagctgcaatatccacaattccaatctcctcacctccaaagaacttgttcttcagctcattctcaagaatttgtagagcctca 414  Q
    |||||||| ||||  |||||| ||||| || ||||  ||||| ||||| || |||||||| |||| ||| ||||||||||||||||  || ||||||||     
T  23801011 ccaaaaagatatgaccacagcagcaatgtcaacaaaaccaatatcctccccaccaaagaatttgtccttgagctcattctcaagaaaatgaagagcctct 23801110  T
Q  415 attgttccttcaacattcttctcac 439  Q
     ||||| | |||| | |||||||||    
T  23801111 tttgtttcctcaatactcttctcac 23801135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 312 - 439
Target Start/End: Original strand, 23805770 - 23805897
Alignment:
Q  312 gatccaaaaagctatgtacacagctgcaatatccacaattccaatctcctcacctccaaagaacttgttcttcagctcattctcaagaatttgtagagcc 411  Q
    ||||||||||| ||||  |||||| ||||| || ||||  ||||| ||||| || |||||||| ||||  || |||||||||||||||| | | ||||||    
T  23805770 gatccaaaaagatatgatcacagcagcaatgtcaacaaaaccaatatcctctccaccaaagaatttgtctttgagctcattctcaagaaatcgaagagcc 23805869  T
Q  412 tcaattgttccttcaacattcttctcac 439  Q
    ||  ||||| | |||| | |||||||||    
T  23805870 tcttttgtttcctcaatactcttctcac 23805897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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