View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14411_low_15 (Length: 420)

Name: NF14411_low_15
Description: NF14411
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14411_low_15
NF14411_low_15
[»] chr1 (4 HSPs)
chr1 (5-270)||(32581847-32582113)
chr1 (5-184)||(32631180-32631359)
chr1 (5-185)||(32600066-32600246)
chr1 (5-184)||(32657069-32657251)
[»] chr8 (3 HSPs)
chr8 (7-144)||(41146980-41147117)
chr8 (45-178)||(41163709-41163843)
chr8 (5-161)||(41171844-41172000)
[»] chr5 (1 HSPs)
chr5 (45-185)||(21016110-21016251)
[»] chr6 (2 HSPs)
chr6 (45-185)||(26398163-26398304)
chr6 (6-78)||(26404661-26404733)
[»] scaffold0259 (1 HSPs)
scaffold0259 (9-60)||(21394-21445)


Alignment Details
Target: chr1 (Bit Score: 211; Significance: 1e-115; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 5 - 270
Target Start/End: Complemental strand, 32582113 - 32581847
Alignment:
Q  5 gactgttgacagtgatgatgacgaaatcgaatgtgaatcttttggtgatggtttcgggaggaaagctatcaagcgtccatcaattgaattcaaggagtgt 104  Q
    ||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32582113 gactgtttacagtgatgatgacgaaatcgaatttgaatcttttggtgatggtttcgggaggaaagctatcaagcgtccatcaattgaattcaaggagtgt 32582014  T
Q  105 tcagagaataagtaatgctttgattttaagttgacaaaacagtgtgataagccatttgaggaagaacttgtagaggctgctgttgtttactgcatcctcc 204  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  32582013 tcagagaataagtaatgctttgattttaagttgacaaaacagtgtgataagccatttgaggaagaacttgtagaggctcctgttgtttactgcatcctcc 32581914  T
Q  205 ttggaggggctgctcttctcca-cccccaccccgacaaacacatttttgctgttataatttaatttc 270  Q
    ||||||||||||||   ||||| |||||||||||||||  |||||| |||||| | | |||||||||    
T  32581913 ttggaggggctgctaaactccaccccccaccccgacaacaacatttatgctgtaaaactttaatttc 32581847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 156; E-Value: 9e-83
Query Start/End: Original strand, 5 - 184
Target Start/End: Complemental strand, 32631359 - 32631180
Alignment:
Q  5 gactgttgacagtgatgatgacgaaatcgaatgtgaatcttttggtgatggtttcgggaggaaagctatcaagcgtccatcaattgaattcaaggagtgt 104  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  32631359 gactgttgacagtgatgatgacgaaatcgaatttgaatcttttggtgatggtttcgggaggaaagctatccagcgtccatcaattgaattcaaggagtgt 32631260  T
Q  105 tcagagaataagtaatgctttgattttaagttgacaaaacagtgtgataagccatttgaggaagaacttgtagaggctgc 184  Q
    |||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||| |||||    
T  32631259 tcagagaacaagtaatgctttgattttaagtagacaaaacagtgtgataagccatttgaggaagaaattgtagaagctgc 32631180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 5 - 185
Target Start/End: Complemental strand, 32600246 - 32600066
Alignment:
Q  5 gactgttgacagtgatgatgacgaaatcgaatgtgaatcttttggtgatggtttcgggaggaaagctatcaagcgtccatcaattgaattcaaggagtgt 104  Q
    |||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  32600246 gactgttgacagtgatgatgacgaaatcgaatttggatcttttggtgatggtttcgggaggaaagctatcaagcgtccaacaattgaattcaaggagtgt 32600147  T
Q  105 tcagagaataagtaatgctttgattttaagttgacaaaacagtgtgataagccatttgaggaagaacttgtagaggctgct 185  Q
    |||||||| ||||||| |||||||||||||| ||||| |||||||||||||||||||||| ||||||||||||| ||||||    
T  32600146 tcagagaacaagtaatactttgattttaagtagacaagacagtgtgataagccatttgagaaagaacttgtagaagctgct 32600066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 5 - 184
Target Start/End: Complemental strand, 32657251 - 32657069
Alignment:
Q  5 gactgttgacagtgatgatgacgaaatcgaatgtgaatcttttggtgatggtttcgggaggaaagctatcaagcgtccatcaattgaattcaaggagtgt 104  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  32657251 gactgttgacagtgatgatgacgaaatcgaatttgaatcttttggtgatggtttcgggaggaaagctatcaagcgtccatcaattgaattcaaggagtgc 32657152  T
Q  105 tcagagaataagtaatgctttgattttaagttgacaaaacagtgtgataa---gccatttgaggaagaacttgtagaggctgc 184  Q
    |||||||| |||||||||||||||||||||| ||||||||||| ||||||   |||||||||||||||| ||| ||| |||||    
T  32657151 tcagagaacaagtaatgctttgattttaagtagacaaaacagtctgataagccgccatttgaggaagaaattggagaagctgc 32657069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 78; Significance: 3e-36; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 7 - 144
Target Start/End: Complemental strand, 41147117 - 41146980
Alignment:
Q  7 ctgttgacagtgatgatgacgaaatcgaatgtgaatcttttggtgatggtttcgggaggaaagctatcaagcgtccatcaattgaattcaaggagtgttc 106  Q
    ||||||||||||||||||||||| | |||| || |||||||| |||||||||||| |||||||||||||||| |||||| || ||||||| ||||||| |    
T  41147117 ctgttgacagtgatgatgacgaagtggaatttggatcttttgatgatggtttcggaaggaaagctatcaagcatccatctatggaattcatggagtgtac 41147018  T
Q  107 agagaataagtaatgctttgattttaagttgacaaaac 144  Q
    |||||| ||| |||||||||||||| ||| ||||||||    
T  41147017 agagaacaagcaatgctttgattttgagtagacaaaac 41146980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 45 - 178
Target Start/End: Complemental strand, 41163843 - 41163709
Alignment:
Q  45 tttggtgatggtttcgggaggaaagctatcaagcgtccatcaattgaattcaaggagtgttcagagaataagtaatgctttgattttaagttgacaaaac 144  Q
    |||||| ||||||| |||| |||||||||||||| |||||| || ||||||| ||||| ||||||||| |   |||||||||||||| ||| ||||| ||    
T  41163843 tttggttatggttttgggatgaaagctatcaagcatccatctatggaattcatggagtattcagagaacacacaatgctttgattttgagtagacaagac 41163744  T
Q  145 agtgtgataagcca-tttgaggaagaacttgtaga 178  Q
    |||||||||||||| ||||||||||||||||||||    
T  41163743 agtgtgataagccattttgaggaagaacttgtaga 41163709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 5 - 161
Target Start/End: Complemental strand, 41172000 - 41171844
Alignment:
Q  5 gactgttgacagtgatgatgacgaaatcgaatgtgaatcttttggtgatggtttcgggaggaaagctatcaagcgtccatcaattgaattcaaggagtgt 104  Q
    |||||||||||| || ||||||||| | |||| || |||||||||||||||||| |||||| ||||||| |||| |||||  || || | |  |||||||    
T  41172000 gactgttgacagcgacgatgacgaagttgaatttggatcttttggtgatggttttgggagggaagctatgaagcatccatatatggattacttggagtgt 41171901  T
Q  105 tcagagaataagtaatgctttgattttaagttgacaaaacagtgtgataagccattt 161  Q
    |||||||| ||| |||||||||| ||| ||| ||||||  |||| ||||||||||||    
T  41171900 tcagagaacaagcaatgctttgactttgagtagacaaagaagtgcgataagccattt 41171844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 78; Significance: 3e-36; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 45 - 185
Target Start/End: Original strand, 21016110 - 21016251
Alignment:
Q  45 tttggtgatggtttcgggaggaaagctatcaagcgtccatcaattgaattcaaggagtgttcagagaataagtaatgctttgattttaagttgacaaaac 144  Q
    |||||||||||||||||||||||||||||||||| |||||| || || |||| ||||||||||||||| | | |||||||||||||| ||| ||||||||    
T  21016110 tttggtgatggtttcgggaggaaagctatcaagcatccatctatggatttcatggagtgttcagagaacacgcaatgctttgattttgagtagacaaaac 21016209  T
Q  145 agtgtgataagcca-tttgaggaagaacttgtagaggctgct 185  Q
    |||||| ||||||| ||||||||| |||| ||||| ||||||    
T  21016210 agtgtggtaagccattttgaggaaaaactcgtagaagctgct 21016251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 74; Significance: 8e-34; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 45 - 185
Target Start/End: Complemental strand, 26398304 - 26398163
Alignment:
Q  45 tttggtgatggtttcgggaggaaagctatcaagcgtccatcaattgaattcaaggagtgttcagagaataagtaatgctttgattttaagttgacaaaac 144  Q
    |||||||||||||||||||||||||||||||||| |||||| |  || |||| ||||||||||||||| | | |||||||||||||| ||| ||||||||    
T  26398304 tttggtgatggtttcgggaggaaagctatcaagcatccatctacggatttcatggagtgttcagagaacacgcaatgctttgattttgagtagacaaaac 26398205  T
Q  145 agtgtgataagcca-tttgaggaagaacttgtagaggctgct 185  Q
    |||||| ||||||| ||||||||| |||| ||||| ||||||    
T  26398204 agtgtggtaagccattttgaggaaaaactcgtagatgctgct 26398163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 6 - 78
Target Start/End: Complemental strand, 26404733 - 26404661
Alignment:
Q  6 actgttgacagtgatgatgacgaaatcgaatgtgaatcttttggtgatggtttcgggaggaaagctatcaagc 78  Q
    |||||||||| ||| ||||||||| | |||| ||||||||||||||||||||| |   |||||||||||||||    
T  26404733 actgttgacaatgacgatgacgaagtggaatttgaatcttttggtgatggttttgaagggaaagctatcaagc 26404661  T

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Target: scaffold0259 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: scaffold0259
Description:

Target: scaffold0259; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 9 - 60
Target Start/End: Complemental strand, 21445 - 21394
Alignment:
Q  9 gttgacagtgatgatgacgaaatcgaatgtgaatcttttggtgatggtttcg 60  Q
    ||||| |||||||||||||||||||||| |||||||||||||||||||||||    
T  21445 gttgatagtgatgatgacgaaatcgaatttgaatcttttggtgatggtttcg 21394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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