View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14411_low_17 (Length: 417)
Name: NF14411_low_17
Description: NF14411
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14411_low_17 |
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Alignment Details
Target: chr4 (Bit Score: 245; Significance: 1e-136; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 146 - 402
Target Start/End: Complemental strand, 10327670 - 10327414
Alignment:
| Q |
146 |
cacgattgtatcaacatcagaagcaaataatatatcaaaacaaatattatcagaagcagaaaaatgtatctgattcaataaacaatgagatgcataaaaa |
245 |
Q |
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| T |
10327670 |
cacgattgtatcaacatcagaagcaaataatatatcaaaacaaatattatcagaagcagaaaaatgtatcagattcaataaacaatgagatgcataaaaa |
10327571 |
T |
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| Q |
246 |
gttaggagcaagaaacataaagaaaatgcgtgcaactaaagtttctatggtttctactacttctgcatcgtctccaacagagcattaatcccatcatttg |
345 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
10327570 |
gttaggagcaagaaacataaagaaaatgtgtgcaactaaagtttctatggtttctactacttctgcatcatctccaacagagcattaatcccatcatttg |
10327471 |
T |
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| Q |
346 |
tctgatcttgcttctttgccatatgtgcttgagtcttagccatttcagcttgctcct |
402 |
Q |
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| T |
10327470 |
tctgatcttgcttctttgccatatgtgcttgagtcttagccatttcagcttgctcct |
10327414 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 8 - 98
Target Start/End: Complemental strand, 10327808 - 10327718
Alignment:
| Q |
8 |
tgagatgaaggttttcctaaattaattttatttaacttagtggactcagagcctaaatgccattatatgtcttactcccccttttgtcatc |
98 |
Q |
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| T |
10327808 |
tgagaagaaggttttcctaaattaattttatttaacttagcggactcagagcctaaatgccattatatgtcttactcccccttttgtcatc |
10327718 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 57; Significance: 1e-23; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 26 - 98
Target Start/End: Original strand, 15552707 - 15552779
Alignment:
| Q |
26 |
aaattaattttatttaacttagtggactcagagcctaaatgccattatatgtcttactcccccttttgtcatc |
98 |
Q |
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| T |
15552707 |
aaattaattttatttaatttagtggactcagagcctaaatgtcattatatatcttactccccgttttgtcatc |
15552779 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 46 - 98
Target Start/End: Complemental strand, 19642988 - 19642936
Alignment:
| Q |
46 |
agtggactcagagcctaaatgccattatatgtcttactcccccttttgtcatc |
98 |
Q |
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| T |
19642988 |
agtggactcagagcctaaatactattatgtgtcttactcccccttttgtcatc |
19642936 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 8 - 98
Target Start/End: Original strand, 11514522 - 11514610
Alignment:
| Q |
8 |
tgagatgaaggttttcctaaattaattttatttaacttagtggactcagagcctaaatgccattatatgtcttactcccccttttgtcatc |
98 |
Q |
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| T |
11514522 |
tgagaagaaggttctcctaaattgatttt--ttaatttagtggacttagagcctaaatgatattacgtatcttactcccctttttttcatc |
11514610 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 8 - 96
Target Start/End: Complemental strand, 22996397 - 22996309
Alignment:
| Q |
8 |
tgagatgaaggttttcctaaattaattttatt--taacttagtggactcagagcctaaatgccattatatgtcttactcccccttttgtca |
96 |
Q |
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| T |
22996397 |
tgagaagaaggttctccaaaattaattttaatcttaatttagtggactcagagcctaaatgtta--atatgtcttactcccccttttgtca |
22996309 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 38 - 98
Target Start/End: Complemental strand, 17564659 - 17564602
Alignment:
| Q |
38 |
tttaacttagtggactcagagcctaaatgccattatatgtcttactcccccttttgtcatc |
98 |
Q |
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| T |
17564659 |
tttaacttagtggactgagagcctaaatgc--ttatatgtcttact-ccccttttgtcatc |
17564602 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 8 - 66
Target Start/End: Complemental strand, 11571732 - 11571674
Alignment:
| Q |
8 |
tgagatgaaggttttcctaaattaattttatttaacttagtggactcagagcctaaatg |
66 |
Q |
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| T |
11571732 |
tgagaagaagattctcctaaactaattttatttaatttagtggactcggagcctaaatg |
11571674 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 39 - 98
Target Start/End: Original strand, 9763416 - 9763473
Alignment:
| Q |
39 |
ttaacttagtggactcagagcctaaatgccattatatgtcttactcccccttttgtcatc |
98 |
Q |
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| T |
9763416 |
ttaacttagtggactcagagcctggatgctat--tatgtcttactcctccttttgtcatc |
9763473 |
T |
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