View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14411_low_2 (Length: 708)
Name: NF14411_low_2
Description: NF14411
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14411_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 654; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 654; E-Value: 0
Query Start/End: Original strand, 1 - 694
Target Start/End: Original strand, 14741535 - 14742227
Alignment:
| Q |
1 |
tggaaatttggattattctctttaacaatctctaatgccttgaggaggttatcaggagacaacttggggatggcattcgcaagtctggacttctcggaaa |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
14741535 |
tggaaatttggattattctctttaacaatctctaatgccttaaggaggttatcaggagacaacttggggatggcattcgcaagtctggacttctccgaaa |
14741634 |
T |
|
| Q |
101 |
gtgacaacttcctacaatattctcaacaacagaacataataaacaacatagttccataacatgaccaaaaggaaatgcatcatgaattctcagtggccta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14741635 |
gtgacaacttcctacaatattctcaacaacagaacataataaacaacatagttccataacatgaccaaaaggaaatgcatcatgaattctcagtggccta |
14741734 |
T |
|
| Q |
201 |
tttagaggagcaaagttggtgctataaaatataacattgaatagtaggttattcgatcttgatcagatgattcagatccatgagagcgtaagcgtgtcga |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||| |||||||||||| |
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| T |
14741735 |
tttagaggagcaaagttggtgctataaaatataacattgaatagtaagttattcgatcttgatcagataattcagatccatgagagcataagcgtgtcga |
14741834 |
T |
|
| Q |
301 |
tgatatcaaaatctattaaactcctaccatgtagcactattttggcaatttgaacatgagactacaaaaatgaaaataatgggtgattctttcacgaacc |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14741835 |
tgatatcaaaatctattaaactcctaccatgtagcactattttggcaatttgaacatgagactacaaaaatgaaaataatgggtgattctttcacgaacc |
14741934 |
T |
|
| Q |
401 |
tgcactgtgcaatcattgttgttttgagacttctcaaagccgtctcaacattggacagctgaagcaacaaaaattaaatgcataagttaatcttctgata |
500 |
Q |
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| T |
14741935 |
tgcactgtgcaatcattgttgttttgagacttctcaaagccgtctcaacattggacagctgaagcaacaaaaattaaatgcataagttaatcttctgata |
14742034 |
T |
|
| Q |
501 |
tatttcttatgataaccatacaaatattaaatttaaacacaactttgcaaaataaaaatgatgaaccaacctcagtacttaattctctagtcttgtttgc |
600 |
Q |
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||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14742035 |
tatttcttatgataaccatac-aatattaaatttgaacacaactttgcaaaataaaaatgatgaaccaacctcagtacttaattctctagtcttgtttgc |
14742133 |
T |
|
| Q |
601 |
ataagtggcttctagagcaagctttttactcatttgcttatgagcacgttgcagcggcttcttagatccagtcggagcattctcccagcctttg |
694 |
Q |
| |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
14742134 |
ataagtggcttctagagcaagcttattactcatttgcttatgagcacgttgcagcggcttcttagatccagtcggagcattctccctgcctttg |
14742227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 351 - 642
Target Start/End: Original strand, 14734910 - 14735200
Alignment:
| Q |
351 |
tgaacatgagactacaaaaatgaaaataatgggtgattctttcacgaacctgcactgtgcaatcattgttgttttgagacttctcaaagccgtctcaaca |
450 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||| ||||||||| |||||||||| | |||||||||||||||||||||||||| |||| |
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| T |
14734910 |
tgaacatgagaccacaaaaatgaaaataatgggtgattctttgacgaacctgtactgtgcaatgaccgttgttttgagacttctcaaagccgtatcaatc |
14735009 |
T |
|
| Q |
451 |
ttggacagctgaagcaacaaaaattaaatgcataagttaatcttctgatatatttcttatgataaccatacaaatattaaatttaaacacaactttgcaa |
550 |
Q |
| |
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||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||| ||||| |
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| T |
14735010 |
ttggacaagtagagcaacaaaaattaaatgcataagttaatcttctgatatatttcttatgataaccatac-aatataaaatttaaacacaactctgcaa |
14735108 |
T |
|
| Q |
551 |
aataaaaatgatgaaccaacctcagtacttaattctctagtcttgtttgcataagtggcttctagagcaagctttttactcatttgcttatg |
642 |
Q |
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| T |
14735109 |
aacaaaaatgatgaaccaacctcagtacttaattctctagtcttgtttgcataagtggcttctagagcaagctttttactcaattgcttatg |
14735200 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 383 - 478
Target Start/End: Complemental strand, 14998620 - 14998525
Alignment:
| Q |
383 |
gtgattctttcacgaacctgcactgtgcaatcattgttgttttgagacttctcaaagccgtctcaacattggacagctgaagcaacaaaaattaaa |
478 |
Q |
| |
|
|||||| |||||| |||||||||| |||||| | |||||||||||||| |||||||| | |||| || |||||||| | |||||||| ||||| |
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| T |
14998620 |
gtgattttttcacaaacctgcactttgcaattgcttttgttttgagacttgtcaaagccatatcaatcttagacagctggaacaacaaaagttaaa |
14998525 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 54; Significance: 1e-21; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 398 - 628
Target Start/End: Complemental strand, 29467453 - 29467226
Alignment:
| Q |
398 |
acctgcactgtgcaatcattgttgttttgagacttctcaaagccgtctcaacattggacagctgaagcaacaaaaattaaatgcataagttaatcttctg |
497 |
Q |
| |
|
|||||||||||| |||| ||||||||||||||||||||||||| | ||||| || |||||||| | |||||||| ||||||||| || |||| | |||| |
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| T |
29467453 |
acctgcactgtgaaatcgctgttgttttgagacttctcaaagccatatcaaccttagacagctggaacaacaaaagttaaatgcacaaattaaccgtctg |
29467354 |
T |
|
| Q |
498 |
atatatttcttatgataaccatacaaatatta-aatttaaacacaactttgcaaaataaaaatgatgaaccaacctcagtacttaattctctagtcttgt |
596 |
Q |
| |
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| ||| ||||| | | ||||| | |||| | |||||||||| || || || |||||| |||||||||||||||| |||||||| |||||| | | |
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| T |
29467353 |
aaatacttcttccaagtaacatac-atcattagattttaaacacagctctg---aaaaaaaataatgaaccaacctcagtgcttaattccctagtcatat |
29467258 |
T |
|
| Q |
597 |
ttgcataagtggcttctagagcaagcttttta |
628 |
Q |
| |
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| |||||||| |||||| |||||||| ||||| |
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| T |
29467257 |
tggcataagttgcttcttgagcaagcctttta |
29467226 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 3 - 194
Target Start/End: Complemental strand, 29467998 - 29467802
Alignment:
| Q |
3 |
gaaatttggattattctctttaacaatctctaatgccttgaggaggttatcaggagacaacttggggatggcattcgcaagtctggacttctcggaaagt |
102 |
Q |
| |
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|||||||||||| |||||||||| ||||| |||||||||| || ||||||||||||||| |||| || ||||||||||||| | | ||||| | | || |
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| T |
29467998 |
gaaatttggattgctctctttaactatctccaatgccttgacgatgttatcaggagacaatttggtgaaggcattcgcaagtattaatttctccggatgt |
29467899 |
T |
|
| Q |
103 |
gacaacttcctacaatattctcaacaacagaa-----cataataaacaacatagttccataacatgaccaaaaggaaatgcatcatgaattctcagt |
194 |
Q |
| |
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|||| ||||| | |||| ||||| || ||| |||||||| ||||||| || |||||||| ||||||||||||| || | ||||||||||| |
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| T |
29467898 |
gacagtttcctgaagtattgtcaaccaccgaacaatgcataataagcaacataatttcataacatcaccaaaaggaaatcaataacgaattctcagt |
29467802 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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