View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14411_low_23 (Length: 338)

Name: NF14411_low_23
Description: NF14411
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14411_low_23
NF14411_low_23
[»] scaffold0105 (1 HSPs)
scaffold0105 (70-327)||(18539-18800)
[»] chr4 (2 HSPs)
chr4 (70-327)||(8191964-8192225)
chr4 (99-215)||(54420991-54421107)
[»] chr3 (5 HSPs)
chr3 (113-289)||(4179204-4179380)
chr3 (113-283)||(4172877-4173047)
chr3 (130-289)||(46589810-46589970)
chr3 (99-289)||(30694595-30694784)
chr3 (111-282)||(45731435-45731606)
[»] chr2 (4 HSPs)
chr2 (131-283)||(35917774-35917925)
chr2 (107-243)||(9795526-9795661)
chr2 (177-251)||(18557299-18557374)
chr2 (244-289)||(18557401-18557446)
[»] chr7 (3 HSPs)
chr7 (99-289)||(48260707-48260897)
chr7 (130-283)||(42694677-42694830)
chr7 (121-215)||(37381511-37381605)
[»] scaffold0740 (1 HSPs)
scaffold0740 (121-282)||(2676-2837)
[»] chr8 (4 HSPs)
chr8 (101-289)||(14139396-14139584)
chr8 (131-289)||(40147376-40147533)
chr8 (179-289)||(12619874-12619985)
chr8 (218-289)||(11325527-11325598)
[»] chr6 (2 HSPs)
chr6 (126-282)||(19403290-19403445)
chr6 (99-261)||(15107684-15107846)
[»] scaffold1619 (1 HSPs)
scaffold1619 (107-289)||(610-791)
[»] chr1 (2 HSPs)
chr1 (99-282)||(27024224-27024407)
chr1 (241-289)||(7713806-7713854)
[»] scaffold0057 (1 HSPs)
scaffold0057 (134-289)||(60652-60799)
[»] chr5 (1 HSPs)
chr5 (130-215)||(11140973-11141058)


Alignment Details
Target: scaffold0105 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: scaffold0105
Description:

Target: scaffold0105; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 70 - 327
Target Start/End: Complemental strand, 18800 - 18539
Alignment:
Q  70 aaattagcagccattgcagttaggatcaattttttatgtgtacgcttacttcgtgatacaatattaaagttgcatctttaaaattgttgataatttgact 169  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||| |||    
T  18800 aaattagcagcccttgcagttaggatcaattttttatgtgtacgcttacttcgtgttacgatattaaagttgcatctttaaaattgttgataatttaact 18701  T
Q  170 gatccaaatgataattttatcattagaaactttactttttactgtaattttgtcggcctctttgtttctcctatatt----atattacttgaagttattt 265  Q
    |||||| |||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    |||||||||||||||||||    
T  18700 gatccagatgataatattatcattagaaactttactttttattgtaattttgtcggcctctttgtttctcctatattatatatattacttgaagttattt 18601  T
Q  266 attcttactttttatttgtaaaaactgttttggcaaaataatgactttaatttcatattcat 327  Q
    |||||||||||||||||| ||||||| |||||||||| |||||||||| ||| |||||||||    
T  18600 attcttactttttatttgcaaaaactattttggcaaagtaatgactttgattccatattcat 18539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 70 - 327
Target Start/End: Complemental strand, 8192225 - 8191964
Alignment:
Q  70 aaattagcagccattgcagttaggatcaattttttatgtgtacgcttacttcgtgatacaatattaaagttgcatctttaaaattgttgataatttgact 169  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||| |||    
T  8192225 aaattagcagcccttgcagttaggatcaattttttatgtgtacgcttacttcgtgttacgatattaaagttgcatctttaaaattgttgataatttaact 8192126  T
Q  170 gatccaaatgataattttatcattagaaactttactttttactgtaattttgtcggcctctttgtttctcctatatt----atattacttgaagttattt 265  Q
    |||||| |||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    |||||||||||||||||||    
T  8192125 gatccagatgataatattatcattagaaactttactttttattgtaattttgtcggcctctttgtttctcctatattatatatattacttgaagttattt 8192026  T
Q  266 attcttactttttatttgtaaaaactgttttggcaaaataatgactttaatttcatattcat 327  Q
    |||||||||||||||||| ||||||| |||||||||| |||||||||| ||| |||||||||    
T  8192025 attcttactttttatttgcaaaaactattttggcaaagtaatgactttgattccatattcat 8191964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 99 - 215
Target Start/End: Original strand, 54420991 - 54421107
Alignment:
Q  99 ttttttatgtgtacgcttacttcgtgatacaatattaaagttgcatctttaaaattgttgataatttgactgatccaaatgataattttatcattagaaa 198  Q
    |||||| |||||||| | ||| |||| ||| ||||||||||||||||||||||||||| || |||| ||||||| || ||||||||||| ||||||||||    
T  54420991 ttttttttgtgtacgttaactacgtgttacgatattaaagttgcatctttaaaattgtagacaattcgactgattcagatgataattttttcattagaaa 54421090  T
Q  199 ctttactttttactgta 215  Q
    ||| ||||||| |||||    
T  54421091 cttcactttttcctgta 54421107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 109; Significance: 8e-55; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 113 - 289
Target Start/End: Original strand, 4179204 - 4179380
Alignment:
Q  113 gcttacttcgtgatacaatattaaagttgcatctttaaaattgttgataatttgactgatccaaatgataattttatcattagaaactttactttttact 212  Q
    ||||||| |||  ||| |||||||||||| |||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||| ||||||| ||    
T  4179204 gcttactacgttttacgatattaaagttgtatctttaaaattgtagataatttgactgatccagatgataattttatcattagaaacttcactttttcct 4179303  T
Q  213 gtaattttgtcggcctctttgtttctcctatattatattacttgaagttatttattcttactttttatttgtaaaaa 289  Q
     ||||||||  ||||||||||||||||| |||||||||||||||||||| | |||||| |||||||||||| |||||    
T  4179304 ttaattttgctggcctctttgtttctccaatattatattacttgaagttgtatattctaactttttatttgcaaaaa 4179380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 113 - 283
Target Start/End: Original strand, 4172877 - 4173047
Alignment:
Q  113 gcttacttcgtgatacaatattaaagttgcatctttaaaattgttgataatttgactgatccaaatgataattttatcattagaaactttactttttact 212  Q
    ||||||| |||  ||| |||||||||||| |||||||||||||| ||||||||||||||| || ||||||||||||||||||||||||| ||||||| ||    
T  4172877 gcttactacgttttacgatattaaagttgtatctttaaaattgtagataatttgactgattcagatgataattttatcattagaaacttcactttttcct 4172976  T
Q  213 gtaattttgtcggcctctttgtttctcctatattatattacttgaagttatttattcttactttttatttg 283  Q
     |||||||| ||||||||||||||||| ||||||||||||||||||||| |||||||| |||| |||||||    
T  4172977 ttaattttgccggcctctttgtttctcatatattatattacttgaagttgtttattctgacttgttatttg 4173047  T

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Target: chr3; HSP #3
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 130 - 289
Target Start/End: Complemental strand, 46589970 - 46589810
Alignment:
Q  130 atattaaagttgcatctttaaaattgttgataatttgactgatccaaatgataattttatcattagaaactttac-tttttactgtaattttgtcggcct 228  Q
    ||||||||||||||||||||||||||| |||||||||||||||| | ||||||||||||| ||||||||||| || ||||| |||||| |||||||||||    
T  46589970 atattaaagttgcatctttaaaattgtagataatttgactgatctagatgataattttattattagaaacttcactttttttctgtaaatttgtcggcct 46589871  T
Q  229 ctttgtttctcctatattatattacttgaagttatttattcttactttttatttgtaaaaa 289  Q
    ||||||||||| ||||||||||||||||||  | |||||||| |||||||||||| |||||    
T  46589870 ctttgtttctcttatattatattacttgaaactgtttattctgactttttatttgcaaaaa 46589810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 99 - 289
Target Start/End: Complemental strand, 30694784 - 30694595
Alignment:
Q  99 ttttttatgtgtacgcttacttcgtgatacaatattaaagttgcatctttaaaattgttgataatttgactgatccaaatgataattttatcattagaaa 198  Q
    |||||| |||||||| ||||| |||  ||| ||||||||||||||||||||||||||  |||||||||| ||||| | ||||||||||||||||||||||    
T  30694784 ttttttttgtgtacgtttactacgttttacgatattaaagttgcatctttaaaattggagataatttgattgatctagatgataattttatcattagaaa 30694685  T
Q  199 ctttactttttactgtaattttgtcggcctctttgtttctcctatattatattacttgaagttatttattcttactttttatttgtaaaaa 289  Q
    |||   ||||  |||||||||||||| |||||||||||||| ||||||||| ||||||||||| |||||||| |||||||||||| |||||    
T  30694684 cttcgtttttctctgtaattttgtcgacctctttgtttctcttatattata-tacttgaagttgtttattctgactttttatttgcaaaaa 30694595  T

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Target: chr3; HSP #5
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 111 - 282
Target Start/End: Complemental strand, 45731606 - 45731435
Alignment:
Q  111 acgcttacttcgtgatacaatattaaagttgcatctttaaaattgttgataatttgactgatccaaatgataattttatcattagaaactttacttttta 210  Q
    ||||||||| |||  ||| |||||||||||||||||||||||||||||||||||||||| || ||||||||||||| || ||||||||||| |||| ||     
T  45731606 acgcttactacgtattacgatattaaagttgcatctttaaaattgttgataatttgactaattcaaatgataatttaattattagaaacttcacttgttc 45731507  T
Q  211 ctgtaattttgtcggcctctttgtttctcctatattatattacttgaagttatttattcttactttttattt 282  Q
     ||||||||| |     ||||||||||||||||||||||||| ||||||||||||||||| |||||||||||    
T  45731506 gtgtaatttttttaagttctttgtttctcctatattatattatttgaagttatttattctgactttttattt 45731435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 109; Significance: 8e-55; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 131 - 283
Target Start/End: Complemental strand, 35917925 - 35917774
Alignment:
Q  131 tattaaagttgcatctttaaaattgttgataatttgactgatccaaatgataattttatcattagaaactttactttttactgtaattttgtcggcctct 230  Q
    |||||||||||||| ||||||||| |||||||||| | |||| ||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||    
T  35917925 tattaaagttgcatttttaaaattattgataatttaaatgattcaaatgataattttatcattagaaactttactttttagtgtaa-tttgtcggcctct 35917827  T
Q  231 ttgtttctcctatattatattacttgaagttatttattcttactttttatttg 283  Q
    ||||||||| |||||||||||||||||||||||||||||| | ||||||||||    
T  35917826 ttgtttctcatatattatattacttgaagttatttattctgattttttatttg 35917774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 107 - 243
Target Start/End: Original strand, 9795526 - 9795661
Alignment:
Q  107 gtgtacgcttacttcgtgatacaatattaaagttgcatctttaaaattgttgataatttgactgatccaaatgataattttatcattagaaactttactt 206  Q
    ||||||||||||| ||| |||| ||||||||||||||||||||||||||| |||||||||||| ||| | ||||||||||||||||||||||||| ||||    
T  9795526 gtgtacgcttactacgttatacgatattaaagttgcatctttaaaattgtagataatttgactaatctagatgataattttatcattagaaacttcactt 9795625  T
Q  207 tttactgtaattttgtcggcctctttgtttctcctat 243  Q
    ||| || |||||||| |||||||||||||||||||||    
T  9795626 ttt-ctataattttgccggcctctttgtttctcctat 9795661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 177 - 251
Target Start/End: Original strand, 18557299 - 18557374
Alignment:
Q  177 atgataattttatcattagaaactttac-tttttactgtaattttgtcggcctctttgtttctcctatattatatt 251  Q
    ||||| ||||||| | |||||||||||| |||||| ||||||||| || |||||||||||||||||||||||||||    
T  18557299 atgatgattttattactagaaactttacctttttagtgtaattttttcagcctctttgtttctcctatattatatt 18557374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 289
Target Start/End: Original strand, 18557401 - 18557446
Alignment:
Q  244 attatattacttgaagttatttattcttactttttatttgtaaaaa 289  Q
    |||||||||||||||| |||||||||| | |||||||||| |||||    
T  18557401 attatattacttgaagctatttattctgattttttatttgcaaaaa 18557446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 107; Significance: 1e-53; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 99 - 289
Target Start/End: Original strand, 48260707 - 48260897
Alignment:
Q  99 ttttttatgtgtacgcttacttcgtgatacaatattaaagttgcatctttaaaattgttgataatttgactgatccaaatgataattttatcattagaaa 198  Q
    |||||| | ||||||||||||  ||  ||| |||||||||||| |||||||||||||| |||||||||||||||||  |||||||||||||||||| |||    
T  48260707 ttttttttttgtacgcttactatgttttacgatattaaagttgtatctttaaaattgtagataatttgactgatccggatgataattttatcattaaaaa 48260806  T
Q  199 ctttactttttactgtaattttgtcggcctctttgtttctcctatattatattacttgaagttatttattcttactttttatttgtaaaaa 289  Q
    ||| | ||||| ||||||||||| ||| ||||||||||||||||||||||| ||||||||||| |||||||| |||||||||||| |||||    
T  48260807 cttcattttttcctgtaattttgccggtctctttgtttctcctatattatactacttgaagttgtttattctgactttttatttgcaaaaa 48260897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 130 - 283
Target Start/End: Complemental strand, 42694830 - 42694677
Alignment:
Q  130 atattaaagttgcatctttaaaattgttgataatttgactgatccaaatgataattttatcattagaaactttactttttactgtaattttgtcggcctc 229  Q
    |||||||| ||| |||||||||||| |||||||||| |||||| || || ||||| ||||||||| |||||| |||||||  |||||||||||| ||||     
T  42694830 atattaaaattggatctttaaaattattgataatttaactgattcagattataatcttatcattataaacttcactttttgatgtaattttgtcagccta 42694731  T
Q  230 tttgtttctcctatattatattacttgaagttatttattcttactttttatttg 283  Q
    ||| ||||||||||||||||||||||||| ||||||||| | ||||||||||||    
T  42694730 tttatttctcctatattatattacttgaaattatttattttgactttttatttg 42694677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 121 - 215
Target Start/End: Original strand, 37381511 - 37381605
Alignment:
Q  121 cgtgatacaatattaaagttgcatctttaaaattgttgataatttgactgatccaaatgataattttatcattagaaactttactttttactgta 215  Q
    |||| ||| |||||||||||| |||||||||||||| ||||| |||||||||| | ||||||||||| ||||||||||||| ||||||| |||||    
T  37381511 cgtgttacgatattaaagttgtatctttaaaattgtagataacttgactgatctagatgataattttttcattagaaacttcactttttcctgta 37381605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0740 (Bit Score: 106; Significance: 5e-53; HSPs: 1)
Name: scaffold0740
Description:

Target: scaffold0740; HSP #1
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 121 - 282
Target Start/End: Complemental strand, 2837 - 2676
Alignment:
Q  121 cgtgatacaatattaaagttgcatctttaaaattgttgataatttgactgatccaaatgataattttatcattagaaactttactttttactgtaatttt 220  Q
    |||| ||| ||||||||||||||||||||||||| |||||||||||| |||||||||| ||||||||||||||| |||||| |||||||| |||||||||    
T  2837 cgtgttacgatattaaagttgcatctttaaaatttttgataatttgattgatccaaattataattttatcattacaaacttcactttttaatgtaatttt 2738  T
Q  221 gtcggcctctttgtttctcctatattatattacttgaagttatttattcttactttttattt 282  Q
    |  ||||||||| ||| |||||| |||||||||||||||||||||||||| |||||||||||    
T  2737 gcaggcctctttatttttcctatgttatattacttgaagttatttattctgactttttattt 2676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 105; Significance: 2e-52; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 101 - 289
Target Start/End: Original strand, 14139396 - 14139584
Alignment:
Q  101 ttttatgtgtacgcttacttcgtgatacaatattaaagttgcatctttaaaattgttgataatttgactgatccaaatgataattttatcattagaaact 200  Q
    |||| |||||||||||||||  || ||| ||||||||| |||||||||||||||||||| ||||| |||||| |  |||||||||||||||||| || ||    
T  14139396 ttttttgtgtacgcttacttaatgttacgatattaaagatgcatctttaaaattgttgacaatttaactgattcgtatgataattttatcattaaaagct 14139495  T
Q  201 ttactttttactgtaattttgtcggcctctttgtttctcctatattatattacttgaagttatttattcttactttttatttgtaaaaa 289  Q
    | |||||||| ||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| |  ||||||||||| |||||    
T  14139496 tcactttttagtgtaattttgtcggcctctttgtttctcctatattgtattatttgaagttatttattatgcctttttatttgcaaaaa 14139584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 131 - 289
Target Start/End: Complemental strand, 40147533 - 40147376
Alignment:
Q  131 tattaaagttgcatctttaaaattgttgataatttgactgatccaaatgataattttatcattagaaactttactttttactgtaattttgtcggcctct 230  Q
    |||||||||||||| |||||||||||||||||||| | |||| ||  |||||||||||||||||||||||| | |||||| |||||||||||| ||||||    
T  40147533 tattaaagttgcatttttaaaattgttgataatttaaatgattcaggtgataattttatcattagaaacttcattttttagtgtaattttgtctgcctct 40147434  T
Q  231 ttgtttctcctatattatattacttgaagttatttattcttactttttatttgtaaaaa 289  Q
    ||||||||| |||||||||||| ||||||||||||||||| |||||||||||| |||||    
T  40147433 ttgtttctcatatattatatta-ttgaagttatttattctgactttttatttgcaaaaa 40147376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 179 - 289
Target Start/End: Original strand, 12619874 - 12619985
Alignment:
Q  179 gataattttatcattagaaactttactttttactgtaattttgtcggcctctttgtttctcctatattatattacttgaagtta-tttattcttactttt 277  Q
    ||||||||||||| ||||||||| |||||||| | |||||||||  |||||||||||| | |||||||||||||||| |||||| |||||||| ||||||    
T  12619874 gataattttatcactagaaacttcactttttagtataattttgttcgcctctttgttttttctatattatattactttaagttattttattctgactttt 12619973  T
Q  278 tatttgtaaaaa 289  Q
    |||||| |||||    
T  12619974 tatttgcaaaaa 12619985  T

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Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 218 - 289
Target Start/End: Original strand, 11325527 - 11325598
Alignment:
Q  218 tttgtcggcctctttgtttctcctatattatattacttgaagttatttattcttactttttatttgtaaaaa 289  Q
    ||||| ||||||||||||||| ||| |||||||||||||||||||| |||||| || | ||||||| |||||    
T  11325527 tttgttggcctctttgtttctgctacattatattacttgaagttatctattctgacatgttatttgcaaaaa 11325598  T

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Target: chr6 (Bit Score: 101; Significance: 5e-50; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 126 - 282
Target Start/End: Original strand, 19403290 - 19403445
Alignment:
Q  126 tacaatattaaagttgcatctttaaaattgttgataatttgactgatccaaatgataattttatcattagaaactttactttttactgtaattttgtcgg 225  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||| || ||| ||||||  |||||||||| || ||||||| |||||||||||||||    
T  19403290 tacaatattaaagttgcatctttaaaattgtagataatttgactgattcagatggtaatttattcattagaaatttcactttttcctgtaattttgtcgg 19403389  T
Q  226 cctctttgtttctcctatattatattacttgaagttatttattcttactttttattt 282  Q
    |||||||||||||||||||||||||||| ||||||| ||| |||| |||||||||||    
T  19403390 cctctttgtttctcctatattatattacatgaagtt-tttgttctgactttttattt 19403445  T

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Target: chr6; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 99 - 261
Target Start/End: Complemental strand, 15107846 - 15107684
Alignment:
Q  99 ttttttatgtgtacgcttacttcgtgatacaatattaaagttgcatctttaaaattgttgataatttgactgatccaaatgataattttatcattagaaa 198  Q
    |||||| |||||||| | ||| |||| ||| ||| ||||||||||||||||||||||| |||||||||||||||| | ||||||| ||| ||||||||||    
T  15107846 ttttttttgtgtacgttaactacgtgttacgatagtaaagttgcatctttaaaattgtagataatttgactgatctagatgataactttttcattagaaa 15107747  T
Q  199 ctttactttttactgtaattttgtcggcctctttgtttctcctatattatattacttgaagtt 261  Q
    ||| ||||||| | |||||||||   ||||||||||||||||||||||||||||| |||||||    
T  15107746 cttcactttttccagtaattttgcttgcctctttgtttctcctatattatattacatgaagtt 15107684  T

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Target: scaffold1619 (Bit Score: 95; Significance: 2e-46; HSPs: 1)
Name: scaffold1619
Description:

Target: scaffold1619; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 107 - 289
Target Start/End: Complemental strand, 791 - 610
Alignment:
Q  107 gtgtacgcttacttcgtgatacaatattaaagttgcatctttaaaattgttgataatttgactgatccaaatgataattttatcattagaaactttactt 206  Q
    ||||||||| ||| |||| ||| |||||||||||| || || |||||||| |||||||||||||||| | ||||||||||| ||||||||||||| ||||    
T  791 gtgtacgctaactacgtgttacgatattaaagttgtatattcaaaattgtagataatttgactgatcgagatgataattttttcattagaaacttcactt 692  T
Q  207 tttactgtaattttgtcggcctctttgtttctcctatattatattacttgaagttatttattcttactttttatttgtaaaaa 289  Q
    |||  ||||||||||||||||| |||||||| |||||||||||| || ||||||| ||| ||||||||||||||||| |||||    
T  691 tttcatgtaattttgtcggcctatttgtttcccctatattatatcacatgaagtt-tttgttcttactttttatttgcaaaaa 610  T

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Target: chr1 (Bit Score: 92; Significance: 1e-44; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 99 - 282
Target Start/End: Complemental strand, 27024407 - 27024224
Alignment:
Q  99 ttttttatgtgtacgcttacttcgtgatacaatattaaagttgcatctttaaaattgttgataatttgactgatccaaatgataattttatcattagaaa 198  Q
    |||||| |||||| |||| || |||  ||| ||||||||||| ||||||||||||||| |||||||||||||||||  ||||||||||||||||||||||    
T  27024407 ttttttttgtgtatgcttgctacgttttacgatattaaagtttcatctttaaaattgtagataatttgactgatcctgatgataattttatcattagaaa 27024308  T
Q  199 ctttactttttactgtaattttgtcggcctctttgtttctcctatattatattacttgaagttatttattcttactttttattt 282  Q
    ||| || |||| || |||||| ||||||||||||||||  |||||| || |||| |||||||| |||||||| |||||||||||    
T  27024307 cttcacctttttctataatttggtcggcctctttgttttccctataataaattatttgaagttgtttattctgactttttattt 27024224  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 241 - 289
Target Start/End: Original strand, 7713806 - 7713854
Alignment:
Q  241 tatattatattacttgaagttatttattcttactttttatttgtaaaaa 289  Q
    ||||||||| |||||| ||||||||| ||| |||||||||||| |||||    
T  7713806 tatattatactacttgcagttatttaatctgactttttatttgcaaaaa 7713854  T

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Target: scaffold0057 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 134 - 289
Target Start/End: Original strand, 60652 - 60799
Alignment:
Q  134 taaagttgcatctttaaaattgttgataatttgactgatccaaatgataattttatcattagaaactttactttttactgtaattttgtcggcctctttg 233  Q
    ||||||||||| || |||||||| |||||||||||| |||   ||||||||||| ||||||||||||| |||       | |||||||||||||||||||    
T  60652 taaagttgcatattcaaaattgtagataatttgactaatcgggatgataattttttcattagaaacttcact-------ggaattttgtcggcctctttg 60744  T
Q  234 tttctcctatattatattacttgaagttatttattcttactttttatttgtaaaaa 289  Q
    |||||||||||||||||||| ||||||| ||| ||||||||||||||||| |||||    
T  60745 tttctcctatattatattacatgaagtt-tttgttcttactttttatttgcaaaaa 60799  T

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Target: chr5 (Bit Score: 66; Significance: 4e-29; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 130 - 215
Target Start/End: Original strand, 11140973 - 11141058
Alignment:
Q  130 atattaaagttgcatctttaaaattgttgataatttgactgatccaaatgataattttatcattagaaactttactttttactgta 215  Q
    ||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||| ||||||||||||| ||||||| |||||    
T  11140973 atattaaagttgcatctttaaaattgtagataattttactgatccaaatgataattttttcattagaaacttcactttttcctgta 11141058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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