View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14411_low_25 (Length: 316)
Name: NF14411_low_25
Description: NF14411
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14411_low_25 |
 | |
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Alignment Details
Target: chr2 (Bit Score: 275; Significance: 1e-154; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 3 - 305
Target Start/End: Original strand, 2326246 - 2326548
Alignment:
| Q |
3 |
ctcgttcaaaattcatctctcttctccgatcgtcctaaagcacttcccaatcacaaactcatatctagcaaccagcacaacatcagcgccgctttttatg |
102 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2326246 |
ctcgttcaaaattcatctctcttctccgatcgtcctaaagcacttcccagtcacaaactcatatctagcaaccagcacaacatcagcgccgctttttatg |
2326345 |
T |
|
| Q |
103 |
gcccaacatggcgtaccctctgttgtaacctcgcctccgagatgcttcatccatccaagatcaaatcattctctgaaattcggaagtgggttctacacac |
202 |
Q |
| |
|
||||||||||| |||||||| || ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2326346 |
gcccaacatggtgtaccctccgtcgtaacctcgcctctgagatgcttcatccatccaagatcaaatcattctctgaaattcggaagtgggttctacacac |
2326445 |
T |
|
| Q |
203 |
tctcatcaaccgtctcaaaactgcatcagaatctacagattatgttacagttattccacactttcattatgctatgttctgtttgcttgtttttatgtgt |
302 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
2326446 |
tctcatcaaccgtctcaaaattgcatcagaatctacagattatgttacagttattccacactttcattatgctatgttctgtttacttgtttttatgtgt |
2326545 |
T |
|
| Q |
303 |
ttt |
305 |
Q |
| |
|
||| |
|
|
| T |
2326546 |
ttt |
2326548 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 1 - 305
Target Start/End: Original strand, 2329959 - 2330263
Alignment:
| Q |
1 |
ctctcgttcaaaattcatctctcttctccgatcgtcctaaagcacttcccaatcacaaactcatatctagcaaccagcacaacatcagcgccgcttttta |
100 |
Q |
| |
|
||||||||||||| || || ||||||| |||||||||||||||||||||| | |||||||||| || |||||||||||||| |||||| |||||||||| |
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|
| T |
2329959 |
ctctcgttcaaaactcctccgtcttctctgatcgtcctaaagcacttcccactaacaaactcatgtccagcaaccagcacaatatcagctccgcttttta |
2330058 |
T |
|
| Q |
101 |
tggcccaacatggcgtaccctctgttgtaacctcgcctccgagatgcttcatccatccaagatcaaatcattctctgaaattcggaagtgggttctacac |
200 |
Q |
| |
|
||| |||||||||||||| ||| || ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| || |
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|
| T |
2330059 |
tggaccaacatggcgtactctccgtcgtaacctcgcctccgagatgcttcatccatctaagatcaaatcattctctgaaattcggaagtgggttctgcag |
2330158 |
T |
|
| Q |
201 |
actctcatcaaccgtctcaaaactgcatcagaatctacagattatgttacagttattccacactttcattatgctatgttctgtttgcttgtttttatgt |
300 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||| |||| |||||| || || | ||||||| ||||||| | || ||||| ||||||||||||| |
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|
| T |
2330159 |
actctcatcaaccgtctcaaaactgcatcggaatctgaggattctgttacggtcgtttctcactttcgttatgctgtattttgtttacttgtttttatgt |
2330258 |
T |
|
| Q |
301 |
gtttt |
305 |
Q |
| |
|
||||| |
|
|
| T |
2330259 |
gtttt |
2330263 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 69 - 305
Target Start/End: Original strand, 2320458 - 2320694
Alignment:
| Q |
69 |
agcaaccagcacaacatcagcgccgctttttatggcccaacatggcgtaccctctgttgtaacctcgcctccgagatgcttcatccatccaagatcaaat |
168 |
Q |
| |
|
|||||||| |||||||||||| |||||||||||||||||||||||||||||||| || ||||||| || ||||||||||||||||||||||| | ||||| |
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|
| T |
2320458 |
agcaaccaacacaacatcagctccgctttttatggcccaacatggcgtaccctccgtcgtaaccttgcttccgagatgcttcatccatccaaaaccaaat |
2320557 |
T |
|
| Q |
169 |
cattctctgaaattcggaagtgggttctacacactctcatcaaccgtctcaaaactgcatcagaatctacagattatgttacagttattccacactttca |
268 |
Q |
| |
|
| ||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||| |||| | |||| || || | ||||||| |
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|
| T |
2320558 |
cgttctcagaaattcggaagtgggtcttacacactctcatcaaccgtctcaaaactgcatcggaatctgaggattctattacggtcgtttctcactttcg |
2320657 |
T |
|
| Q |
269 |
ttatgctatgttctgtttgcttgtttttatgtgtttt |
305 |
Q |
| |
|
||||||| | || ||||| |||||||||||||||||| |
|
|
| T |
2320658 |
ttatgctgtattttgtttacttgtttttatgtgtttt |
2320694 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 69 - 305
Target Start/End: Original strand, 2302757 - 2302993
Alignment:
| Q |
69 |
agcaaccagcacaacatcagcgccgctttttatggcccaacatggcgtaccctctgttgtaacctcgcctccgagatgcttcatccatccaagatcaaat |
168 |
Q |
| |
|
|||||||| |||||||||||| ||| |||||||||||||||||||||||||||| || ||||||| || |||||||| |||||||| ||||| | ||||| |
|
|
| T |
2302757 |
agcaaccaacacaacatcagctccggtttttatggcccaacatggcgtaccctccgtcgtaaccttgcttccgagatacttcatccttccaaaaccaaat |
2302856 |
T |
|
| Q |
169 |
cattctctgaaattcggaagtgggttctacacactctcatcaaccgtctcaaaactgcatcagaatctacagattatgttacagttattccacactttca |
268 |
Q |
| |
|
| ||||| ||||||||||||||||| |||||||||||||||||||||||||||| ||||| |||||| |||||| ||| || ||| || | | ||||| |
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|
| T |
2302857 |
cgttctcagaaattcggaagtgggtgttacacactctcatcaaccgtctcaaaaccgcatcggaatctgcagattctgtcacggttgtttctccctttcg |
2302956 |
T |
|
| Q |
269 |
ttatgctatgttctgtttgcttgtttttatgtgtttt |
305 |
Q |
| |
|
|||||||||||| | || |||||||||||||||||| |
|
|
| T |
2302957 |
ttatgctatgtttagcttacttgtttttatgtgtttt |
2302993 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 1 - 305
Target Start/End: Original strand, 2350259 - 2350569
Alignment:
| Q |
1 |
ctctcgttcaaaattcatctctcttctccgatcgtcctaaagcacttcccaatcacaaactcatatctagcaaccagcacaacatcagcgccgcttttta |
100 |
Q |
| |
|
||||||||||||| ||| | ||||||| ||||| |||| ||| ||||||| |||| |||| || |||||||| |||||||||||| |||||||||| |
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|
| T |
2350259 |
ctctcgttcaaaactcagccatcttctctgatcgccctagagctcttcccaccgccaaaatcatctccagcaaccaacacaacatcagctccgcttttta |
2350358 |
T |
|
| Q |
101 |
tggcccaacatggcgtaccctctgttgtaacctcgcctccgagatgcttcatccatccaagatcaaatcattctctgaaattcggaagtgggttctacac |
200 |
Q |
| |
|
||| ||||||||||| ||||| || | ||||| || || ||||||||||||||||| ||||||||||| ||||| ||||| || |||||||| |||||| |
|
|
| T |
2350359 |
tggtgcaacatggcgtgccctccgtcgaaaccttgcttctgagatgcttcatccatctaagatcaaatctttctcagaaatccgtaagtgggtcctacac |
2350458 |
T |
|
| Q |
201 |
actctcatcaaccgtctcaaaactgcatcagaat------ctacagattatgttacagttattccacactttcattatgctatgttctgtttgcttgttt |
294 |
Q |
| |
|
||||||||||||||||||||||||||||| |||| | | |||||| ||| |||||| |||||||| | ||||||||||||||||| ||||||| |
|
|
| T |
2350459 |
actctcatcaaccgtctcaaaactgcatccgaattggaaacagctgattatattaaagttatgccacacttcaactatgctatgttctgtttacttgttt |
2350558 |
T |
|
| Q |
295 |
ttatgtgtttt |
305 |
Q |
| |
|
| ||||||||| |
|
|
| T |
2350559 |
tcatgtgtttt |
2350569 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 69 - 305
Target Start/End: Original strand, 2309469 - 2309711
Alignment:
| Q |
69 |
agcaaccagcacaacatcagcgccgctttttatggcccaacatggcgtaccctctgttgtaacctcgcctccgagatgcttcatccatccaagatcaaat |
168 |
Q |
| |
|
|||||||| |||||||||| | |||||||||||||||||||||||||||||||| || ||||||| || | ||||||||||||||||||||| |||||| |
|
|
| T |
2309469 |
agcaaccaacacaacatcaacaccgctttttatggcccaacatggcgtaccctccgtcgtaaccttgctttcgagatgcttcatccatccaaactcaaat |
2309568 |
T |
|
| Q |
169 |
cattctctgaaattcggaagtgggttctacacactctcatcaaccgtctcaaaactgcatcagaat------ctacagattatgttacagttattccaca |
262 |
Q |
| |
|
| ||||| ||||||| ||||||||| ||| ||||||||||||||||||||||||||||||||||| | || |||| | ||| ||||| ||||| |
|
|
| T |
2309569 |
cgttctcagaaattcagaagtgggtcttacgcactctcatcaaccgtctcaaaactgcatcagaatcggaaccaacggattctattaaggttatgccaca |
2309668 |
T |
|
| Q |
263 |
ctttcattatgctatgttctgtttgcttgtttttatgtgtttt |
305 |
Q |
| |
|
||| | ||||||||||||| ||| |||||||||||||||||| |
|
|
| T |
2309669 |
cttcaaatatgctatgttctctttacttgtttttatgtgtttt |
2309711 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 2 - 305
Target Start/End: Original strand, 2293071 - 2293380
Alignment:
| Q |
2 |
tctcgttcaaaattcatctctcttctccgatcgtcctaaagcacttcccaatcacaaactcatatctagcaaccagcacaacatcagcgccgctttttat |
101 |
Q |
| |
|
|||||||||||| ||||| ||||||| ||||| |||| ||| ||||| | | |||| | | || |||||||| |||||||||| | |||||| |||| |
|
|
| T |
2293071 |
tctcgttcaaaactcatccatcttctctgatcgccctacagctcttcctacttccaaaatgttgtccagcaaccaacacaacatcaacaccgcttattat |
2293170 |
T |
|
| Q |
102 |
ggcccaacatggcgtaccctctgttgtaacctcgcctccgagatgcttcatccatccaagatcaaatcattctctgaaattcggaagtgggttctacaca |
201 |
Q |
| |
|
|||||||||||||||||||| || ||||||| || ||||||||||||||||||||||| ||||||| ||||| ||||||||||||||||| ||| || |
|
|
| T |
2293171 |
ggcccaacatggcgtacccttcgtcgtaaccttgcttccgagatgcttcatccatccaaactcaaatcgttctcagaaattcggaagtgggtcttacgca |
2293270 |
T |
|
| Q |
202 |
ctctcatcaaccgtctcaaaactgcatcagaatc------tacagattatgttacagttattccacactttcattatgctatgttctgtttgcttgtttt |
295 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||| || |||| | ||| ||||| |||||||| | ||||||||||||| ||| |||||||| |
|
|
| T |
2293271 |
ctctcatcaatcgtctcaaaactgcatcagaatcggaactaacggattctattaaggttatgccacacttcaaatatgctatgttctctttacttgtttt |
2293370 |
T |
|
| Q |
296 |
tatgtgtttt |
305 |
Q |
| |
|
|||||||||| |
|
|
| T |
2293371 |
tatgtgtttt |
2293380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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