View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14411_low_27 (Length: 294)
Name: NF14411_low_27
Description: NF14411
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14411_low_27 |
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Alignment Details
Target: chr7 (Bit Score: 240; Significance: 1e-133; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 18 - 281
Target Start/End: Complemental strand, 32429192 - 32428929
Alignment:
| Q |
18 |
ataattgtattcaaatcagtgcttgaagatggcagatttgcaaaagacattattcacaatagtcttgatcggagttgccttttcaacattgttcattagc |
117 |
Q |
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| T |
32429192 |
ataattgtattcaaatcagtgcttgaagatggcagatttgcaaaagacattattcacaatagtcttgatcggagttgccttttcaacattgttcattagc |
32429093 |
T |
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| Q |
118 |
aatgtcaaagcaattgtccgctttccagacaatgttgtaaaaaatgatttgaaaggtgtttatccaaatcacaacagcttcttacaatttgagaatgttt |
217 |
Q |
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| T |
32429092 |
aatgtcaaagcaattgtccgctttccagataatgttgtaaaaaatgatttgaaaggtgtttatccaaatcacaacggcttcttgcaatttgagaatgttt |
32428993 |
T |
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| Q |
218 |
atcgtactacaagactaagtccaggagtccccaatccacaccaccatagatccttacaatctga |
281 |
Q |
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| T |
32428992 |
atcgtactacaagactaagtccaggagtccccgatccataccaccttagatccttacaatctga |
32428929 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 198 - 263
Target Start/End: Complemental strand, 32428940 - 32428875
Alignment:
| Q |
198 |
cttacaatttgagaatgtttatcgtactacaagactaagtccaggagtccccaatccacaccacca |
263 |
Q |
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| T |
32428940 |
cttacaatctgagaatgttcatcgtattgcaagactgagtccaggaggccccgatccacaccacca |
32428875 |
T |
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