View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14411_low_28 (Length: 290)
Name: NF14411_low_28
Description: NF14411
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14411_low_28 |
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Alignment Details
Target: chr5 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 17 - 283
Target Start/End: Complemental strand, 40804444 - 40804178
Alignment:
| Q |
17 |
atcaagcttctttggtacctagtggatgaagaaacaaagatattaaagggtcgtcattgtcaagaaattgatatgtattgttccctttattaggcttgaa |
116 |
Q |
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| T |
40804444 |
atcaagcttctttggtacctagtggatgaagaaacaaagatattaaagggtcgtcattgtcaagaaattgatatgtattgttccctttattaggcttgaa |
40804345 |
T |
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| Q |
117 |
acaccaatgatttatgaccagtcacttatctttcctcttaaaaacttgagttgagtcaataattgattaagcattaatgactgagtttaaatatgttctt |
216 |
Q |
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| T |
40804344 |
acaccaatgatttatgaccagtcgcttatctttcctcttaaaaacttgagttgagtcaataattgattaagcattaatgactgagtttaaatatgttctt |
40804245 |
T |
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| Q |
217 |
tgactgtgttgagattcaaatatattaccaattatgtttctcttttgttttaatcccttgatgatgt |
283 |
Q |
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| T |
40804244 |
tgactgtgttgagattcaaatatattaccaattatgtttctcttttgttttagtcccttgatgatgt |
40804178 |
T |
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Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 70 - 124
Target Start/End: Complemental strand, 5115901 - 5115847
Alignment:
| Q |
70 |
tcattgtcaagaaattgatatgtattgttccctttattaggcttgaaacaccaat |
124 |
Q |
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| T |
5115901 |
tcattgtcaagaaaatgatatgtcttgttcctgttattgggcttgaaacaccaat |
5115847 |
T |
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