View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14411_low_29 (Length: 289)
Name: NF14411_low_29
Description: NF14411
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14411_low_29 |
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Alignment Details
Target: chr7 (Bit Score: 235; Significance: 1e-130; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 274
Target Start/End: Original strand, 29733864 - 29734146
Alignment:
| Q |
1 |
cctccagtctccggtggcaggaatataagtgacattttcatactgaaatgttgtt---------gttgtagtagtcctttcgaacccgtcatcggaatcc |
91 |
Q |
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| T |
29733864 |
cctccagtctacggtggcaggaatatcagtgacattttcatacttaaatgttgttgttggtgttgttgtagtagtcctttcgaacccgtcatcggaatcc |
29733963 |
T |
|
| Q |
92 |
tcgatgggtttatccacaaatctattaatggcaagtttgtagggtttgttccctgcagcattgaaggaatcaatgtaggccacattgtgtttgaatattt |
191 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
29733964 |
tcgatgggtttatccacaaatctattaatggcaagtttgtagggtttgttccctgcagcattgaagtaatcaatgtaggccacattgtgtttgaatattt |
29734063 |
T |
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| Q |
192 |
gaaagtgttttttctgttctgcaacatccttgtagacaactccatattttgtcttccagtactcgaatctttcggataatgat |
274 |
Q |
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| T |
29734064 |
gaaagtgttttttctgttctgcaacatccttgtagacaactccatattttgtcttccagtactcgaatctttcggataatgat |
29734146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 85 - 269
Target Start/End: Complemental strand, 29746263 - 29746080
Alignment:
| Q |
85 |
ggaatcctcgatgggtttatccacaaatctattaatggcaagtttgtagggtttgttccctgcagcattgaaggaatcaatgtaggccacattgtgtttg |
184 |
Q |
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| T |
29746263 |
ggaatcctcaatgggttggtccgcaaatccattaatggcaagtttat-gggtttgttccctgcagcattgaaggattcaatgtagatcacattgtgtttg |
29746165 |
T |
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| Q |
185 |
aatatttgaaagtgttttttctgttctgcaacatccttgtagacaactccatattttgtcttccagtactcgaatctttcggata |
269 |
Q |
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| T |
29746164 |
aatatttcgaagtgttttttcttttctgcaacatccttgtagacaactccatattttgtcttccagtgttcgaatctttcagata |
29746080 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 85 - 269
Target Start/End: Original strand, 29606905 - 29607087
Alignment:
| Q |
85 |
ggaatcctcgatgggtttatccacaaatctattaatggcaagtttgtagggtttgttccctgcagcattgaaggaatcaatgtaggccacattgtgtttg |
184 |
Q |
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| T |
29606905 |
ggaatccttaatgggttggtccgcaaatccattaatggcaagtttat-gggtttgttgcctgcagcatttagggattcaatgtagatcacattgtgtttg |
29607003 |
T |
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| Q |
185 |
aatatttgaaagtgttttttctgttctgcaacatccttgtagacaactccatattttgtcttccagtactcgaatctttcggata |
269 |
Q |
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| T |
29607004 |
aatatttggaagtgtttttttt-ttctgcaacatccttgtagacaactccatattttgtcttccagtgttcgaatctttcggata |
29607087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 73 - 251
Target Start/End: Original strand, 30057025 - 30057203
Alignment:
| Q |
73 |
gaacccgtcatcggaatcctcgatgggtttatccacaaatctattaatggcaagtttgtagggtttgttccctgcagcattgaaggaatcaatgtaggcc |
172 |
Q |
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| T |
30057025 |
gaacccatcatcggaaggctcggtgggtagatccgcaaatctattaatggtaagtttgtaggatttgttccctgcagcattaaaggaatcaatgtaggca |
30057124 |
T |
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| Q |
173 |
acattgtgtttgaatatttgaaagtgttttttctgttctgcaacatccttgtagacaactccatattttgtcttccagt |
251 |
Q |
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| T |
30057125 |
acattgtgtttgaatatttggatgtgcttttcctcctctgcatcatccttgtagatcactctatactttatcttccagt |
30057203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 117 - 275
Target Start/End: Original strand, 34759144 - 34759301
Alignment:
| Q |
117 |
taatggcaagtttgtagggtttgttccctgcagcattgaaggaatcaatgtaggccacattgtgtttgaatatttgaaagtgttttttctgttctgcaac |
216 |
Q |
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| T |
34759144 |
taatgccaagtttgtatagttttttccctgcaatattga-ggattcaatggaggccacattgtgtttgaatatttggaagtgtttttcgtgctctacatc |
34759242 |
T |
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| Q |
217 |
atccttgtagacaactccatattttgtcttccagtactcgaatctttcggataatgatg |
275 |
Q |
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||||||| |||| |||||||| |||| ||||| || | ||||||| | |||||||| |
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| T |
34759243 |
atccttgcagacctttccatattatgtcatccagagcttgtatctttctgctaatgatg |
34759301 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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