View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14411_low_31 (Length: 277)
Name: NF14411_low_31
Description: NF14411
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14411_low_31 |
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| [»] scaffold0301 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 139; Significance: 9e-73; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 139; E-Value: 9e-73
Query Start/End: Original strand, 32 - 197
Target Start/End: Complemental strand, 38738951 - 38738792
Alignment:
| Q |
32 |
atgctacatcaatataaaattatattagaggtgtagttaaacttaaaaggcatgtcttcaattgagattaaatttgacaaaaacacacgtaacaattcaa |
131 |
Q |
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| T |
38738951 |
atgctacatcaatataaaattatattagaggtgtagttaaa------aggcatgtcttcaattgagattaaatttgacaaaaacacacgtaacaattcaa |
38738858 |
T |
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| Q |
132 |
aggttttacatccattcgtgtgttttgtgcgaatatcctttcgcaccatttagcatttttcattgg |
197 |
Q |
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| T |
38738857 |
aggttttacatccattcgtgtgttttgtgcgaatatcctttcgcaccatttagcatttttgattgg |
38738792 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 32 - 191
Target Start/End: Complemental strand, 38151491 - 38151338
Alignment:
| Q |
32 |
atgctacatcaatataaaattatattagaggtgtagttaaacttaaaaggcatgtcttcaattgagattaaatttgacaaaaacacacgtaacaattcaa |
131 |
Q |
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| T |
38151491 |
atgctacatcaatataaaattatattagaggtgtagttaaa------aggcatgtcttcaattgagattaaatttgacaaaaacacacgtagcaattcaa |
38151398 |
T |
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| Q |
132 |
aggttttacatccattcgtgtgttttgtgcgaatatcctttcgcaccatttagcattttt |
191 |
Q |
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| T |
38151397 |
aggttttacatccattcgtgtgttttgtgcgaatatcctttcgcaccatttagcattttt |
38151338 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 201 - 248
Target Start/End: Complemental strand, 38738739 - 38738692
Alignment:
| Q |
201 |
acctaaaatactcaaccattggcatcaatatgaaccactttaatatag |
248 |
Q |
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| T |
38738739 |
acctaaaatactcaaccattggcatcaatatgaaccactttaatatag |
38738692 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0301 (Bit Score: 110; Significance: 2e-55; HSPs: 1)
Name: scaffold0301
Description:
Target: scaffold0301; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 32 - 191
Target Start/End: Complemental strand, 8423 - 8272
Alignment:
| Q |
32 |
atgctacatcaatataaaattatattagaggtgtagttaaacttaaaaggcatgtcttcaattgagattaaatttgacaaaaacacacgtaacaattcaa |
131 |
Q |
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| T |
8423 |
atgctacatcaatataaaattatattagaggtgtagttaaa------aggcatgttttcaattgagattaaatttgacaaaaacac--gtagcaattcaa |
8332 |
T |
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| Q |
132 |
aggttttacatccattcgtgtgttttgtgcgaatatcctttcgcaccatttagcattttt |
191 |
Q |
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| T |
8331 |
aggttttacatccattcgtgtgttttgtgcgaaaatcctttcgcaccgtttagcattttt |
8272 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 102; Significance: 1e-50; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 32 - 191
Target Start/End: Complemental strand, 29059273 - 29059122
Alignment:
| Q |
32 |
atgctacatcaatataaaattatattagaggtgtagttaaacttaaaaggcatgtcttcaattgagattaaatttgacaaaaacacacgtaacaattcaa |
131 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||| ||| |||||||| |
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| T |
29059273 |
atgctacatcaatataaaattatattagaggtgtagttaaa------aggcatgttttcaattgagattaaatttgacaaaaacac--gtagcaattcaa |
29059182 |
T |
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| Q |
132 |
aggttttacatccattcgtgtgttttgtgcgaatatcctttcgcaccatttagcattttt |
191 |
Q |
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| T |
29059181 |
aggttttacatccattcgtgtgttttgtaagaaaatcctttcgcaccgtttagcattttt |
29059122 |
T |
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