View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14411_low_34 (Length: 269)

Name: NF14411_low_34
Description: NF14411
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14411_low_34
NF14411_low_34
[»] chr4 (19 HSPs)
chr4 (7-250)||(29123429-29123673)
chr4 (7-250)||(22340567-22340810)
chr4 (7-242)||(4303193-4303428)
chr4 (17-238)||(18116383-18116604)
chr4 (7-185)||(17826772-17826950)
chr4 (17-242)||(8110914-8111139)
chr4 (17-238)||(23158151-23158372)
chr4 (17-238)||(36279204-36279425)
chr4 (17-238)||(51872685-51872906)
chr4 (90-242)||(15705634-15705786)
chr4 (5-244)||(12915785-12916024)
chr4 (18-242)||(3621498-3621722)
chr4 (18-238)||(15649069-15649289)
chr4 (34-115)||(50693772-50693853)
chr4 (34-115)||(36951324-36951405)
chr4 (34-115)||(17469142-17469223)
chr4 (50-121)||(24059760-24059831)
chr4 (180-242)||(17838698-17838760)
chr4 (179-238)||(6614197-6614256)
[»] chr1 (9 HSPs)
chr1 (18-242)||(49369763-49369987)
chr1 (17-238)||(41342809-41343030)
chr1 (17-214)||(27029976-27030173)
chr1 (17-238)||(10003931-10004152)
chr1 (50-139)||(24545091-24545180)
chr1 (17-118)||(28520838-28520939)
chr1 (56-115)||(37668976-37669035)
chr1 (51-118)||(26996083-26996150)
chr1 (175-242)||(5557263-5557330)
[»] chr3 (14 HSPs)
chr3 (18-250)||(23603251-23603482)
chr3 (7-242)||(8595253-8595488)
chr3 (7-238)||(42462720-42462951)
chr3 (17-238)||(23571622-23571843)
chr3 (7-242)||(48547550-48547785)
chr3 (17-238)||(3514684-3514905)
chr3 (18-238)||(17153809-17154029)
chr3 (17-238)||(9819060-9819281)
chr3 (63-238)||(53152132-53152307)
chr3 (7-182)||(42459294-42459469)
chr3 (34-115)||(16664099-16664180)
chr3 (34-115)||(52196409-52196490)
chr3 (42-115)||(39632858-39632931)
chr3 (51-115)||(10754186-10754250)
[»] scaffold0032 (1 HSPs)
scaffold0032 (7-242)||(58387-58622)
[»] scaffold0041 (1 HSPs)
scaffold0041 (17-238)||(74298-74519)
[»] chr7 (18 HSPs)
chr7 (17-238)||(40891765-40891986)
chr7 (17-238)||(586784-587005)
chr7 (18-238)||(37075592-37075812)
chr7 (17-238)||(12121586-12121807)
chr7 (17-238)||(24819697-24819918)
chr7 (30-238)||(36575396-36575604)
chr7 (18-238)||(9403134-9403347)
chr7 (18-238)||(34981847-34982067)
chr7 (18-218)||(20705494-20705694)
chr7 (18-218)||(20873538-20873738)
chr7 (34-115)||(22865766-22865847)
chr7 (34-115)||(47548969-47549050)
chr7 (34-115)||(47553412-47553493)
chr7 (34-118)||(27987585-27987669)
chr7 (39-118)||(27869020-27869099)
chr7 (34-139)||(18815411-18815516)
chr7 (45-118)||(8457213-8457286)
chr7 (37-118)||(5196753-5196834)
[»] chr5 (10 HSPs)
chr5 (7-250)||(11266013-11266256)
chr5 (17-242)||(27891694-27891919)
chr5 (19-227)||(5824972-5825180)
chr5 (18-238)||(6678580-6678798)
chr5 (38-242)||(29150301-29150504)
chr5 (34-115)||(29322916-29322997)
chr5 (17-118)||(31962673-31962774)
chr5 (34-115)||(38931892-38931973)
chr5 (37-115)||(8896369-8896447)
chr5 (123-238)||(10462244-10462359)
[»] chr2 (9 HSPs)
chr2 (7-242)||(38938468-38938701)
chr2 (17-235)||(30275892-30276110)
chr2 (18-238)||(32349874-32350094)
chr2 (18-227)||(23384854-23385063)
chr2 (19-227)||(21963419-21963627)
chr2 (19-192)||(21964639-21964812)
chr2 (68-238)||(27914653-27914823)
chr2 (34-115)||(1258584-1258665)
chr2 (35-143)||(22300858-22300966)
[»] chr6 (8 HSPs)
chr6 (7-228)||(667285-667496)
chr6 (17-238)||(18295397-18295618)
chr6 (18-242)||(28604889-28605113)
chr6 (17-214)||(2894261-2894458)
chr6 (34-218)||(7218368-7218552)
chr6 (18-143)||(17228031-17228156)
chr6 (34-115)||(5391535-5391616)
chr6 (91-214)||(9759578-9759701)
[»] chr8 (6 HSPs)
chr8 (17-238)||(26077727-26077948)
chr8 (17-206)||(31423242-31423431)
chr8 (34-214)||(29532381-29532561)
chr8 (34-228)||(26390260-26390454)
chr8 (34-115)||(10801698-10801779)
chr8 (174-238)||(2959748-2959812)
[»] scaffold0003 (1 HSPs)
scaffold0003 (34-244)||(224744-224954)
[»] scaffold0289 (1 HSPs)
scaffold0289 (34-139)||(11164-11269)


Alignment Details
Target: chr4 (Bit Score: 217; Significance: 1e-119; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 7 - 250
Target Start/End: Original strand, 29123429 - 29123673
Alignment:
Q  7 tggacatcatcatcactgcagagtttgatcaatttttatggcttaaagcggtt-cccttaaaagttaacatttttgtttggcgtctctttctgaatagac 105  Q
    |||||||||  |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  29123429 tggacatcaatatcactgcagagtttgatcaatttttatggcttaaagcggtttcccttaaaagttaacatttttgtttggcgtctctttctgaatagac 29123528  T
Q  106 ttgctacaaaggacaaccttcgcaagaggaatgtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggaggaaagatatcatttgtt 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||    
T  29123529 ttgctacaaaggacaaccttcgcaagaggaatgtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggaggaaagagaccatttgtt 29123628  T
Q  206 ttttcaatgtgatttttatggtcaattatggctcttggtttcgaa 250  Q
    ||||||||||||||||||||||| |||||||||||||||||||||    
T  29123629 ttttcaatgtgatttttatggtcgattatggctcttggtttcgaa 29123673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 7 - 250
Target Start/End: Complemental strand, 22340810 - 22340567
Alignment:
Q  7 tggacatcatcatcactgcagagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagact 106  Q
    |||||||||  |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  22340810 tggacatcaatatcactgcagtgtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctaaatagact 22340711  T
Q  107 tgctacaaaggacaaccttcgcaagaggaatgtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggaggaaagatatcatttgttt 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||    
T  22340710 tgctacaaaggacaaccttcgcaagaggaatgtccttcaggctacagatacttcttgtgtggccttgtgtggtaaggaggaggaaagagatcatttgttt 22340611  T
Q  207 tttcaatgtgatttttatggtcaattatggctcttggtttcgaa 250  Q
    ||||||||||||| |||||||| |||||||||||||||||||||    
T  22340610 tttcaatgtgattattatggtcgattatggctcttggtttcgaa 22340567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 7 - 242
Target Start/End: Original strand, 4303193 - 4303428
Alignment:
Q  7 tggacatcatcatcactgcagagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagact 106  Q
    |||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||    
T  4303193 tggacatcaatatcactgcagagtttgatcaatttttatggcttaaagcggttcccttaaaagttaatatttttgtttggcgtctttttctgaatagact 4303292  T
Q  107 tgctacaaaggacaaccttcgcaagaggaatgtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggaggaaagatatcatttgttt 206  Q
    ||||||||||||||| ||||||||||||||| ||||||| ||||||||| |||||||||||||||||||||||||||||||||||||  | |||||||||    
T  4303293 tgctacaaaggacaatcttcgcaagaggaatatccttcatgctacagattcttcttgtgcggccttgtgtggtaaggaggaggaaagggaccatttgttt 4303392  T
Q  207 tttcaatgtgatttttatggtcaattatggctcttg 242  Q
    ||||||||||||| |||||||| |||||| ||||||    
T  4303393 tttcaatgtgattattatggtcgattatgactcttg 4303428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 154; E-Value: 9e-82
Query Start/End: Original strand, 17 - 238
Target Start/End: Original strand, 18116383 - 18116604
Alignment:
Q  17 catcactgcagagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaag 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  18116383 catcactgcagagtttgatcaatttttatggcttaaagcggttcctttaaaagttaacatttttgtttggcgtctctttctgaatagatttgctacaaag 18116482  T
Q  117 gacaaccttcgcaagaggaatgtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggaggaaagatatcatttgttttttcaatgtg 216  Q
    ||||| ||||||||||||||||||||| |||||||  ||  ||||||||  ||||| ||||||||||||||||||||  ||||||||||||| |||||||    
T  18116483 gacaatcttcgcaagaggaatgtccttgaggctaccaatgtttcttgtggagccttatgtggtaaggaggaggaaagggatcatttgtttttccaatgtg 18116582  T
Q  217 atttttatggtcaattatggct 238  Q
    ||| ||||||||  ||||||||    
T  18116583 attattatggtcggttatggct 18116604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 7 - 185
Target Start/End: Original strand, 17826772 - 17826950
Alignment:
Q  7 tggacatcatcatcactgcagagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagact 106  Q
    |||||||||  ||||||| ||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  17826772 tggacatcaatatcactgtagagtttgatcaatttttatggcttaaagtggtttccttaaaagttaacatttttgtttggcgtctctttctgaatagact 17826871  T
Q  107 tgctacaaaggacaaccttcgcaagaggaatgtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggag 185  Q
    |||||||||||| || ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  17826872 tgctacaaaggagaatcttcgcaagaggaatgtccttcaggctacagatgcttcttgtgcggccttgtgtggtaaggag 17826950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 17 - 242
Target Start/End: Complemental strand, 8111139 - 8110914
Alignment:
Q  17 catcactgcagagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaag 116  Q
    |||||||||||||||| |||||||||||||||||||||||||||| ||||| ||||| |||||||| |||||||||||||||||||||||||| ||||||    
T  8111139 catcactgcagagtttaatcaatttttatggcttaaagcggttccattaaaggttaatatttttgtatggcgtctctttctgaatagacttgcaacaaag 8111040  T
Q  117 gacaaccttcgcaagaggaatgtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggaggaaagatatcatttgttttttcaatgtg 216  Q
    |||||||| ||||||||||| ||| || ||| | |  ||   ||||| |||||||||||||||||||||||||||||  | ||||| |||||||||||||    
T  8111039 gacaacctgcgcaagaggaacgtctttgaggtttccaatgtgtcttgcgcggccttgtgtggtaaggaggaggaaagggaccatttcttttttcaatgtg 8110940  T
Q  217 atttttatggtcaattatggctcttg 242  Q
    ||  |||||||| |||||||||||||    
T  8110939 atcattatggtcgattatggctcttg 8110914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 17 - 238
Target Start/End: Original strand, 23158151 - 23158372
Alignment:
Q  17 catcactgcagagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaag 116  Q
    |||||||||| | |||||||||||||||||||||||||| || |||||||||||||| |||||||||||||| |||||||||||||||||||||||||||    
T  23158151 catcactgcatattttgatcaatttttatggcttaaagcagtccccttaaaagttaatatttttgtttggcggctctttctgaatagacttgctacaaag 23158250  T
Q  117 gacaaccttcgcaagaggaatgtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggaggaaagatatcatttgttttttcaatgtg 216  Q
    || || ||||||||||||||||| ||| |||||||  ||  ||||||||  || || ||||||||||||||||||||  ||||||||||||| |||| ||    
T  23158251 gataatcttcgcaagaggaatgttcttgaggctaccaatgtttcttgtggtgctttatgtggtaaggaggaggaaagggatcatttgtttttccaatatg 23158350  T
Q  217 atttttatggtcaattatggct 238  Q
    ||| |||||||| |||||||||    
T  23158351 attattatggtcgattatggct 23158372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 17 - 238
Target Start/End: Original strand, 36279204 - 36279425
Alignment:
Q  17 catcactgcagagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaag 116  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||  ||||||||||||||||||||||||||    
T  36279204 catcactgcagattttgatcaatttttatggcttaaagcggttcccttaaaagttaatatttttgtttggcggttctttctgaatagacttgctacaaag 36279303  T
Q  117 gacaaccttcgcaagaggaatgtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggaggaaagatatcatttgttttttcaatgtg 216  Q
    || || ||||| ||||||||||| ||| |||||||  ||  ||||||||  || || ||||||||||||||| ||||  ||||||||||||| |||||||    
T  36279304 gataatcttcgtaagaggaatgttcttgaggctaccaatgtttcttgtggtgctttatgtggtaaggaggagaaaagggatcatttgtttttccaatgtg 36279403  T
Q  217 atttttatggtcaattatggct 238  Q
     || |||||||| |||||||||    
T  36279404 cttattatggtcgattatggct 36279425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 17 - 238
Target Start/End: Complemental strand, 51872906 - 51872685
Alignment:
Q  17 catcactgcagagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaag 116  Q
    |||||||||||| |||| |||||||||||||||||||||||| |||||||||||||| |||||||||||||| |||||||||||||||||||||||||||    
T  51872906 catcactgcagattttgttcaatttttatggcttaaagcggtacccttaaaagttaatatttttgtttggcggctctttctgaatagacttgctacaaag 51872807  T
Q  117 gacaaccttcgcaagaggaatgtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggaggaaagatatcatttgttttttcaatgtg 216  Q
    || || ||||||||||||||||| ||| |||||||  ||  ||| | ||  || || | ||||||||||||||||||  ||||||||||||| ||||| |    
T  51872806 gataatcttcgcaagaggaatgttcttgaggctaccaatgtttcctatggtgctttatttggtaaggaggaggaaagggatcatttgtttttccaatgcg 51872707  T
Q  217 atttttatggtcaattatggct 238  Q
    ||| |||||||| |||||||||    
T  51872706 attattatggtcgattatggct 51872685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 90 - 242
Target Start/End: Original strand, 15705634 - 15705786
Alignment:
Q  90 ctctttctgaatagacttgctacaaaggacaaccttcgcaagaggaatgtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggagg 189  Q
    |||| ||||||| ||||||||||||| ||||| ||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| |||||||||||    
T  15705634 ctctctctgaatggacttgctacaaatgacaatcttcgcaagaggaatatccttcaggctacagatgcttcttgtgcggccttgtgtgataaggaggagg 15705733  T
Q  190 aaagatatcatttgttttttcaatgtgatttttatggtcaattatggctcttg 242  Q
    ||||  |||||||||||||||||||||||| |||||||| |||||||||||||    
T  15705734 aaagggatcatttgttttttcaatgtgattattatggtcgattatggctcttg 15705786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 5 - 244
Target Start/End: Complemental strand, 12916024 - 12915785
Alignment:
Q  5 gatggacatcatcatcactgcagagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaataga 104  Q
    |||||||| ||  ||||||| ||| ||| | ||||| || |||||||| |||||||| ||||| ||||||||||||||||||||||||||||||||||||    
T  12916024 gatggacaccaagatcactgaagattttaaccaattcttgtggcttaaggcggttccgttaaaggttaacatttttgtttggcgtctctttctgaataga 12915925  T
Q  105 cttgctacaaaggacaaccttcgcaagaggaatgtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggaggaaagatatcatttgt 204  Q
     ||||||||||| ||||| | ||||| ||||||||||||  |||||   ||  ||||||||||||||||||||||||||||||||||||| |  |||| |    
T  12915924 attgctacaaagaacaacttgcgcaaaaggaatgtccttgcggctaacaatgtttcttgtgcggccttgtgtggtaaggaggaggaaagagacaatttat 12915825  T
Q  205 tttttcaatgtgatttttatggtcaattatggctcttggt 244  Q
    |||||||||||||   |||||| |  ||||||||||||||    
T  12915824 tttttcaatgtgaccattatgggcggttatggctcttggt 12915785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 18 - 242
Target Start/End: Complemental strand, 3621722 - 3621498
Alignment:
Q  18 atcactgcagagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaagg 117  Q
    ||||||||||||||| |||||||||||||||||||| |||| || ||||| ||||| |||||||| |||||||| ||||||||||||||||| |||||||    
T  3621722 atcactgcagagtttaatcaatttttatggcttaaaccggtcccattaaaggttaatatttttgtatggcgtctttttctgaatagacttgcaacaaagg 3621623  T
Q  118 acaaccttcgcaagaggaatgtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggaggaaagatatcatttgttttttcaatgtga 217  Q
    ||||||| || |||||||| || ||| ||| | |  ||   ||||| ||| |||||||||||||||||||||||||| | ||||| ||||| ||||||||    
T  3621622 acaacctgcgtaagaggaacgttcttgaggtttccaatgtgtcttgcgcgaccttgtgtggtaaggaggaggaaagagaccatttttttttccaatgtga 3621523  T
Q  218 tttttatggtcaattatggctcttg 242  Q
    |  ||||||||  ||||||||||||    
T  3621522 tcattatggtcggttatggctcttg 3621498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 18 - 238
Target Start/End: Original strand, 15649069 - 15649289
Alignment:
Q  18 atcactgcagagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaagg 117  Q
    |||| ||||||||||||||| || |||||||||||||| || || ||||| ||||| |||||||||||| | |||||||||||| | |||||||||||||    
T  15649069 atcaatgcagagtttgatcatttattatggcttaaagcagtccctttaaaggttaatatttttgtttggaggctctttctgaatcgccttgctacaaagg 15649168  T
Q  118 acaaccttcgcaagaggaatgtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggaggaaagatatcatttgttttttcaatgtga 217  Q
    | || ||||||||| ||||||||||  |||||||  |   || |||||   | || ||||||||||||||||||||| | ||||| ||||||||||||||    
T  15649169 ataatcttcgcaagcggaatgtcctcgaggctaccaacgttttttgtggtactttatgtggtaaggaggaggaaagagaccatttattttttcaatgtga 15649268  T
Q  218 tttttatggtcaattatggct 238  Q
    || ||||||||  ||||||||    
T  15649269 ttattatggtcggttatggct 15649289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 34 - 115
Target Start/End: Original strand, 50693772 - 50693853
Alignment:
Q  34 atcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaa 115  Q
    |||||||||||||| | ||||||||||| || || |||||||||||||||||||||||||||||||||||||||||||||||    
T  50693772 atcaatttttatggttgaaagcggttccgttgaaggttaacatttttgtttggcgtctctttctgaatagacttgctacaaa 50693853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 34 - 115
Target Start/End: Complemental strand, 36951405 - 36951324
Alignment:
Q  34 atcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaa 115  Q
    |||||||||||||| | ||||||||||| || || |||||||||||||| ||||||||||||||||||||||||||||||||    
T  36951405 atcaatttttatggttgaaagcggttccgttgaaggttaacatttttgtatggcgtctctttctgaatagacttgctacaaa 36951324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 34 - 115
Target Start/End: Original strand, 17469142 - 17469223
Alignment:
Q  34 atcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaa 115  Q
    |||| ||||||||| | ||||||||||| || || ||||||||||||||||||| |||||||||||||||||||||||||||    
T  17469142 atcattttttatggttgaaagcggttccgttgaaggttaacatttttgtttggcatctctttctgaatagacttgctacaaa 17469223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 50 - 121
Target Start/End: Complemental strand, 24059831 - 24059760
Alignment:
Q  50 taaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaaggacaa 121  Q
    |||| ||||| | ||||||||||| ||||||||||| ||||||||| ||| |||||||||||||||||||||    
T  24059831 taaaacggtttcgttaaaagttaatatttttgtttgacgtctctttatgagtagacttgctacaaaggacaa 24059760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 180 - 242
Target Start/End: Original strand, 17838698 - 17838760
Alignment:
Q  180 aaggaggaggaaagatatcatttgttttttcaatgtgatttttatggtcaattatggctcttg 242  Q
    ||||||||| ||||  |||||||||||||||||||||||| |||||||| |||||||||||||    
T  17838698 aaggaggagaaaagggatcatttgttttttcaatgtgattattatggtcgattatggctcttg 17838760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 179 - 238
Target Start/End: Original strand, 6614197 - 6614256
Alignment:
Q  179 taaggaggaggaaagatatcatttgttttttcaatgtgatttttatggtcaattatggct 238  Q
    |||||||||||||||  ||||||||||||| |||||||||| ||||||||  ||||||||    
T  6614197 taaggaggaggaaagggatcatttgtttttccaatgtgattattatggtcggttatggct 6614256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 189; Significance: 1e-102; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 18 - 242
Target Start/End: Complemental strand, 49369987 - 49369763
Alignment:
Q  18 atcactgcagagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaagg 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  49369987 atcactgcagagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttttttggcgtctctttctgaatagacttgctacaaagg 49369888  T
Q  118 acaaccttcgcaagaggaatgtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggaggaaagatatcatttgttttttcaatgtga 217  Q
    |||| ||||||||||||||||||||| ||||| ||||| |||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||    
T  49369887 acaatcttcgcaagaggaatgtcctttaggctgcagatgcttcttgtgcggccttgtgtggtaaggaggaggaaagggatcatttgttttttcaatgtga 49369788  T
Q  218 tttttatggtcaattatggctcttg 242  Q
    || |||||||| |||||||||||||    
T  49369787 ttattatggtcgattatggctcttg 49369763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 154; E-Value: 9e-82
Query Start/End: Original strand, 17 - 238
Target Start/End: Original strand, 41342809 - 41343030
Alignment:
Q  17 catcactgcagagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaag 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  41342809 catcactgcagagtttgatcaatttttatggcttaaagcggttcctttaaaagttaacatttttgtttggcgtctctttctgaatagatttgctacaaag 41342908  T
Q  117 gacaaccttcgcaagaggaatgtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggaggaaagatatcatttgttttttcaatgtg 216  Q
    ||||| ||||||||||||||||||||| |||||||  ||  ||||||||  ||||| ||||||||||||||||||||  ||||||||||||| |||||||    
T  41342909 gacaatcttcgcaagaggaatgtccttgaggctaccaatgtttcttgtggagccttatgtggtaaggaggaggaaagggatcatttgtttttccaatgtg 41343008  T
Q  217 atttttatggtcaattatggct 238  Q
    ||| ||||||||  ||||||||    
T  41343009 attattatggtcggttatggct 41343030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 17 - 214
Target Start/End: Complemental strand, 27030173 - 27029976
Alignment:
Q  17 catcactgcagagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaag 116  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| || ||| ||||||||||||||| ||||    
T  27030173 catcactgcagattttgatcaatttttatggcttaaagcggttcccttaaaagtcaatatttttgtttggcggctttttttgaatagacttgctataaag 27030074  T
Q  117 gacaaccttcgcaagaggaatgtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggaggaaagatatcatttgttttttcaatg 214  Q
    || || ||||| ||||||||||||||| |||||||  ||  ||||||||  ||  | ||||||||||||||||||||| ||||||||||||| |||||    
T  27030073 gataatcttcgtaagaggaatgtccttgaggctaccaatgtttcttgtggtgctctatgtggtaaggaggaggaaagagatcatttgtttttccaatg 27029976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 17 - 238
Target Start/End: Complemental strand, 10004152 - 10003931
Alignment:
Q  17 catcactgcagagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaag 116  Q
    |||||||||||| |||||||||||||||||||||||||||||||| |||||||| || ||||||| |||||| |||||||||||||||||||||||||||    
T  10004152 catcactgcagattttgatcaatttttatggcttaaagcggttcctttaaaagtcaatatttttgcttggcggctctttctgaatagacttgctacaaag 10004053  T
Q  117 gacaaccttcgcaagaggaatgtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggaggaaagatatcatttgttttttcaatgtg 216  Q
    || || ||||| |||| ||||||| || |||||||  ||  ||||||||  ||  | ||||||||||||||||||||  |||||||||||||  |||| |    
T  10004052 gataatcttcgtaagaagaatgtctttgaggctaccaatgtttcttgtggtgctctttgtggtaaggaggaggaaagggatcatttgtttttcgaatgcg 10003953  T
Q  217 atttttatggtcaattatggct 238  Q
    | ||||||||||  ||||||||    
T  10003952 acttttatggtcggttatggct 10003931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 50 - 139
Target Start/End: Original strand, 24545091 - 24545180
Alignment:
Q  50 taaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaaggacaaccttcgcaagaggaatgt 139  Q
    ||||| |||||| ||||||||||| |||||||| ||||||||||||||||| ||||||||||||||||| || ||||| ||||| |||||    
T  24545091 taaagtggttccgttaaaagttaatatttttgtctggcgtctctttctgaacagacttgctacaaaggataatcttcgaaagagaaatgt 24545180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 17 - 118
Target Start/End: Original strand, 28520838 - 28520939
Alignment:
Q  17 catcactgcagagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaag 116  Q
    ||||| || ||||||| |||||||||| ||||||||||||||| | ||||| || || || ||||| ||||||||||| |||||||||||||||||| ||    
T  28520838 catcattgaagagtttcatcaatttttgtggcttaaagcggtttcgttaaaggtgaatatatttgtatggcgtctcttcctgaatagacttgctacagag 28520937  T
Q  117 ga 118  Q
    ||    
T  28520938 ga 28520939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 56 - 115
Target Start/End: Complemental strand, 37669035 - 37668976
Alignment:
Q  56 ggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaa 115  Q
    |||||| || || |||||||||||||||||||||||||||||||||||||||| ||||||    
T  37669035 ggttccgttgaaggttaacatttttgtttggcgtctctttctgaatagacttgatacaaa 37668976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 51 - 118
Target Start/End: Complemental strand, 26996150 - 26996083
Alignment:
Q  51 aaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaagga 118  Q
    |||||| |||| ||||| ||||| |||||||| ||||||||||||||||||||||||| | |||||||    
T  26996150 aaagcgattccgttaaaggttaatatttttgtctggcgtctctttctgaatagacttggtgcaaagga 26996083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 175 - 242
Target Start/End: Complemental strand, 5557330 - 5557263
Alignment:
Q  175 gtggtaaggaggaggaaagatatcatttgttttttcaatgtgatttttatggtcaattatggctcttg 242  Q
    |||||||||||||||||||  | |||||||||||| ||||||||  |||||||| |||||| ||||||    
T  5557330 gtggtaaggaggaggaaagggaccatttgtttttttaatgtgatcattatggtcgattatgactcttg 5557263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 185; Significance: 1e-100; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 18 - 250
Target Start/End: Complemental strand, 23603482 - 23603251
Alignment:
Q  18 atcactgcagagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaagg 117  Q
    |||| ||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| ||||    
T  23603482 atcattgcggagtttgatcaatttttatggcttaaagcggttcctttaaaagttaacatttttgtttggcgactctttctgaatagacttgctactaagg 23603383  T
Q  118 acaaccttcgcaagaggaatgtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggaggaaagatatcatttgttttttcaatgtga 217  Q
    |||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||    
T  23603382 acaaccttcgcaagaggaatgtccttca-gctacaaatacttcttgtgcggccttgtgtggtaaggaggaggaaagagatcatctgttttttcaatgtga 23603284  T
Q  218 tttttatggtcaattatggctcttggtttcgaa 250  Q
    ||||||||||| | |||||||||||||||||||    
T  23603283 tttttatggtcgactatggctcttggtttcgaa 23603251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 7 - 242
Target Start/End: Complemental strand, 8595488 - 8595253
Alignment:
Q  7 tggacatcatcatcactgcagagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagact 106  Q
    |||||||||  |||| ||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  8595488 tggacatcaatatcattgcagagtttgatcaatttctatggcttaaagcggttcctttaaaagttaacatttttgtttggcgtctctttctgaatagact 8595389  T
Q  107 tgctacaaaggacaaccttcgcaagaggaatgtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggaggaaagatatcatttgttt 206  Q
    ||||||||||||||| ||||| ||||||||| ||||||||||||||||| ||||||||||||||||||||| |||||||||||||||  | |||||||||    
T  8595388 tgctacaaaggacaatcttcgtaagaggaatatccttcaggctacagatgcttcttgtgcggccttgtgtgctaaggaggaggaaagggaccatttgttt 8595289  T
Q  207 tttcaatgtgatttttatggtcaattatggctcttg 242  Q
    ||||||||||||| ||||||||  ||||||||||||    
T  8595288 tttcaatgtgattattatggtcgtttatggctcttg 8595253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 7 - 238
Target Start/End: Complemental strand, 42462951 - 42462720
Alignment:
Q  7 tggacatcatcatcactgcagagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagact 106  Q
    ||||||||| ||| ||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||| ||||||||||||||||    
T  42462951 tggacatcaacattactgcagagtttgatcaatttttatggcttaaaacggctcccttaaaagttaacatttttgtttggcgtttctttctgaatagact 42462852  T
Q  107 tgctacaaaggacaaccttcgcaagaggaatgtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggaggaaagatatcatttgttt 206  Q
    ||||||||||||||| |||||||||||||||||||||||||||||| || | ||||||||| |||||| || |||||||||||||||| |||||||||||    
T  42462851 tgctacaaaggacaatcttcgcaagaggaatgtccttcaggctacaaatgcatcttgtgcgaccttgtatgataaggaggaggaaagagatcatttgttt 42462752  T
Q  207 tttcaatgtgatttttatggtcaattatggct 238  Q
    ||||||||||||| ||||||||  ||||||||    
T  42462751 tttcaatgtgattattatggtcggttatggct 42462720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 17 - 238
Target Start/End: Original strand, 23571622 - 23571843
Alignment:
Q  17 catcactgcagagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaag 116  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||    
T  23571622 catcactgtagagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtatgacgtctctttctgaatagacttgctacaaag 23571721  T
Q  117 gacaaccttcgcaagaggaatgtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggaggaaagatatcatttgttttttcaatgtg 216  Q
    ||||| |||||||||| |||||||||| |||||||  ||  ||||||||  || || ||||||||||||||||||||  ||||||||||||| ||||| |    
T  23571722 gacaatcttcgcaagacgaatgtccttgaggctaccaatgtttcttgtggtgctttatgtggtaaggaggaggaaagggatcatttgtttttccaatgcg 23571821  T
Q  217 atttttatggtcaattatggct 238  Q
    ||| ||||||||  ||||||||    
T  23571822 attattatggtcggttatggct 23571843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 7 - 242
Target Start/End: Complemental strand, 48547785 - 48547550
Alignment:
Q  7 tggacatcatcatcactgcagagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagact 106  Q
    ||||| ||| |||||||||||||||| |||||||||||||||||||||| ||||| ||||| ||||| |||||||| |||||||||||||||||||||||    
T  48547785 tggacttcaacatcactgcagagtttaatcaatttttatggcttaaagcagttccattaaaggttaatatttttgtctggcgtctctttctgaatagact 48547686  T
Q  107 tgctacaaaggacaaccttcgcaagaggaatgtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggaggaaagatatcatttgttt 206  Q
    ||| |||||||||||||| ||||||||||| |||||| ||| | |  ||  |||||| |||||||||||||||||||||||||||||  | |||||||||    
T  48547685 tgcaacaaaggacaacctgcgcaagaggaacgtccttgaggtttccaatgtttcttgcgcggccttgtgtggtaaggaggaggaaagggaccatttgttt 48547586  T
Q  207 tttcaatgtgatttttatggtcaattatggctcttg 242  Q
    ||||||||||||  |||||||| |||||||||||||    
T  48547585 tttcaatgtgatcattatggtcgattatggctcttg 48547550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 17 - 238
Target Start/End: Complemental strand, 3514905 - 3514684
Alignment:
Q  17 catcactgcagagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaag 116  Q
    |||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||  ||||||||||||||||||||||||||    
T  3514905 catcactgcagattttgatcaatttttatggcttaaagcggtacccttaaaagttaatatttttgtttggcggttctttctgaatagacttgctacaaag 3514806  T
Q  117 gacaaccttcgcaagaggaatgtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggaggaaagatatcatttgttttttcaatgtg 216  Q
    || || ||||||||||||||||| ||| ||||||   ||  ||||||||  || || ||||||||||||||||||||  ||||||||||||| ||||| |    
T  3514805 gataatcttcgcaagaggaatgttcttgaggctatcaatgtttcttgtggtgctttatgtggtaaggaggaggaaagggatcatttgtttttccaatgcg 3514706  T
Q  217 atttttatggtcaattatggct 238  Q
    ||| ||||||||  ||||||||    
T  3514705 attattatggtcgcttatggct 3514684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 18 - 238
Target Start/End: Original strand, 17153809 - 17154029
Alignment:
Q  18 atcactgcagagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaagg 117  Q
    |||| ||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||| ||||||| |||||| |||||||||||||||||||||    
T  17153809 atcaatgcagagtttgatcaatttttatggcttaaagcggttccattaaaagttaatatttttatttggcggctctttatgaatagacttgctacaaagg 17153908  T
Q  118 acaaccttcgcaagaggaatgtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggaggaaagatatcatttgttttttcaatgtga 217  Q
    | || ||||||||||||||||||||  |||||||  ||  || |||||  || || |||||||| |||||||||||  ||||||||||||| ||||||||    
T  17153909 ataatcttcgcaagaggaatgtcctcgaggctaccaatgttttttgtggtgctttatgtggtaaagaggaggaaagggatcatttgtttttccaatgtga 17154008  T
Q  218 tttttatggtcaattatggct 238  Q
    || ||||||||  ||||||||    
T  17154009 ttattatggtcggttatggct 17154029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 17 - 238
Target Start/End: Complemental strand, 9819281 - 9819060
Alignment:
Q  17 catcactgcagagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaag 116  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||| || |||| ||||||||| || ||||||||||||||||||||||||    
T  9819281 catcactgcagattttgatcaatttttatggcttaaagcggttcccttaaaagtcaatatttatgtttggcggctttttctgaatagacttgctacaaag 9819182  T
Q  117 gacaaccttcgcaagaggaatgtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggaggaaagatatcatttgttttttcaatgtg 216  Q
    || || ||||| ||||||||||||||| |||||||  ||  ||||||||  || || ||||||||||||||||| |   ||||||||||||| ||||| |    
T  9819181 gataatcttcgtaagaggaatgtccttgaggctaccaatgtttcttgtggtgctttatgtggtaaggaggaggacaaggatcatttgtttttccaatgcg 9819082  T
Q  217 atttttatggtcaattatggct 238  Q
    | ||||||||||  ||||||||    
T  9819081 acttttatggtcgtttatggct 9819060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 63 - 238
Target Start/End: Original strand, 53152132 - 53152307
Alignment:
Q  63 ttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaaggacaaccttcgcaagaggaatgtccttcaggctacagatacttctt 162  Q
    ||||||||||| |||||||||||| | ||||||| |||| |||||||||||||||| || ||||||||||||||||||||  |||||||  ||  || ||    
T  53152132 ttaaaagttaatatttttgtttggaggctctttcagaatcgacttgctacaaaggataatcttcgcaagaggaatgtcctcgaggctaccaatgtttttt 53152231  T
Q  163 gtgcggccttgtgtggtaaggaggaggaaagatatcatttgttttttcaatgtgatttttatggtcaattatggct 238  Q
    |||  || || ||||| ||||||||||||||| |||||||||||||||||||||||| ||||||||  ||||||||    
T  53152232 gtggtgctttatgtggcaaggaggaggaaagagatcatttgttttttcaatgtgattattatggtcggttatggct 53152307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 7 - 182
Target Start/End: Original strand, 42459294 - 42459469
Alignment:
Q  7 tggacatcatcatcactgcagagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagact 106  Q
    |||||| || |||||||| ||| ||| | ||||| ||||||||||| | |||||| ||||| ||||||||||||||||| ||||| |||||||||||| |    
T  42459294 tggacaacaacatcactgaagattttaaccaattcttatggcttaaggaggttccgttaaaggttaacatttttgtttgacgtctttttctgaatagaat 42459393  T
Q  107 tgctacaaaggacaaccttcgcaagaggaatgtccttcaggctacagatact-tcttgtgcggccttgtgtggtaag 182  Q
    |||||||||||||||| | | ||| |||||||||||| |||||| | | | | ||||||||| ||||||||||||||    
T  42459394 tgctacaaaggacaacttgcacaaaaggaatgtccttgaggcta-acaaagtatcttgtgcgaccttgtgtggtaag 42459469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 34 - 115
Target Start/End: Complemental strand, 16664180 - 16664099
Alignment:
Q  34 atcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaa 115  Q
    |||||||||||||| | ||||||||||| || || |||||||||||||||||||||||||||||||||||||||||||||||    
T  16664180 atcaatttttatggttgaaagcggttccgttgaaggttaacatttttgtttggcgtctctttctgaatagacttgctacaaa 16664099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 34 - 115
Target Start/End: Complemental strand, 52196490 - 52196409
Alignment:
Q  34 atcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaa 115  Q
    |||||||||||||| | ||||||||||| || || |||||||||||||||||||| ||||||||||||||||||||||||||    
T  52196490 atcaatttttatggttgaaagcggttccgttgaaggttaacatttttgtttggcgcctctttctgaatagacttgctacaaa 52196409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 42 - 115
Target Start/End: Original strand, 39632858 - 39632931
Alignment:
Q  42 ttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaa 115  Q
    |||||| | ||||||||||| || || |||||||||||||||||||||||||||||||||||||||||||||||    
T  39632858 ttatggttgaaagcggttccgttgaaggttaacatttttgtttggcgtctctttctgaatagacttgctacaaa 39632931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 51 - 115
Target Start/End: Complemental strand, 10754250 - 10754186
Alignment:
Q  51 aaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaa 115  Q
    ||||||||||| || || |||||||| |||||||||||||||||| |||||||||||||||||||    
T  10754250 aaagcggttccgttgaaggttaacatctttgtttggcgtctctttatgaatagacttgctacaaa 10754186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0032 (Bit Score: 172; Significance: 2e-92; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 7 - 242
Target Start/End: Original strand, 58387 - 58622
Alignment:
Q  7 tggacatcatcatcactgcagagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagact 106  Q
    ||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  58387 tggacatcaacatcactgcagagtttaatcaatttttatggcttaaagcggttcccttaaaggttaacatttttgtttggcgtctctttctgaatagact 58486  T
Q  107 tgctacaaaggacaaccttcgcaagaggaatgtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggaggaaagatatcatttgttt 206  Q
    ||||||||||||||||||||||||||||||||||||| |||||||  ||| ||||||||||||||||||||||||||||||||||||  | | |||||||    
T  58487 tgctacaaaggacaaccttcgcaagaggaatgtccttgaggctaccaatatttcttgtgcggccttgtgtggtaaggaggaggaaagggaccgtttgttt 58586  T
Q  207 tttcaatgtgatttttatggtcaattatggctcttg 242  Q
    |||||||||||   ||||||||  ||||||||||||    
T  58587 tttcaatgtgacaattatggtcggttatggctcttg 58622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 170; Significance: 3e-91; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 17 - 238
Target Start/End: Complemental strand, 74519 - 74298
Alignment:
Q  17 catcactgcagagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaag 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  74519 catcactgcagagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaag 74420  T
Q  117 gacaaccttcgcaagaggaatgtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggaggaaagatatcatttgttttttcaatgtg 216  Q
    ||||||||||||||||||||||||||| |||||||  ||  |||||||| ||||||||||||||||||||||||||   | ||||||||||| |||||||    
T  74419 gacaaccttcgcaagaggaatgtccttgaggctacctatgtttcttgtggggccttgtgtggtaaggaggaggaaatggaccatttgtttttccaatgtg 74320  T
Q  217 atttttatggtcaattatggct 238  Q
    ||| ||||||||| ||||||||    
T  74319 attattatggtcagttatggct 74298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 170; Significance: 3e-91; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 17 - 238
Target Start/End: Original strand, 40891765 - 40891986
Alignment:
Q  17 catcactgcagagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaag 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40891765 catcactgcagagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaag 40891864  T
Q  117 gacaaccttcgcaagaggaatgtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggaggaaagatatcatttgttttttcaatgtg 216  Q
    ||||||||||||||||||||||||||| |||||||  ||  |||||||| ||||||||||||||||||||||||||   | ||||||||||| |||||||    
T  40891865 gacaaccttcgcaagaggaatgtccttgaggctacctatgtttcttgtggggccttgtgtggtaaggaggaggaaatggaccatttgtttttccaatgtg 40891964  T
Q  217 atttttatggtcaattatggct 238  Q
    ||| ||||||||| ||||||||    
T  40891965 attattatggtcagttatggct 40891986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 17 - 238
Target Start/End: Complemental strand, 587005 - 586784
Alignment:
Q  17 catcactgcagagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaag 116  Q
    ||||||||||||||||||||  ||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| ||||||||||||||||||||    
T  587005 catcactgcagagtttgatcgttttttatggcttaaagcggttcccttaaaggttaatatttttgtttggcgtctctttttgaatagacttgctacaaag 586906  T
Q  117 gacaaccttcgcaagaggaatgtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggaggaaagatatcatttgttttttcaatgtg 216  Q
    ||||| ||||| || |||||||||||| |||||||  ||  |||  ||| |||||| ||||||||||||||||||||  |||||||||||||||||||||    
T  586905 gacaatcttcgtaaaaggaatgtccttgaggctaccaatgtttcaagtggggccttatgtggtaaggaggaggaaagggatcatttgttttttcaatgtg 586806  T
Q  217 atttttatggtcaattatggct 238  Q
    ||| |||||||| |||||||||    
T  586805 attattatggtcgattatggct 586784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 18 - 238
Target Start/End: Original strand, 37075592 - 37075812
Alignment:
Q  18 atcactgcagagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaagg 117  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| | ||||||| |||| |||||||||||||||    
T  37075592 atcactgcagagtttgatcaatttttatggcttaaagcggttcctttaaaagttaatatttttgtttggaggctctttcagaatcgacttgctacaaagg 37075691  T
Q  118 acaaccttcgcaagaggaatgtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggaggaaagatatcatttgttttttcaatgtga 217  Q
    | || ||||||||||||||||||||  |||||||  ||  || |||||  || || ||||| ||||||||||||||  ||||||||||||||||||||||    
T  37075692 ataatcttcgcaagaggaatgtcctcgaggctaccaatgttttttgtggtgctttatgtggcaaggaggaggaaagggatcatttgttttttcaatgtga 37075791  T
Q  218 tttttatggtcaattatggct 238  Q
    || ||||||||  ||||||||    
T  37075792 ttattatggtcggttatggct 37075812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 17 - 238
Target Start/End: Complemental strand, 12121807 - 12121586
Alignment:
Q  17 catcactgcagagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaag 116  Q
    |||||||||| | ||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| |||||||||||||||||||||||||||    
T  12121807 catcactgcaaattttgatcaatttttatggcttaaagcggtacccttaaaagttaatatttttgtttggcggctctttctgaatagacttgctacaaag 12121708  T
Q  117 gacaaccttcgcaagaggaatgtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggaggaaagatatcatttgttttttcaatgtg 216  Q
    || || ||||||||||||||||| ||  ||| |||  ||  ||||||||  || || |||||||||||||||||||   ||||||||||||| ||||| |    
T  12121707 gataatcttcgcaagaggaatgttctagaggataccaatgtttcttgtggtgctttatgtggtaaggaggaggaaatggatcatttgtttttccaatgcg 12121608  T
Q  217 atttttatggtcaattatggct 238  Q
    ||| |||||||| |||||||||    
T  12121607 attattatggtcgattatggct 12121586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 17 - 238
Target Start/End: Complemental strand, 24819918 - 24819697
Alignment:
Q  17 catcactgcagagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaag 116  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| || ||||||||||||||||||||||||    
T  24819918 catcactgcagattttgatcaatttttatggcttaaagcggttcccttaaaagtcaatatttttgtttggcggctttttctgaatagacttgctacaaag 24819819  T
Q  117 gacaaccttcgcaagaggaatgtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggaggaaagatatcatttgttttttcaatgtg 216  Q
    || || ||||| |||||||| |||||| |||||||  |   ||||||||  || || ||||||||||||||||||||  ||||||||||||| ||||| |    
T  24819818 gataatcttcgtaagaggaacgtccttgaggctaccaacgtttcttgtggtgctttatgtggtaaggaggaggaaagggatcatttgtttttccaatgcg 24819719  T
Q  217 atttttatggtcaattatggct 238  Q
    | | ||||||||  ||||||||    
T  24819718 actattatggtcgtttatggct 24819697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 30 - 238
Target Start/End: Original strand, 36575396 - 36575604
Alignment:
Q  30 tttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaaggacaaccttcgca 129  Q
    ||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| || |||||||||||||||||||||||||| || ||||| |    
T  36575396 tttgatcaatttttatggcttaaagcggttcccttaaaagtcaatatttttgtttggcggctttttctgaatagacttgctacaaaggataatcttcgta 36575495  T
Q  130 agaggaatgtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggaggaaagatatcatttgttttttcaatgtgatttttatggtca 229  Q
    |||||||||||||| |||||||  ||  ||||||||  ||  | ||||||||||||||||||||  ||||||||||||| ||||| || ||||||||||     
T  36575496 agaggaatgtccttgaggctaccaatgtttcttgtggtgctctatgtggtaaggaggaggaaagggatcatttgtttttccaatgcgacttttatggtcg 36575595  T
Q  230 attatggct 238  Q
     ||||||||    
T  36575596 tttatggct 36575604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 18 - 238
Target Start/End: Original strand, 9403134 - 9403347
Alignment:
Q  18 atcactgcagagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaagg 117  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||         |||||| |||||||||||||||    
T  9403134 atcactgcagagtttgatcaatttttatggcttaaagcggttcctttaaaagttaatatttttgtttggac-------ctgaatcgacttgctacaaagg 9403226  T
Q  118 acaaccttcgcaagaggaatgtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggaggaaagatatcatttgttttttcaatgtga 217  Q
    | || ||||||||||||||||||||  |||||||  ||  || |||||  || || ||||||||||||||||||||  ||||||||||||| ||||||||    
T  9403227 ataatcttcgcaagaggaatgtcctcgaggctaccaatgttttttgtggtgctttatgtggtaaggaggaggaaagggatcatttgtttttccaatgtga 9403326  T
Q  218 tttttatggtcaattatggct 238  Q
    || ||||||||  ||||||||    
T  9403327 ttattatggtcggttatggct 9403347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 18 - 238
Target Start/End: Complemental strand, 34982067 - 34981847
Alignment:
Q  18 atcactgcagagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaagg 117  Q
    |||| ||||||||||||||| |||||||||||||||||||| || ||||| ||||| |||||||||||| | |||||||||||| | |||||||||||||    
T  34982067 atcaatgcagagtttgatcagtttttatggcttaaagcggtccctttaaaggttaatatttttgtttggaggctctttctgaatcgccttgctacaaagg 34981968  T
Q  118 acaaccttcgcaagaggaatgtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggaggaaagatatcatttgttttttcaatgtga 217  Q
    | || ||||||||||||||||||||  |||||||  |   ||  ||||  || || ||||||||||||||||||||| | ||||| || |||||||||||    
T  34981967 ataatcttcgcaagaggaatgtcctcgaggctaccaacgttttctgtggtgctttatgtggtaaggaggaggaaagagaccatttattctttcaatgtga 34981868  T
Q  218 tttttatggtcaattatggct 238  Q
    || ||||||||  ||||||||    
T  34981867 ttattatggtcggttatggct 34981847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 18 - 218
Target Start/End: Original strand, 20705494 - 20705694
Alignment:
Q  18 atcactgcagagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaagg 117  Q
    |||||||||||||||  ||||||||||||||||||| | || || || || ||||| |||||||| |||||||| ||||||||||||||||| |||||||    
T  20705494 atcactgcagagtttactcaatttttatggcttaaaccagtcccattgaaggttaatatttttgtatggcgtctttttctgaatagacttgcaacaaagg 20705593  T
Q  118 acaaccttcgcaagaggaatgtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggaggaaagatatcatttgttttttcaatgtga 217  Q
    | || || |||||||| || || ||| ||| | |  ||    |||||||||| |||||||||||||||||||||||| | ||||||||||| ||||||||    
T  20705594 ataatctgcgcaagagaaacgttcttgaggtttctaatgtggcttgtgcggctttgtgtggtaaggaggaggaaagagaccatttgtttttccaatgtga 20705693  T
Q  218 t 218  Q
    |    
T  20705694 t 20705694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 18 - 218
Target Start/End: Original strand, 20873538 - 20873738
Alignment:
Q  18 atcactgcagagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaagg 117  Q
    |||||||||||||||  ||||||||||||||||||| | || || || || ||||| |||||||| |||||||| ||||||||||||||||| |||||||    
T  20873538 atcactgcagagtttactcaatttttatggcttaaaccagtcccattgaaggttaatatttttgtatggcgtctttttctgaatagacttgcaacaaagg 20873637  T
Q  118 acaaccttcgcaagaggaatgtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggaggaaagatatcatttgttttttcaatgtga 217  Q
    | || || |||||||| || || ||| ||| | |  ||    |||||||||| |||||||||||||||||||||||| | ||||||||||| ||||||||    
T  20873638 ataatctgcgcaagagaaacgttcttgaggtttctaatgtggcttgtgcggctttgtgtggtaaggaggaggaaagagaccatttgtttttccaatgtga 20873737  T
Q  218 t 218  Q
    |    
T  20873738 t 20873738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 34 - 115
Target Start/End: Original strand, 22865766 - 22865847
Alignment:
Q  34 atcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaa 115  Q
    |||||||||||||| | ||||| ||||| || || |||||||||||||||||||||||||||||||||||||||||||||||    
T  22865766 atcaatttttatggttgaaagcagttccgttgaaggttaacatttttgtttggcgtctctttctgaatagacttgctacaaa 22865847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 34 - 115
Target Start/End: Complemental strand, 47549050 - 47548969
Alignment:
Q  34 atcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaa 115  Q
    |||||||||||||| | ||||| ||||| || || |||||||||||||||||||||||||||||||||||||||||||||||    
T  47549050 atcaatttttatggttgaaagcagttccgttgaaggttaacatttttgtttggcgtctctttctgaatagacttgctacaaa 47548969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 34 - 115
Target Start/End: Complemental strand, 47553493 - 47553412
Alignment:
Q  34 atcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaa 115  Q
    |||||||||||||| | ||||| ||||| || || |||||||||||||||||||||||||||||||||||||||||||||||    
T  47553493 atcaatttttatggttgaaagcagttccgttgaaggttaacatttttgtttggcgtctctttctgaatagacttgctacaaa 47553412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 34 - 118
Target Start/End: Original strand, 27987585 - 27987669
Alignment:
Q  34 atcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaagga 118  Q
    |||| ||||| |||| |||||||||||| ||||| ||||| |||||||| |||||||||||||||||||||||||||||||||||    
T  27987585 atcattttttgtggcataaagcggttccgttaaaggttaatatttttgtatggcgtctctttctgaatagacttgctacaaagga 27987669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 39 - 118
Target Start/End: Complemental strand, 27869099 - 27869020
Alignment:
Q  39 tttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaagga 118  Q
    ||||||||||| |||||||||   ||||| |||||||| |||||||||||||||||||||||||||||||||||||||||    
T  27869099 tttttatggctaaaagcggttatgttaaaggttaacatatttgtttggcgtctctttctgaatagacttgctacaaagga 27869020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 34 - 139
Target Start/End: Original strand, 18815411 - 18815516
Alignment:
Q  34 atcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaaggacaaccttcgcaagag 133  Q
    |||| ||||| |||| |||||||||||| ||||| ||||| || ||||| | ||||||||||||||||||||||||||||||||| || ||  | |||||    
T  18815411 atcattttttgtggcataaagcggttccgttaaaggttaatatatttgtctagcgtctctttctgaatagacttgctacaaaggataatctgaggaagag 18815510  T
Q  134 gaatgt 139  Q
    ||||||    
T  18815511 gaatgt 18815516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 45 - 118
Target Start/End: Original strand, 8457213 - 8457286
Alignment:
Q  45 tggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaagga 118  Q
    |||| |||||||||| | ||||| ||||| |||||||| ||||||||||||||||||||||||| |||||||||    
T  8457213 tggcataaagcggtttcgttaaaggttaatatttttgtctggcgtctctttctgaatagacttgatacaaagga 8457286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 37 - 118
Target Start/End: Complemental strand, 5196834 - 5196753
Alignment:
Q  37 aatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaagga 118  Q
    ||||||| |||||||| ||| || | |||||||| || || ||| | || || |||||||| ||||||||||||||||||||    
T  5196834 aatttttgtggcttaaggcgatttcgttaaaagtgaatatctttatctgacgactctttctaaatagacttgctacaaagga 5196753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 168; Significance: 4e-90; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 7 - 250
Target Start/End: Complemental strand, 11266256 - 11266013
Alignment:
Q  7 tggacatcatcatcactgcagagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagact 106  Q
    |||||| || ||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||    
T  11266256 tggacaacaacatcactgcagagtttggtcaatttttatggcttaaagcggttcctttaaaagttaatatttttgtttggcgtctctttctgaatagact 11266157  T
Q  107 tgctacaaaggacaaccttcgcaagaggaatgtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggaggaaagatatcatttgttt 206  Q
    ||||||||||||||||||||||||||||||||||||| |||||||  ||  |||||| |||||||||||||||||||||||||||||  | |||||||||    
T  11266156 tgctacaaaggacaaccttcgcaagaggaatgtccttgaggctactaatgtttcttgcgcggccttgtgtggtaaggaggaggaaagggaccatttgttt 11266057  T
Q  207 tttcaatgtgatttttatggtcaattatggctcttggtttcgaa 250  Q
    ||||||||||| | ||||||||  |||||||||||| |||||||    
T  11266056 tttcaatgtgactattatggtcggttatggctcttgatttcgaa 11266013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 134; E-Value: 8e-70
Query Start/End: Original strand, 17 - 242
Target Start/End: Complemental strand, 27891919 - 27891694
Alignment:
Q  17 catcactgcagagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaag 116  Q
    |||||||||||||||| |||||||||||||||||||||||||||| ||||| ||||| |||||||| |||| ||||||||||||||||||||| ||||||    
T  27891919 catcactgcagagtttaatcaatttttatggcttaaagcggttccattaaaggttaatatttttgtctggcatctctttctgaatagacttgcaacaaag 27891820  T
Q  117 gacaaccttcgcaagaggaatgtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggaggaaagatatcatttgttttttcaatgtg 216  Q
    |||||||| ||||||||||| |||||||||| | |  ||   ||||| |||||||||||||||||||||||||||||  | |||||||||||||||||||    
T  27891819 gacaacctgcgcaagaggaacgtccttcaggtttccaatgtgtcttgcgcggccttgtgtggtaaggaggaggaaagggaccatttgttttttcaatgtg 27891720  T
Q  217 atttttatggtcaattatggctcttg 242  Q
    ||  |||||||| |||||||||||||    
T  27891719 atcattatggtcgattatggctcttg 27891694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 19 - 227
Target Start/End: Original strand, 5824972 - 5825180
Alignment:
Q  19 tcactgcagagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaagga 118  Q
    |||||||||||||||||||||||||||||||||||||||| || ||||||||||| |||||||||||| | |||||||||||| ||||||||||||||||    
T  5824972 tcactgcagagtttgatcaatttttatggcttaaagcggtccctttaaaagttaatatttttgtttggaggctctttctgaatcgacttgctacaaagga 5825071  T
Q  119 caaccttcgcaagaggaatgtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggaggaaagatatcatttgttttttcaatgtgat 218  Q
     || ||||||||||||||||||||  |||||||  ||  || |||||  || || ||||||||||||||||||||  ||||||||||||||| |||||||    
T  5825072 taatcttcgcaagaggaatgtcctcgaggctaccaatgttttttgtggtgctttatgtggtaaggaggaggaaagggatcatttgttttttcgatgtgat 5825171  T
Q  219 ttttatggt 227  Q
    | |||||||    
T  5825172 tattatggt 5825180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 18 - 238
Target Start/End: Original strand, 6678580 - 6678798
Alignment:
Q  18 atcactgcagagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaagg 117  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||| |||  || |||||||||||| | |||||||||||| |||||||||||||||    
T  6678580 atcactgcagagtttgatcaatttttatggcttaaagcggttcctttagaag--aatatttttgtttggaggctctttctgaatcgacttgctacaaagg 6678677  T
Q  118 acaaccttcgcaagaggaatgtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggaggaaagatatcatttgttttttcaatgtga 217  Q
    | || ||||||||||||||||||||  |||||||  ||  || |||||  || || | ||||||||||||||||||  ||||||||||||||||||||||    
T  6678678 ataatcttcgcaagaggaatgtcctcgaggctaccaatgttttttgtggtgctttatatggtaaggaggaggaaagtgatcatttgttttttcaatgtga 6678777  T
Q  218 tttttatggtcaattatggct 238  Q
    || ||||||||  ||||||||    
T  6678778 ttattatggtcggttatggct 6678798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 38 - 242
Target Start/End: Complemental strand, 29150504 - 29150301
Alignment:
Q  38 atttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaaggacaaccttcgcaagaggaat 137  Q
    ||||||||||||||| |||||||| ||||| ||||| |||||||||||| |||| || ||||||||||||||||||||||||||| | ||||| ||||||    
T  29150504 atttttatggcttaaggcggttccgttaaaggttaatatttttgtttggtgtcttttcctgaatagacttgctacaaaggacaacttgcgcaaaaggaat 29150405  T
Q  138 gtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggaggaaagatatcatttgttttttcaatgtgatttttatggtcaattatggc 237  Q
    |||| | ||||||   ||   |||||||||||||| ||||||||||| ||||||||| | ||||| ||||||||||||||   |||||| |  |||||||    
T  29150404 gtcc-tgaggctaacaatgtatcttgtgcggccttctgtggtaaggacgaggaaagagaccatttattttttcaatgtgaccattatggccggttatggc 29150306  T
Q  238 tcttg 242  Q
    |||||    
T  29150305 tcttg 29150301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 34 - 115
Target Start/End: Complemental strand, 29322997 - 29322916
Alignment:
Q  34 atcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaa 115  Q
    |||||||||||||| | ||||| ||||| || || |||||||||||||||||||||||||||||||||||||||||||||||    
T  29322997 atcaatttttatggttgaaagcagttccgttgaaggttaacatttttgtttggcgtctctttctgaatagacttgctacaaa 29322916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 17 - 118
Target Start/End: Original strand, 31962673 - 31962774
Alignment:
Q  17 catcactgcagagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaag 116  Q
    |||| ||| ||| |||| ||||||||||||||| |||| |||||| ||||| |||||||| |||||||||| ||||| ||||||||||||||||||||||    
T  31962673 catctctgaagattttgctcaatttttatggctaaaagtggttccgttaaaggttaacatatttgtttggcatctctatctgaatagacttgctacaaag 31962772  T
Q  117 ga 118  Q
    ||    
T  31962773 ga 31962774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 34 - 115
Target Start/End: Complemental strand, 38931973 - 38931892
Alignment:
Q  34 atcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaa 115  Q
    |||||||||||||| | |||||||||||  | || |||||||| |||||||||| |||||||||||||||||||||||||||    
T  38931973 atcaatttttatggttgaaagcggttccgctgaaggttaacatatttgtttggcatctctttctgaatagacttgctacaaa 38931892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 37 - 115
Target Start/End: Complemental strand, 8896447 - 8896369
Alignment:
Q  37 aatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaa 115  Q
    ||||||||||| | ||||||||||  || || ||||||||  |||||||||||||||||||||||||||||||||||||    
T  8896447 aatttttatggttgaaagcggttctgttgaaggttaacatagttgtttggcgtctctttctgaatagacttgctacaaa 8896369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 123 - 238
Target Start/End: Original strand, 10462244 - 10462359
Alignment:
Q  123 cttcgcaagaggaatgtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggaggaaagatatcatttgttttttcaatgtgattttt 222  Q
    ||||||||||||||||||||  |||||||  ||  || |||||  || || ||| ||||||||||||||||  ||||||||||||| |||||||||| ||    
T  10462244 cttcgcaagaggaatgtcctcgaggctaccaatgttttttgtggtgctttatgtagtaaggaggaggaaagggatcatttgtttttccaatgtgattatt 10462343  T
Q  223 atggtcaattatggct 238  Q
    ||||||  ||||||||    
T  10462344 atggtcggttatggct 10462359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 161; Significance: 6e-86; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 7 - 242
Target Start/End: Complemental strand, 38938701 - 38938468
Alignment:
Q  7 tggacatcatcatcactgcagagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagact 106  Q
    ||||||||| |||||||  |||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  38938701 tggacatcagcatcact--agagtttgatcagtttttatggcttaaagcggttcccttaaaaattaacatttttgtttggcgtctctttctgaatagact 38938604  T
Q  107 tgctacaaaggacaaccttcgcaagaggaatgtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggaggaaagatatcatttgttt 206  Q
    | ||||||||||||| |||||||||||||||||| ||||||||||| || |||||||||||||||| ||||||||||||||||||||  | ||||| |||    
T  38938603 tactacaaaggacaatcttcgcaagaggaatgtctttcaggctacatatgcttcttgtgcggccttatgtggtaaggaggaggaaagggaccatttattt 38938504  T
Q  207 tttcaatgtgatttttatggtcaattatggctcttg 242  Q
    ||||||||||||| |||||||| |||||| ||||||    
T  38938503 tttcaatgtgattattatggtcgattatgactcttg 38938468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 17 - 235
Target Start/End: Complemental strand, 30276110 - 30275892
Alignment:
Q  17 catcactgcagagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaag 116  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||| | ||||||||||||||||| |||||||||    
T  30276110 catcactgcagattttgatcaatttttatggcttaaagcggttcccttaaaagttaatatttttgtttggaggctctttctgaatagactcgctacaaag 30276011  T
Q  117 gacaaccttcgcaagaggaatgtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggaggaaagatatcatttgttttttcaatgtg 216  Q
    || || ||||||||||||||||| ||| |||||||  ||  ||||||||  || || ||||||||||||||||||||| ||||||||||||| |||||||    
T  30276010 gataatcttcgcaagaggaatgttcttgaggctaccaatgtttcttgtggtgctttatgtggtaaggaggaggaaagagatcatttgtttttccaatgtg 30275911  T
Q  217 atttttatggtcaattatg 235  Q
    ||| |||||||| ||||||    
T  30275910 attattatggtcgattatg 30275892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 18 - 238
Target Start/End: Complemental strand, 32350094 - 32349874
Alignment:
Q  18 atcactgcagagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaagg 117  Q
    ||||||||||| ||||||||||||||||||||||||||| |||||||||||||||| |||||||||| | | ||||||||||||||||||||||||||||    
T  32350094 atcactgcagattttgatcaatttttatggcttaaagcgattcccttaaaagttaatatttttgtttcgtggctctttctgaatagacttgctacaaagg 32349995  T
Q  118 acaaccttcgcaagaggaatgtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggaggaaagatatcatttgttttttcaatgtga 217  Q
    | |  ||||||||||||||||| ||| |||||||  ||  ||||||||  || || ||||||||||||||||||||  ||||||||||||| ||||| ||    
T  32349994 atattcttcgcaagaggaatgttcttgaggctaccaatgtttcttgtggtgctttatgtggtaaggaggaggaaagggatcatttgtttttccaatgcga 32349895  T
Q  218 tttttatggtcaattatggct 238  Q
    || |||||||| |||||||||    
T  32349894 ttattatggtcgattatggct 32349874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 18 - 227
Target Start/End: Complemental strand, 23385063 - 23384854
Alignment:
Q  18 atcactgcagagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaagg 117  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| |||||||||||||||| |||||||||||    
T  23385063 atcactgcagagtttgatcaatttttatggcttaaagcggttcctttaaaagttaatatttttgtttggcggctctttctgaatagacatgctacaaagg 23384964  T
Q  118 acaaccttcgcaagaggaatgtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggaggaaagatatcatttgttttttcaatgtga 217  Q
    | || ||||||||||||||||||||  |||||||  ||  || |||||  || || |||||||| |||||||||||  |||||||||| || ||||||||    
T  23384963 ataatcttcgcaagaggaatgtcctcgaggctaccaatgttttttgtggtgctttatgtggtaaagaggaggaaagtgatcatttgttcttccaatgtga 23384864  T
Q  218 tttttatggt 227  Q
    || |||||||    
T  23384863 ttattatggt 23384854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 19 - 227
Target Start/End: Complemental strand, 21963627 - 21963419
Alignment:
Q  19 tcactgcagagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaagga 118  Q
    |||||||||||||||||||||||||||||||||||||||| || ||||||||||| |||||||||||| | |||||||||||| ||||||||||||||||    
T  21963627 tcactgcagagtttgatcaatttttatggcttaaagcggtccctttaaaagttaatatttttgtttggaggctctttctgaatcgacttgctacaaagga 21963528  T
Q  119 caaccttcgcaagaggaatgtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggaggaaagatatcatttgttttttcaatgtgat 218  Q
     || ||||||||||||||||||||  |||||||  ||  || |||||  || || |||||||||||||||||||   ||||||||||||||| |||||||    
T  21963527 taatcttcgcaagaggaatgtcctcgaggctaccaatgttttttgtggtgctttatgtggtaaggaggaggaaaaggatcatttgttttttcgatgtgat 21963428  T
Q  219 ttttatggt 227  Q
    | |||||||    
T  21963427 tattatggt 21963419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 19 - 192
Target Start/End: Complemental strand, 21964812 - 21964639
Alignment:
Q  19 tcactgcagagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaagga 118  Q
    |||||||||||||||||||||||||||||||||||||||| || ||||||||||| |||||||||||| | |||||||||||| ||||||||||||||||    
T  21964812 tcactgcagagtttgatcaatttttatggcttaaagcggtccctttaaaagttaatatttttgtttggaggctctttctgaatcgacttgctacaaagga 21964713  T
Q  119 caaccttcgcaagaggaatgtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggaggaaa 192  Q
     || ||||||||||||||||||||  |||||||  ||  || |||||  || || |||||||||||||||||||    
T  21964712 taatcttcgcaagaggaatgtcctcgaggctaccaatgttttttgtggtgctttatgtggtaaggaggaggaaa 21964639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 68 - 238
Target Start/End: Original strand, 27914653 - 27914823
Alignment:
Q  68 agttaacatttttgtttggcgtctctttctgaatagacttgctacaaaggacaaccttcgcaagaggaatgtccttcaggctacagatacttcttgtgcg 167  Q
    |||||| ||||||||||| ||  |||||||||||||||||||||||||||| || ||||||||||||||||||||  |||||||  ||  || || ||      
T  27914653 agttaatatttttgtttgacggttctttctgaatagacttgctacaaaggataatcttcgcaagaggaatgtcctcgaggctaccaatgttttttatggt 27914752  T
Q  168 gccttgtgtggtaaggaggaggaaagatatcatttgttttttcaatgtgatttttatggtcaattatggct 238  Q
    ||  | ||||||||||||||||||||  ||||||||||||| |||||||||| ||||||||  ||||||||    
T  27914753 gctatatgtggtaaggaggaggaaagggatcatttgtttttccaatgtgattattatggtcggttatggct 27914823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 34 - 115
Target Start/End: Complemental strand, 1258665 - 1258584
Alignment:
Q  34 atcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaa 115  Q
    |||||||||||||| | ||||||||||| || || |||||||| ||||||| ||||||||||||||||||||||||||||||    
T  1258665 atcaatttttatggttaaaagcggttccgttgaaggttaacatatttgttttgcgtctctttctgaatagacttgctacaaa 1258584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 35 - 143
Target Start/End: Complemental strand, 22300966 - 22300858
Alignment:
Q  35 tcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaaggacaaccttcgcaagagg 134  Q
    ||||||||||||| | |||| |||||| || || |||||||| |||||  | ||||||||||||||||||| |||||||||||| ||  | ||||| ||     
T  22300966 tcaatttttatggttaaaagtggttccgttgaaggttaacatatttgtaagacgtctctttctgaatagacctgctacaaaggataatttgcgcaaaaga 22300867  T
Q  135 aatgtcctt 143  Q
    |||||||||    
T  22300866 aatgtcctt 22300858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 127; Significance: 1e-65; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 7 - 228
Target Start/End: Complemental strand, 667496 - 667285
Alignment:
Q  7 tggacatcatcatcactgcagagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagact 106  Q
    ||||||||| |||||||||||||||| ||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  667496 tggacatcaacatcactgcagagtttaatcaatttttatggcttaaagtggttcccttaaaggttaacatttttgtttggcgtctctttctgaatagact 667397  T
Q  107 tgctacaaaggacaaccttcgcaagaggaatgtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggaggaaagatatcatttgttt 206  Q
    ||||||||||||||||||||||||||||||||| ||| |||||||| ||  |||||||||          |||||||||||||||||  |  ||||||||    
T  667396 tgctacaaaggacaaccttcgcaagaggaatgtacttgaggctacaaatgtttcttgtgc----------ggtaaggaggaggaaagggactatttgttt 667307  T
Q  207 tttcaatgtgatttttatggtc 228  Q
    ||||||||||| | ||||||||    
T  667306 tttcaatgtgactattatggtc 667285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 17 - 238
Target Start/End: Original strand, 18295397 - 18295618
Alignment:
Q  17 catcactgcagagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaag 116  Q
    |||||||||| | ||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| |||||||||||||||||||||||||||    
T  18295397 catcactgcatattttgatcaatttttatggcttaaagcggtacccttaaaagttaatatttttgtttggcggctctttctgaatagacttgctacaaag 18295496  T
Q  117 gacaaccttcgcaagaggaatgtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggaggaaagatatcatttgttttttcaatgtg 216  Q
    || || ||||||||||||||||| ||  ||| |||  ||  ||||||||  || || ||||||||||||||||||||  ||||||||||||| ||||| |    
T  18295497 gataatcttcgcaagaggaatgttctagaggttaccaatgtttcttgtggtgctttatgtggtaaggaggaggaaagggatcatttgtttttccaatgcg 18295596  T
Q  217 atttttatggtcaattatggct 238  Q
    ||| |||||||| |||||||||    
T  18295597 attattatggtcgattatggct 18295618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 18 - 242
Target Start/End: Original strand, 28604889 - 28605113
Alignment:
Q  18 atcactgcagagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaagg 117  Q
    ||||||||||||||| |||||||||||||||||||| |||| || ||||| ||||| |||||||| |||||||| ||||||||||||||||| |||||||    
T  28604889 atcactgcagagtttaatcaatttttatggcttaaaccggtcccattaaaggttaatatttttgtatggcgtctttttctgaatagacttgcaacaaagg 28604988  T
Q  118 acaaccttcgcaagaggaatgtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggaggaaagatatcatttgttttttcaatgtga 217  Q
    ||||||| || |||||||| || ||| ||| | |  ||   ||||| |||||||||||||||||||||||||||||| | ||||||||||| ||||||||    
T  28604989 acaacctgcgtaagaggaacgttcttgaggtttccaatgtgtcttgcgcggccttgtgtggtaaggaggaggaaagagaccatttgtttttccaatgtga 28605088  T
Q  218 tttttatggtcaattatggctcttg 242  Q
    |  ||||||||  ||||||||||||    
T  28605089 tcattatggtcggttatggctcttg 28605113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 17 - 214
Target Start/End: Complemental strand, 2894458 - 2894261
Alignment:
Q  17 catcactgcagagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaag 116  Q
    |||||||||||| |||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||| || ||||||||||||||||||||||||    
T  2894458 catcactgcagattttgatcaatttctatggcttaaagcggttcccttaaaagttaatatttttgtttggcggctttttctgaatagacttgctacaaag 2894359  T
Q  117 gacaaccttcgcaagaggaatgtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggaggaaagatatcatttgttttttcaatg 214  Q
    || || ||||| ||||||||| ||||| |||| ||  ||  ||||||||  || || |||||||| |||||||| |   ||||||||||||| |||||    
T  2894358 gataatcttcgtaagaggaatatccttgaggcaaccaatgtttcttgtggtgctttatgtggtaacgaggaggacatggatcatttgtttttccaatg 2894261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 34 - 218
Target Start/End: Original strand, 7218368 - 7218552
Alignment:
Q  34 atcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaaggacaaccttcgcaagag 133  Q
    ||||||||||||||||||| |||||||| ||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| ||  | || || ||    
T  7218368 atcaatttttatggcttaaggcggttccgttaaaggttaacatttttgtttggcgtctttttctgaatagacttgctacaaaggataatttgcgtaaaag 7218467  T
Q  134 gaatgtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggaggaaagatatcatttgttttttcaatgtgat 218  Q
    ||||||| || ||||||   ||   | |||||||||||||||||||||||||||||||||| | ||||| ||||| |||||||||    
T  7218468 gaatgtctttgaggctaacaatgtatattgtgcggccttgtgtggtaaggaggaggaaagagaccatttatttttccaatgtgat 7218552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 18 - 143
Target Start/End: Complemental strand, 17228156 - 17228031
Alignment:
Q  18 atcactgcagagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaagg 117  Q
    ||||||| ||||||| |||| ||||| ||||||||||| ||||| ||||| || ||||| ||||| |||||||||||||| |||||||||||||||||||    
T  17228156 atcactgaagagtttcatcattttttgtggcttaaagcagttccgttaaatgtgaacatatttgtctggcgtctctttctaaatagacttgctacaaagg 17228057  T
Q  118 acaaccttcgcaagaggaatgtcctt 143  Q
    ||||  | ||||| ||||||||||||    
T  17228056 acaatttgcgcaaaaggaatgtcctt 17228031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 34 - 115
Target Start/End: Original strand, 5391535 - 5391616
Alignment:
Q  34 atcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaa 115  Q
    |||||||||||||| | ||||||| ||| || || ||||||||||||||||||||  | ||||||||||||||||| |||||    
T  5391535 atcaatttttatggttgaaagcggctccgttgaaggttaacatttttgtttggcgcttatttctgaatagacttgcaacaaa 5391616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 91 - 214
Target Start/End: Original strand, 9759578 - 9759701
Alignment:
Q  91 tctttctgaatagacttgctacaaaggacaaccttcgcaagaggaatgtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggagga 190  Q
    |||||| ||||||||||||||||||||| || || ||||| ||||||||| || |||| ||   |   | ||||||||| ||| ||||||||||||| ||    
T  9759578 tctttccgaatagacttgctacaaaggataatctgcgcaaaaggaatgtctttgaggccacttttgtgtattgtgcggctttgcgtggtaaggaggatga 9759677  T
Q  191 aagatatcatttgttttttcaatg 214  Q
    |||  | ||| |||||||||||||    
T  9759678 aagggaccatctgttttttcaatg 9759701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 126; Significance: 5e-65; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 17 - 238
Target Start/End: Original strand, 26077727 - 26077948
Alignment:
Q  17 catcactgcagagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaag 116  Q
    |||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| |||||||||||||||||||||||||||    
T  26077727 catcactgcagattttgatcaatttttatggcttaaagcggtacccttaaaagttaatatttttgtttggcggctctttctgaatagacttgctacaaag 26077826  T
Q  117 gacaaccttcgcaagaggaatgtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggaggaaagatatcatttgttttttcaatgtg 216  Q
    ||||| |||||||| |||||||| ||| |||||||  ||  ||||||||  || || ||||||||||||||||||||  ||||||||||||| ||||| |    
T  26077827 gacaatcttcgcaaaaggaatgttcttgaggctaccaatgtttcttgtggtgctttatgtggtaaggaggaggaaagggatcatttgtttttccaatgcg 26077926  T
Q  217 atttttatggtcaattatggct 238  Q
    | | ||||||||  ||||||||    
T  26077927 aatattatggtcgcttatggct 26077948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 17 - 206
Target Start/End: Original strand, 31423242 - 31423431
Alignment:
Q  17 catcactgcagagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaag 116  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||| ||||| |||||||| || ||||||||||||||||||||||| ||||||    
T  31423242 catcactgcagagtttaatcaatttttatggcttaaagcggttcccttaaaggttaatatttttgtctgacgtctctttctgaatagacttgcaacaaag 31423341  T
Q  117 gacaaccttcgcaagaggaatgtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggaggaaagatatcatttgttt 206  Q
     ||||||||||||||||||| |||||| | | |||  ||  |||||| |||||||||||||||||||||||||||||  | |||||||||    
T  31423342 aacaaccttcgcaagaggaacgtccttgaaggtaccaatgtttcttgcgcggccttgtgtggtaaggaggaggaaagggaccatttgttt 31423431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 34 - 214
Target Start/End: Complemental strand, 29532561 - 29532381
Alignment:
Q  34 atcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaaggacaaccttcgcaagag 133  Q
    ||||||||||||||||||||||||| || ||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||  |  |||| ||    
T  29532561 atcaatttttatggcttaaagcggtaccattaaatgttaacatttttgtctggcgtctctttctgaatagacttgctacaaaggacaatttaagcaaaag 29532462  T
Q  134 gaatgtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggaggaaagatatcatttgttttttcaatg 214  Q
    |||||||||||  ||||   |||  ||||||| ||||||||||| |||||||||||||||  |||||||||| ||||||||    
T  29532461 gaatgtccttccagctaataatatatcttgtgtggccttgtgtgataaggaggaggaaagggatcatttgttctttcaatg 29532381  T

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Target: chr8; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 34 - 228
Target Start/End: Original strand, 26390260 - 26390454
Alignment:
Q  34 atcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaaggacaaccttcgcaagag 133  Q
    ||||||||||||||||||  ||||| || ||||| |||||||||||||| ||||||||||||||||||||||||||||||| ||||||  |  |||  ||    
T  26390260 atcaatttttatggcttacggcggtaccattaaaggttaacatttttgtctggcgtctctttctgaatagacttgctacaacggacaatttaagcataag 26390359  T
Q  134 gaatgtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggaggaaagatatcatttgttttttcaatgtgatttttatggtc 228  Q
    ||||||||||| |||||   |||  |||| |  ||||||||||||||||||||| |||||    |||||||| |||||||| |||  ||||||||    
T  26390360 gaatgtccttccggctaataatatgtcttatatggccttgtgtggtaaggaggacgaaaggggccatttgttctttcaatgcgatcattatggtc 26390454  T

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Target: chr8; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 34 - 115
Target Start/End: Original strand, 10801698 - 10801779
Alignment:
Q  34 atcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaa 115  Q
    |||||||||||||| | ||||| ||||| || || |||||||||||||||||||||||||||||||||||||||||||||||    
T  10801698 atcaatttttatggttgaaagcagttccgttgaaggttaacatttttgtttggcgtctctttctgaatagacttgctacaaa 10801779  T

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Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 174 - 238
Target Start/End: Original strand, 2959748 - 2959812
Alignment:
Q  174 tgtggtaaggaggaggaaagatatcatttgttttttcaatgtgatttttatggtcaattatggct 238  Q
    ||||||||||||||||| ||| | ||||| || ||||||||||||| ||||||||  ||||||||    
T  2959748 tgtggtaaggaggaggacagagaccatttattctttcaatgtgattattatggtcggttatggct 2959812  T

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Target: scaffold0003 (Bit Score: 103; Significance: 3e-51; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 34 - 244
Target Start/End: Original strand, 224744 - 224954
Alignment:
Q  34 atcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaaggacaaccttcgcaagag 133  Q
    ||||||||||||||||||| |||||||| ||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||  | || || ||    
T  224744 atcaatttttatggcttaaggcggttccgttaaaggttaacatttttgtttggcgtctttttctgaatagacttgctacaaaggacaatttgcgtaaaag 224843  T
Q  134 gaatgtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggaggaaagatatcatttgttttttcaatgtgatttttatggtcaatta 233  Q
    |||||||||| ||||||   ||   | |||||||||||||||||||||||||||||||||| | ||||| ||||| |||||||||  ||||||    |||    
T  224844 gaatgtccttgaggctaacaatgtatattgtgcggccttgtgtggtaaggaggaggaaagagaccatttatttttccaatgtgatcattatgggtggtta 224943  T
Q  234 tggctcttggt 244  Q
    |||||||||||    
T  224944 tggctcttggt 224954  T

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Target: scaffold0289 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0289
Description:

Target: scaffold0289; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 34 - 139
Target Start/End: Complemental strand, 11269 - 11164
Alignment:
Q  34 atcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaaggacaaccttcgcaagag 133  Q
    |||| ||||| ||||  |||| |||||| ||||| ||||| || ||||| ||  ||||||| |||||||||||| |||||||||| || || || |||||    
T  11269 atcattttttgtggcacaaagaggttccgttaaaggttaatatatttgtatgatgtctcttcctgaatagactttctacaaaggataatctgcggaagag 11170  T
Q  134 gaatgt 139  Q
     |||||    
T  11169 aaatgt 11164  T

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