View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14411_low_35 (Length: 263)
Name: NF14411_low_35
Description: NF14411
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14411_low_35 |
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Alignment Details
Target: chr3 (Bit Score: 237; Significance: 1e-131; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 13 - 249
Target Start/End: Complemental strand, 50813184 - 50812948
Alignment:
| Q |
13 |
aatatcggaaaaagtttgaatcatgttttatatgttacatatgcagatactaatcgcagttggggtaactgcgtacgaggcaaagcaactgcattgttca |
112 |
Q |
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| T |
50813184 |
aatatcggaaaaagtttgaatcatgttttatatgttacatatgcagatactaatcgcagttggggtaactgcgtacgaggcaaagcaactgcattgttca |
50813085 |
T |
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| Q |
113 |
cacagagaagagtgatagcttctgctggtgatcaagggaaagcatttacagttggcctgctaatcatctattgtgtctttggtgtactggccggtatagt |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50813084 |
cacagagaagagtgatagcttctgctggtgatcaagggaaagcatttacagttggcctgctaatcatctattgtgtctttggtgtactggccggtatagt |
50812985 |
T |
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| Q |
213 |
cggtggattgctgggactaggaggcggatttgttatg |
249 |
Q |
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| T |
50812984 |
cggtggattgctgggactaggaggcggatttgttatg |
50812948 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 13 - 249
Target Start/End: Original strand, 50862680 - 50862916
Alignment:
| Q |
13 |
aatatcggaaaaagtttgaatcatgttttatatgttacatatgcagatactaatcgcagttggggtaactgcgtacgaggcaaagcaactgcattgttca |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50862680 |
aatatcggaaaaagtttgaatcatgttttatatgttacatatgcagatactaatcgcagttggggtaactgcgtacgaggcaaagcaactgcattgttca |
50862779 |
T |
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| Q |
113 |
cacagagaagagtgatagcttctgctggtgatcaagggaaagcatttacagttggcctgctaatcatctattgtgtctttggtgtactggccggtatagt |
212 |
Q |
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| T |
50862780 |
cacagagaagagtgatagcttctgctggtgatcaagggaaagcatttacagttggcctgctaatcatctattgtgtctttggtgtactggccggtatagt |
50862879 |
T |
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| Q |
213 |
cggtggattgctgggactaggaggcggatttgttatg |
249 |
Q |
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| T |
50862880 |
cggtggattgctgggactaggaggcggatttgttatg |
50862916 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 154; E-Value: 9e-82
Query Start/End: Original strand, 44 - 249
Target Start/End: Original strand, 50749682 - 50749882
Alignment:
| Q |
44 |
atgttacatatgcagatactaatcgcagttggggtaactgcgtacgaggcaaagcaactgcattgttcacacagagaagagtgatagcttctgctggtga |
143 |
Q |
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||||||||||||||||| | |||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||| ||||||| |
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| T |
50749682 |
atgttacatatgcagatcccaatcgcagttggggtaactgcgtacgaggcaa-----ctgcattgttcacagggagaagagtgatagcttctactggtga |
50749776 |
T |
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| Q |
144 |
tcaagggaaagcatttacagttggcctgctaatcatctattgtgtctttggtgtactggccggtatagtcggtggattgctgggactaggaggcggattt |
243 |
Q |
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|||||||||||||||||||||||||| |||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50749777 |
tcaagggaaagcatttacagttggccagctagtcatctattgtgtctttggtgtgctggccggtatagtcggtggattgctgggactaggaggcggattt |
50749876 |
T |
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| Q |
244 |
gttatg |
249 |
Q |
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|||||| |
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| T |
50749877 |
gttatg |
50749882 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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