View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14411_low_37 (Length: 253)
Name: NF14411_low_37
Description: NF14411
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14411_low_37 |
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| [»] chr7 (1 HSPs) |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 15 - 253
Target Start/End: Complemental strand, 36606510 - 36606272
Alignment:
| Q |
15 |
cataggttaaggtcacatgataaatcattatcaatgagtatgactggtcaggtcatctcaaatcactacatgtggctagcattctccatgctcgtgttat |
114 |
Q |
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| T |
36606510 |
cataagttaaggtcacatgataaatcattattaatgagtatgactggtcaggtcatctcaaatcactacatgtggttagcattctccatgctcctgttat |
36606411 |
T |
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| Q |
115 |
atacctacttttgcttcatggccaaaatgatctctacaatacataccttcacattataagtgttttatatcaagcatggataatgtcatttgtaatcttt |
214 |
Q |
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| T |
36606410 |
atacctacttttgcttcatggccaaaatgatctatacaatacataccttcacattataagtgttttatatcaagcatggagaatgtcatttgtaatcttt |
36606311 |
T |
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| Q |
215 |
atgtcagtttattgcccaagcatggagaatgtcgccatc |
253 |
Q |
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| T |
36606310 |
atgtccgtttattgcccaagcttggagaatgtcgccatc |
36606272 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 97; Significance: 9e-48; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 77 - 253
Target Start/End: Original strand, 27539604 - 27539784
Alignment:
| Q |
77 |
tcactacatgtggctagcattctccatgctcgtgttatatacctacttttgcttcatggccaaaatgatctctacaatacataccttcacattataagtg |
176 |
Q |
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||||||||||||| |||||||| | |||||| || |||| ||||||||||||||| |||| ||||||||||| |||||||||||||||| ||||||| |
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| T |
27539604 |
tcactacatgtggttagcattcactatgctcttgctata--cctacttttgcttcacaaccaatatgatctctacgatacataccttcacatcataagtg |
27539701 |
T |
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| Q |
177 |
ttttat------atcaagcatggataatgtcatttgtaatctttatgtcagtttattgcccaagcatggagaatgtcgccatc |
253 |
Q |
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| T |
27539702 |
ttttataattatatcaagcatagataatgtcatttgtaatctttatgtcagtttattgcccaaacatggagaatgtcgccatc |
27539784 |
T |
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