View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14411_low_39 (Length: 247)
Name: NF14411_low_39
Description: NF14411
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14411_low_39 |
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Alignment Details
Target: chr2 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 12 - 227
Target Start/End: Complemental strand, 414636 - 414421
Alignment:
| Q |
12 |
atcatcaaccagtagtatgaaaaaagaagaaaaggagatgaaattgcaacatactaaagcaaatcatcaataagtgagcagtcaagaaatcgtctgactt |
111 |
Q |
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| T |
414636 |
atcataaaccagtagtatgaaacaagaagaaaaggagatgaaattgcaacatactaaagcaaatcatcaataagtgagcagtcaagaaatcgtctgactt |
414537 |
T |
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| Q |
112 |
tagatttggcatctttgactatttgagatatcttggtagactcattgtgcgctctaaccaatctttctttgcaatcagcttccttatcagttgcttcttt |
211 |
Q |
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| T |
414536 |
tagatttggcatctttgactatttgagatatcttggtagactcattgtgcgctctaaccaatctttctttgcaatcagcttccttatcagttgcttcttt |
414437 |
T |
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| Q |
212 |
caattcaagaaatatt |
227 |
Q |
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| T |
414436 |
caattcatgaaatatt |
414421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 73; Significance: 2e-33; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 44 - 200
Target Start/End: Original strand, 37211616 - 37211772
Alignment:
| Q |
44 |
aggagatgaaattgcaacatactaaagcaaatcatcaataagtgagcagtcaagaaatcgtctgactttagatttggcatctttgactatttgagatatc |
143 |
Q |
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| T |
37211616 |
aggagaagaaattacaacatactaaagcaaaccatcaattagtgagcaatcaacaaatcgtctgactttagatttgacatcttttactctttgagatgtt |
37211715 |
T |
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| Q |
144 |
ttggtagactcattgtgcgctctaaccaatctttctttgcaatcagcttccttatca |
200 |
Q |
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| T |
37211716 |
ttggtagactcatcctgcattctagtcaatctctctttccaatcagcctctttatca |
37211772 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 45 - 200
Target Start/End: Original strand, 37217299 - 37217454
Alignment:
| Q |
45 |
ggagatgaaattgcaacatactaaagcaaatcatcaataagtgagcagtcaagaaatcgtctgactttagatttggcatctttgactatttgagatatct |
144 |
Q |
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||||||||||||||||||||||||| ||||||||||| ||||||| | ||||||| ||||||||||||||||| ||||||||| | ||| || ||| |
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| T |
37217299 |
ggagatgaaattgcaacatactaaatcaaatcatcaaccagtgagccattaagaaattgtctgactttagatttgccatctttgattcttttgaatgtct |
37217398 |
T |
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| Q |
145 |
tggtagactcattgtgcgctctaaccaatctttctttgcaatcagcttccttatca |
200 |
Q |
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|||||||||||| ||| |||||||||||| | ||| |||||||| || |||||| |
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| T |
37217399 |
tggtagactcatcatgcattctaaccaatctctttttccaatcagcctctttatca |
37217454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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