View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14411_low_4 (Length: 618)
Name: NF14411_low_4
Description: NF14411
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14411_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 376; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 18 - 417
Target Start/End: Complemental strand, 19474714 - 19474315
Alignment:
| Q |
18 |
taatgagttgaaacaaagtttagggtatggtgttgttttgcataaagattttaaggaagtgagtttgttgggatttagtgatgtggttatggaagtgttg |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19474714 |
taatgagttgaaacaaagtttagggtatggtgttgttttgcataaagattttaaggaagtgagtttgttgggatttagtgatgtggttatggaagtgttg |
19474615 |
T |
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| Q |
118 |
atgttgagaggtaatgtgagtgagaagaggattataaagagaaggatgaagagtttgtgagatgaggaagccatgaaatgttgatgaaaaagttagggaa |
217 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19474614 |
gtgttgagaggtaatgtgagtgagaagaggattgtaaagagaaggatgaagagtttgtgagatgaggaagccatgaaatgttgatgaaaaagttagggaa |
19474515 |
T |
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| Q |
218 |
gaagttgagaatctaactttgtttaaataatgtactttaggtttagatagagacatttattagaatctaaaataacacgggtttggaacttaaataaatt |
317 |
Q |
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| T |
19474514 |
gaagttgagaatctaactttgtttaaataatgtactttaggtttcgatagagacatttattagaatctaaaataacacgggtttggaacttaaataaatt |
19474415 |
T |
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| Q |
318 |
actttttgaaaaggtcaataatatagcagcttgtaattttaaactttatatttctccctctagaggaaaagagttgcacctagtactttgaattttaacc |
417 |
Q |
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| T |
19474414 |
actttttgaaaaggtcaataatatagcagcttgtaattttaaactttatatttccccgtctagaggaaaagagttgcacctagtattttgaattttaacc |
19474315 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 130; E-Value: 5e-67
Query Start/End: Original strand, 443 - 612
Target Start/End: Complemental strand, 19474296 - 19474127
Alignment:
| Q |
443 |
tagatgttaaatgagtttaaatctcattccacttacctaaggattacaactttgcgacacgtctttggtaagctattggctttaccgacttatcgttctt |
542 |
Q |
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|||||||||||||||||||||||||||||||||||||| | ||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
19474296 |
tagatgttaaatgagtttaaatctcattccacttacctcataattgcaactttgcgacacgtctttggtaagctattggctttaccaacttatcgttctt |
19474197 |
T |
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| Q |
543 |
tcaaggggattatctttatgtttggctgcatcgtggcattgatggtcattctagatttctgatgatgtcc |
612 |
Q |
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|||||||||| |||||||||||||||||| |||||| |||||||||||||||||||||||| | |||||| |
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| T |
19474196 |
tcaaggggatgatctttatgtttggctgcgtcgtggtattgatggtcattctagatttctgtttatgtcc |
19474127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 548 - 588
Target Start/End: Original strand, 25785853 - 25785893
Alignment:
| Q |
548 |
gggattatctttatgtttggctgcatcgtggcattgatggt |
588 |
Q |
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||||| |||||||||||||||||| |||||| ||||||||| |
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| T |
25785853 |
gggatgatctttatgtttggctgcgtcgtggtattgatggt |
25785893 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 55; Significance: 3e-22; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 493 - 602
Target Start/End: Original strand, 3941511 - 3941621
Alignment:
| Q |
493 |
tttgcgacacgtctttggtaagctattggctttaccgacttatcgttctttcaaggggattatctttatgtttggctgc-atcgtggcattgatggtcat |
591 |
Q |
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|||||||| |||| |||| || |||||||||||||||||||||| ||||| ||| || ||||||||||||||||||||| | |||| |||||||| ||| |
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| T |
3941511 |
tttgcgactcgtccttggcaaactattggctttaccgacttatctttcttccaaaggaattatctttatgtttggctgcgtttgtggtattgatggccat |
3941610 |
T |
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| Q |
592 |
tctagatttct |
602 |
Q |
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||||||||||| |
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| T |
3941611 |
tctagatttct |
3941621 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 538 - 612
Target Start/End: Complemental strand, 33172855 - 33172781
Alignment:
| Q |
538 |
ttctttcaaggggattatctttatgtttggctgcatcgtggcattgatggtcattctagatttctgatgatgtcc |
612 |
Q |
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||||||||||||||| ||||||||||| |||| | ||||| |||||||| |||| |||||||||| | |||||| |
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| T |
33172855 |
ttctttcaaggggatgatctttatgttcggcttccgcgtggtattgatggccattttagatttctgtttatgtcc |
33172781 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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