View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14411_low_40 (Length: 244)
Name: NF14411_low_40
Description: NF14411
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14411_low_40 |
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Alignment Details
Target: chr7 (Bit Score: 121; Significance: 4e-62; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 1 - 125
Target Start/End: Complemental strand, 29733922 - 29733798
Alignment:
| Q |
1 |
caacaacaacatttaagtatgaaaatgtcactgatattcctgccaccgtagactggaggaaacgtggagcagttactccaatcaagaatcaaggaaaatg |
100 |
Q |
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| T |
29733922 |
caacaacaacatttaagtatgaaaatgtcactgatattcctgccaccgtagactggaggaaacgtggagcagttactccaatcaagaatcaaggaaaatg |
29733823 |
T |
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| Q |
101 |
tggtaatgtaaaggacactacttac |
125 |
Q |
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| T |
29733822 |
tggtaatgtaaaggacaccacttac |
29733798 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 11 - 119
Target Start/End: Complemental strand, 30056989 - 30056881
Alignment:
| Q |
11 |
atttaagtatgaaaatgtcactgatattcctgccaccgtagactggaggaaacgtggagcagttactccaatcaagaatcaaggaaaatgtggtaatgta |
110 |
Q |
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| T |
30056989 |
atttaagtataaaaatatcactgatattcctgctgccgtagactggaggaaacgtggagcagttactccagtcaagaatcaaagagaatgtggtaacata |
30056890 |
T |
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| Q |
111 |
aaggacact |
119 |
Q |
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|| |||||| |
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| T |
30056889 |
aaagacact |
30056881 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 175 - 229
Target Start/End: Complemental strand, 29733718 - 29733664
Alignment:
| Q |
175 |
gtaacaacaataacaggtagttgctgggcattttctgctgtggctgcgatagaag |
229 |
Q |
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| T |
29733718 |
gtaacaacaataacaggtagttgctgggcattttctgctgtggctgcgatagaag |
29733664 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 22 - 106
Target Start/End: Complemental strand, 29606855 - 29606771
Alignment:
| Q |
22 |
aaaatgtcactgatattcctgccaccgtagactggaggaaacgtggagcagttactccaatcaagaatcaaggaaaatgtggtaa |
106 |
Q |
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| T |
29606855 |
aaaatatcactgatattcctaccgccgtagactggaggaaacgtagagcagttactccagtcaagaatcaaagaggatgtggtaa |
29606771 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 22 - 106
Target Start/End: Original strand, 29746313 - 29746397
Alignment:
| Q |
22 |
aaaatgtcactgatattcctgccaccgtagactggaggaaacgtggagcagttactccaatcaagaatcaaggaaaatgtggtaa |
106 |
Q |
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||||| |||||||||||||| ||| |||| |||||||||||||| |||||||||||||| ||||||||||| || ||||||||| |
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| T |
29746313 |
aaaatatcactgatattcctaccaacgtatactggaggaaacgtagagcagttactccagtcaagaatcaaagaggatgtggtaa |
29746397 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 175 - 217
Target Start/End: Complemental strand, 30056782 - 30056740
Alignment:
| Q |
175 |
gtaacaacaataacaggtagttgctgggcattttctgctgtgg |
217 |
Q |
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||||||| ||| ||||||||||||||||||||||||||||||| |
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| T |
30056782 |
gtaacaataattacaggtagttgctgggcattttctgctgtgg |
30056740 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 40
Target Start/End: Complemental strand, 31194940 - 31194903
Alignment:
| Q |
3 |
acaacaacatttaagtatgaaaatgtcactgatattcc |
40 |
Q |
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|||||| |||||||||||||||||||||||| |||||| |
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| T |
31194940 |
acaacatcatttaagtatgaaaatgtcactgctattcc |
31194903 |
T |
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