View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14411_low_45 (Length: 230)
Name: NF14411_low_45
Description: NF14411
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14411_low_45 |
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Alignment Details
Target: chr2 (Bit Score: 189; Significance: 1e-102; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 5 - 215
Target Start/End: Original strand, 38580446 - 38580653
Alignment:
| Q |
5 |
acatgttcatgcatgttgacctcactcccaaacttttacgtaccacacacacctcatcactcttgtgtaatgtttgtgaatgaatcaccaactatatata |
104 |
Q |
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| T |
38580446 |
acatgttcatgcatg---acctcactcccaaacttttacgtaccacacacacctcatcactcttgtgtaatgtttgcgaatgaatcaccaactatatata |
38580542 |
T |
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| Q |
105 |
tctactaaatcatataaatgttacaagcacttgtataaataaataaacatttcaccttatcataaccttctcaccacaattctaaatcccaatcaacttt |
204 |
Q |
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| T |
38580543 |
tctactaaatcatataaatgttacaagcacttgtataaataaataaacatttcaccttatcataacctgctcaccacaattctaaatcccaatcaacttt |
38580642 |
T |
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| Q |
205 |
aggttatttgt |
215 |
Q |
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| T |
38580643 |
aggttatttgt |
38580653 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 48 - 214
Target Start/End: Original strand, 38561276 - 38561436
Alignment:
| Q |
48 |
cacacacacctcatcactcttgtgtaatgtttgtgaatgaatcaccaactatatatatctactaaat--catataa-atgttacaagcacttgtataaat |
144 |
Q |
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| T |
38561276 |
cacacacacctcatcattcttatgtaatatttgtgaatgaaccagc---------tatctactaaatatcatatcatatgttacaagcatttatataaat |
38561366 |
T |
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| Q |
145 |
aaataaacatttcaccttatcataaccttctcaccacaattctaaatcccaatcaactttaggttatttg |
214 |
Q |
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| T |
38561367 |
aaataaacatttcaccttatcataaccttctcactacaattctaaatcccaatcaactttaggttatttg |
38561436 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 41 - 88
Target Start/End: Original strand, 38605759 - 38605806
Alignment:
| Q |
41 |
tacgtaccacacacacctcatcactcttgtgtaatgtttgtgaatgaa |
88 |
Q |
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| T |
38605759 |
tacgtatcacacacacctcatcactcttatggaatatttgtgaatgaa |
38605806 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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