View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14411_low_6 (Length: 539)
Name: NF14411_low_6
Description: NF14411
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14411_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 438; Significance: 0; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 438; E-Value: 0
Query Start/End: Original strand, 6 - 479
Target Start/End: Complemental strand, 22624913 - 22624440
Alignment:
| Q |
6 |
tgagatatgcatattgttccaggattttggtcgctgtattttgagtgaaaagttgatgtaacaattaatagagatgtgcatctcatgcctctttgtggcc |
105 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
22624913 |
tgagatatgcatattgttccaggattttggtcgctgtattttgagtgaaaagttgatgtaacaattaatagagatgtgcatctcacgcctctttgtggca |
22624814 |
T |
|
| Q |
106 |
gcaattacatttgtttagtttgctaagttttggtgattaagtttctttcaacttaataagcataagaatgtgttttgataaagttgagtggttttggtgt |
205 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
22624813 |
gcaattacatttgtttagtttgctaagttttggtgattaagtttctttcaacttaataagcataaggatgtgttttgataaagttgagtggttttggtgt |
22624714 |
T |
|
| Q |
206 |
tataactctcttttgttaggcacattgtaaatgtgtaatttggttctgtaaactataattatgctgtaatattttaatatatttttgttacagactatat |
305 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22624713 |
tataactctcttttgttaggcacattgtaaatgtgtaatttggttctgtaaactataattatgctgtaatattttaatatatttttgttacagactatat |
22624614 |
T |
|
| Q |
306 |
aaagaaaaaccatcaattctcctgaaaaaacatattatttttggccaagagcactactacctgatatttatattaaatgttgaggtggtcttgctatttg |
405 |
Q |
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|
|||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22624613 |
aaagaaaaaccatcaattctcctgaaaaaaaatattatttttggcctagagcactactacctgatatttatattaaatgttgaggtggtcttgctatttg |
22624514 |
T |
|
| Q |
406 |
ggctttcttctgtgtgaaagatcgtattatcaatacctgctttatgttttgcagggagtgaatatagttacctc |
479 |
Q |
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|||||||||| |||||| || | ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22624513 |
ggctttcttccgtgtgacagtttgtattatcaatacctgctttatgttttgcagggagtgaatatagttacctc |
22624440 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 115 - 250
Target Start/End: Original strand, 32286188 - 32286324
Alignment:
| Q |
115 |
tttgtttagtttgctaagttttggtgattaagtttctttcaacttaataagcataagaat--gtgttttgataaagtt--gagtggttttggtgttataa |
210 |
Q |
| |
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||||||| |||| | |||||| |||||| |||||||||||||||||| |||||||||| |||||||||| ||||| ||||||||||||||||||| |
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| T |
32286188 |
tttgttttgtttacgaagtttaggtgatcaagtttctttcaacttaa---gcataagaatatgtgttttgatcaagttttgagtggttttggtgttatat |
32286284 |
T |
|
| Q |
211 |
ctctcttttgttaggcacattgtaaatgtgtaatttggtt |
250 |
Q |
| |
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|||||||||||| ||||||||||||| ||||||||||||| |
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| T |
32286285 |
ctctcttttgtttggcacattgtaaaggtgtaatttggtt |
32286324 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 249 - 306
Target Start/End: Original strand, 32286353 - 32286410
Alignment:
| Q |
249 |
ttctgtaaactataattatgctgtaatattttaatatatttttgttacagactatata |
306 |
Q |
| |
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||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||| |
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|
| T |
32286353 |
ttctgtaaactataattatgctgaaatattttaatatatttttgttacaaactatata |
32286410 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 252 - 312
Target Start/End: Original strand, 26128426 - 26128486
Alignment:
| Q |
252 |
tgtaaactataattatgctgtaatattttaatatatttttgttacagactatataaagaaa |
312 |
Q |
| |
|
||||||||||| ||||| || |||||||||||||||| |||||||| ||||||| |||||| |
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|
| T |
26128426 |
tgtaaactatagttatgttgaaatattttaatatattattgttacaaactatatcaagaaa |
26128486 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 6 - 83
Target Start/End: Original strand, 32285984 - 32286061
Alignment:
| Q |
6 |
tgagatatgcatattgttccaggattttggtcgctgtattttgagtgaaaagttgatgtaacaattaatagagatgtg |
83 |
Q |
| |
|
|||||||||||||||||| ||||||||| ||||||||||||||| |||||||||| | || | |||||||||| |
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|
| T |
32285984 |
tgagatatgcatattgttttcggattttggctgctgtattttgagtggggagttgatgtatccatcagtagagatgtg |
32286061 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 44; Significance: 8e-16; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 252 - 335
Target Start/End: Complemental strand, 46673643 - 46673560
Alignment:
| Q |
252 |
tgtaaactataattatgctgtaatattttaatatatttttgttacagactatataaagaaaaaccatcaattctcctgaaaaaa |
335 |
Q |
| |
|
||||||||||| |||||||| |||||| ||||| ||| | ||||| ||||||||||||| |||||||||||||||| |||||| |
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|
| T |
46673643 |
tgtaaactatagttatgctgaaatattctaatacattaattttacaaactatataaagaacaaccatcaattctcctaaaaaaa |
46673560 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 252 - 312
Target Start/End: Original strand, 51655972 - 51656032
Alignment:
| Q |
252 |
tgtaaactataattatgctgtaatattttaatatatttttgttacagactatataaagaaa |
312 |
Q |
| |
|
||||||||||| |||||||| |||||||||||||||| |||||||| ||||||| |||||| |
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|
| T |
51655972 |
tgtaaactatagttatgctgaaatattttaatatattattgttacaaactatatcaagaaa |
51656032 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 173 - 254
Target Start/End: Complemental strand, 46622224 - 46622143
Alignment:
| Q |
173 |
atgtgttttgataaagtt--gagtggttttggtgttataactctcttttgttaggcacattgtaaatgtgtaatttggttctgt |
254 |
Q |
| |
|
|||||||||||||||||| || |||||||| ||||||| ||||||||||| | ||||||||||| || |||||||||||||| |
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| T |
46622224 |
atgtgttttgataaagttttgattggttttgctgttata--tctcttttgtttgccacattgtaaaggtctaatttggttctgt |
46622143 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 252 - 312
Target Start/End: Original strand, 34340564 - 34340624
Alignment:
| Q |
252 |
tgtaaactataattatgctgtaatattttaatatatttttgttacagactatataaagaaa |
312 |
Q |
| |
|
||||||||||| ||||| | |||||||||||||||| |||||||| ||||||| |||||| |
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|
| T |
34340564 |
tgtaaactatagttatgttaaaatattttaatatattattgttacaaactatatcaagaaa |
34340624 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 252 - 312
Target Start/End: Original strand, 23102525 - 23102585
Alignment:
| Q |
252 |
tgtaaactataattatgctgtaatattttaatatatttttgttacagactatataaagaaa |
312 |
Q |
| |
|
||||||||||| ||||| || |||||||||||||||| |||||||| ||||||| |||||| |
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|
| T |
23102525 |
tgtaaactatagttatgttgaaatattttaatatattattgttacaaactatatcaagaaa |
23102585 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 252 - 312
Target Start/End: Complemental strand, 27060334 - 27060274
Alignment:
| Q |
252 |
tgtaaactataattatgctgtaatattttaatatatttttgttacagactatataaagaaa |
312 |
Q |
| |
|
||||||||||| ||||| || |||||||||||||||| |||||||| ||||||| |||||| |
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|
| T |
27060334 |
tgtaaactatagttatgttgaaatattttaatatattattgttacaaactatatcaagaaa |
27060274 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 252 - 312
Target Start/End: Original strand, 6720676 - 6720736
Alignment:
| Q |
252 |
tgtaaactataattatgctgtaatattttaatatatttttgttacagactatataaagaaa |
312 |
Q |
| |
|
||||||||||| ||||| || |||||||||||||||| |||||||| ||||||| |||||| |
|
|
| T |
6720676 |
tgtaaactatagttatgttgaaatattttaatatattattgttacaaactatatcaagaaa |
6720736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 259 - 334
Target Start/End: Original strand, 37608532 - 37608607
Alignment:
| Q |
259 |
tataattatgctgtaatattttaatatatttttgttacagactatataaagaaaaaccatcaattctcctgaaaaa |
334 |
Q |
| |
|
|||| |||||||| |||||| ||||| ||| | |||| ||||||||||||| |||||||||||||||| ||||| |
|
|
| T |
37608532 |
tatagttatgctgaaatattctaatacattaattttactaactatataaagaacaaccatcaattctcctaaaaaa |
37608607 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 259 - 334
Target Start/End: Complemental strand, 8632585 - 8632510
Alignment:
| Q |
259 |
tataattatgctgtaatattttaatatatttttgttacagactatataaagaaaaaccatcaattctcctgaaaaa |
334 |
Q |
| |
|
|||| |||||||| |||||| ||||| ||| | |||| ||||||||||||| |||||||||||||||| ||||| |
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|
| T |
8632585 |
tatagttatgctgaaatattctaatacattaattttactaactatataaagaacaaccatcaattctcctaaaaaa |
8632510 |
T |
|
Back To:
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