View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14411_low_7 (Length: 513)
Name: NF14411_low_7
Description: NF14411
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14411_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 436; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 436; E-Value: 0
Query Start/End: Original strand, 5 - 496
Target Start/End: Original strand, 16757911 - 16758402
Alignment:
| Q |
5 |
atgtacatgaagagacatgaaccatacggagaaaagaggacaatgacgatggaatttagaaaatgcatcgactctgctaaatgaaatatgaggacacaag |
104 |
Q |
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| T |
16757911 |
atgttcatgaagagacatgaacaatatggagaaaagaggacaatgacgatggaatttagaaaatacatcgactctgctaaatgaaatatgaggacacaag |
16758010 |
T |
|
| Q |
105 |
gtaataggttagttagttgattcatgaaagagtatgccaaaaattgatctagaacttggtttgccactgagtcatctgaacatcaatgcatcaaaggaga |
204 |
Q |
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| T |
16758011 |
gtaataggttagttagttgattcatgcaagagtatgccaaaaattgatctagaacttggtttgccaccgagtcatctgaacatcaatgcatcaaaggaga |
16758110 |
T |
|
| Q |
205 |
actcatacgagtattattgggttcccaagtcccacatggagtagtataagttgttcggttgagcgtgaacatgttaaatgtgccaataacaatgctatga |
304 |
Q |
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| T |
16758111 |
actcatacgagtattatggggttcccaagtcccacatggagtagtataagttgtttggttgagcattaacatgttaaatgtgccaataacaatgctatga |
16758210 |
T |
|
| Q |
305 |
tttggatgaaatggcattgtgttcacttatctattgaaggttttattctttatactttgtctcttattaagtttgcaatttacggtgctaaatctgctgt |
404 |
Q |
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| T |
16758211 |
tttggatgaaatggcactgtgttcacttgtctattgaaggttttattctttatactttgtctcttattaagtttgcaatttacggtgctaaatctgctgt |
16758310 |
T |
|
| Q |
405 |
ctcacacgtagtcctcagggagtttaagacatgcatccttcttctaggaaactattatctctttggatccaatctcagtacaaccagtatat |
496 |
Q |
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| T |
16758311 |
ctcacacgtagtcctcagggagtttaagacatgcatccttcatctaggaaactattatctctttggatcgaatctcagtacaaccagtatat |
16758402 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 337 - 490
Target Start/End: Original strand, 16753409 - 16753562
Alignment:
| Q |
337 |
attgaaggttttattctttatactttgtctcttattaagtttgcaatttacggtgctaaatctgctgtctcacacgtagtcctcagggagtttaagacat |
436 |
Q |
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|||||| ||||||||||||||||| ||||||| ||| | ||||||||||| | |||||||||||||||| || ||||||||||||||||||||||||| |
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| T |
16753409 |
attgaacgttttattctttatactctgtctctcattgactttgcaatttagagcgctaaatctgctgtcttgcatgtagtcctcagggagtttaagacat |
16753508 |
T |
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| Q |
437 |
gcatccttcttctaggaaactattatctctttggatccaatctcagtacaacca |
490 |
Q |
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| T |
16753509 |
gcgttctgctttgaggaaactattatctctttggatccaatctcagtataacca |
16753562 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 378 - 478
Target Start/End: Original strand, 16745350 - 16745450
Alignment:
| Q |
378 |
tgcaatttacggtgctaaatctgctgtctcacacgtagtcctcagggagtttaagacatgcatccttcttctaggaaactattatctctttggatccaat |
477 |
Q |
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|||||||||| |||||| ||||||||| || ||||| ||||| || ||||||||||||||||||| |||||||||||||||| |||||||||||| ||| |
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| T |
16745350 |
tgcaatttacagtgctacatctgctgtttcgcacgttgtccttgggcagtttaagacatgcatcctgcttctaggaaactattttctctttggatctaat |
16745449 |
T |
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| Q |
478 |
c |
478 |
Q |
| |
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| |
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| T |
16745450 |
c |
16745450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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