View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14411_low_8 (Length: 507)
Name: NF14411_low_8
Description: NF14411
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14411_low_8 |
 | |
|
| [»] scaffold0010 (1 HSPs) |
| | |
|
| [»] scaffold0179 (1 HSPs) |
| | |
|
Alignment Details
Target: chr2 (Bit Score: 392; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 17 - 503
Target Start/End: Complemental strand, 7313358 - 7312854
Alignment:
| Q |
17 |
cataatatatattcaattggcgaattaatttagttactgttgttaattcctttgttgtggaagctgcaattgaaatatgcttttaattaggcgaacagat |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||| ||| ||||||||||||||||||||| || ||||||||||||||||||||||||||||| |
|
|
| T |
7313358 |
cataatatatattcaattggcgaattaatttagttattgttattacttcctttgttgtggaagctgcgatcgaaatatgcttttaattaggcgaacagat |
7313259 |
T |
|
| Q |
117 |
acccctcttggttcgttaggaaatagctatgtaaaatagactaatataggctataccacgaagaaag------------aaagcatgggtataggatgct |
204 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
7313258 |
acccctcttggttcgttaggaaatagctatgtaaaatagactaatataggctataccacgaagaaaggttagaataaagaaagcatgggtataggatgct |
7313159 |
T |
|
| Q |
205 |
attgatagacaagttaaagggcgaaaaagtttggaggtggaatcaagatgacaagccaggacgactgatagtatcgatatgctgattttaaggcgttaat |
304 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||| ||||| |
|
|
| T |
7313158 |
attgatagacaagttaaagggcgaaaaagtttggaggtggaatcaagatgacaagccaagacgactgatagcatcgatatgctgattttaaggcattaat |
7313059 |
T |
|
| Q |
305 |
gtatcaactcattttggctgctacagaaactaaaagagcatggtatg-atcgac-----ttcactgtaagttttaatctttcatacttttgaaatcatcc |
398 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||| || ||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
7313058 |
gtatcaactcattttggctgctacagaaactaaaagagcatggtatgtatcaactcattttcactgtaagttttaatctttcatacatttgaaatcatcc |
7312959 |
T |
|
| Q |
399 |
ataaggaatcaggtacatattttaaaactgcacaaaagtcatgaacttttaagattgtgttgagttccctagaaacatagtatggtgtaattgaaagtat |
498 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
7312958 |
ataaggaatcaggtacatattttaaaactgcacaaaagtcatgaacttttaagattgtgttgagttgcctagaaacatagtatggtgtaattgaaagtat |
7312859 |
T |
|
| Q |
499 |
aatct |
503 |
Q |
| |
|
||||| |
|
|
| T |
7312858 |
aatct |
7312854 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 380; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 21 - 503
Target Start/End: Complemental strand, 11135871 - 11135375
Alignment:
| Q |
21 |
atatatattcaattggcgaattaatttagttactgttgttaattcctttgttgtggaagctgcaattgaaatatgcttttaattaggcgaacagataccc |
120 |
Q |
| |
|
||||| |||||||||||||||||||||||||| |||| ||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||| |
|
|
| T |
11135871 |
atatacattcaattggcgaattaatttagttattgttattaattcctttgttgtggaagctgcgatcgaaatatgcttttaattaggcgaacagataccc |
11135772 |
T |
|
| Q |
121 |
ctcttggttcgttaggaaatagctatgtaaaatagactaatataggctataccacgaagaaag------------aaagcatgggtataggatgctattg |
208 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
11135771 |
ctcttggttcgttaggaaatagctatgtaaaatagactaatataggctataccacgaagaaaggttagaataaagaaagcatgggtataggatgctattg |
11135672 |
T |
|
| Q |
209 |
atagacaagttaaagggcgaaaaagtttggaggtggaatcaagatgacaagccaggacgactgatagtatcgatatgctgattttaaggcgttaa-tgta |
307 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||| ||||||||||||||||| || | |
|
|
| T |
11135671 |
atagacaagttaaagggcgaaaaagtttggaggtggaatcaagatgacaaggcaggacaactgatagtatcgatatgttgattttaaggcgttaaatgca |
11135572 |
T |
|
| Q |
308 |
tcaa-ctcattttggctgctacagaaactaaaagagcatggtatgatcgacttcactgtaagttttaatctttcatacttttgaaatcatccataaggaa |
406 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
11135571 |
tcaaactcattttggctgctacagaaactaaaagagcatggtatgatcgacgtcacggtaagttttaatcttttatacttttgaaatcatccataaggag |
11135472 |
T |
|
| Q |
407 |
tcaggtacatattttaaaactgcacaaaagtcatgaacttttaagattgtgttgagttccctagaaacatagtatggtgtaattgaaagtataatct |
503 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11135471 |
tcaggtacatattttaaaactgcacaaaagtcatgaacttttaagattgcgttgagttgcctagaaacatagtatggtgtaattgaaagtataatct |
11135375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 331; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 65 - 503
Target Start/End: Original strand, 21936190 - 21936641
Alignment:
| Q |
65 |
cctttgttgtggaagctgcaattgaaatatgcttttaattaggcgaacagatacccctcttggttcgttaggaaatagctatgtaaaatagactaatata |
164 |
Q |
| |
|
||||||||||||||||||| || || ||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
21936190 |
cctttgttgtggaagctgcgatcgagatatgttttcaattaggcgaacagatacccctcttggttcgttaggaaatagctatgtaaaatagaccaatata |
21936289 |
T |
|
| Q |
165 |
ggctataccacgaagaaag------------aaagcatgggtataggatgctattgatagacaagttaaagggcgaaaaagtttggaggtggaatcaaga |
252 |
Q |
| |
|
|||| |||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
21936290 |
ggctgtaccacgaagaaaggttagaataaagaaagcatgggtataggatgctattgataaacaagttaaagggcgaaaaagtttggaggaggaatcaaga |
21936389 |
T |
|
| Q |
253 |
tgacaagccaggacgactgatagtatcgatatgctgattttaaggcgttaatgtatcaactcattttggctgctacagaaactaaaagagcatggtatga |
352 |
Q |
| |
|
|||||||||||| |||||||||| ||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21936390 |
tgacaagccagggcgactgatagcatcgatatgctgattttaaggcgttgacgtatcaactcattttggctgctacagaaactaaaagagcatggtatga |
21936489 |
T |
|
| Q |
353 |
tcgacttcactgtaagttttaatctttcatacttttgaaatcatccataaggaatcaggtacatattttaaaactgcacaaaagtcatgaacttttaaga |
452 |
Q |
| |
|
|||||||||| ||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21936490 |
tcgacttcaccgtaagttttaaactttcatacatttgaaatcatccataaggaatcaggtacatattttaaaactgcacaaaagtcatgaacttttaaga |
21936589 |
T |
|
| Q |
453 |
ttgtgttgag-ttccctagaaacatagtatggtgtaattgaaagtataatct |
503 |
Q |
| |
|
||| |||||| || |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21936590 |
ttgcgttgagtttgcctagaaacatagtatggtgtaattgaaagtataatct |
21936641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 180 - 496
Target Start/End: Original strand, 36599531 - 36599848
Alignment:
| Q |
180 |
aaagaaagcatgggtataggatgctattgatagacaagttaaagggcgaaaaagtttggaggtggaatcaagatgacaagccaggacgactgatagtatc |
279 |
Q |
| |
|
|||||||||||| |||||||||||||||| || ||||||||||||| ||||||||||||||| |||||||||||||||||||||| | |||||||| ||| |
|
|
| T |
36599531 |
aaagaaagcatgagtataggatgctattggtaaacaagttaaagggtgaaaaagtttggaggaggaatcaagatgacaagccagggctactgatagcatc |
36599630 |
T |
|
| Q |
280 |
gatatgctgattttaaggcgttaatgtatcaactcattttggctgctacagaaactaaaagagcatggtatgatcgacttcactgtaagttttaatcttt |
379 |
Q |
| |
|
|||||||||||||||||||| | | ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||| |
|
|
| T |
36599631 |
gatatgctgattttaaggcgatgacatatcaactcattttggctgctacagaaactaaaagagcatggtgtgatcgacttcactgtaagttttaaacttt |
36599730 |
T |
|
| Q |
380 |
catacttttgaaatcatccataaggaatcaggtacatattttaaaactgcacaaaagtcatgaacttttaagattgtgttgag-ttccctagaaacatag |
478 |
Q |
| |
|
||||| |||| ||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||| ||||||| || ||||||||||| |
|
|
| T |
36599731 |
catacctttggaatcatccataagaaatcaggtacatattttaaaactgcagaaaagtcatgaacttttaagatgatgttgagtttgtctagaaacatat |
36599830 |
T |
|
| Q |
479 |
tatggtgtaattgaaagt |
496 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
36599831 |
tatggtgtaattgaaagt |
36599848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 21 - 136
Target Start/End: Original strand, 36598740 - 36598856
Alignment:
| Q |
21 |
atatatattcaattggcgaattaatttagttactgttg-ttaattcctttgttgtggaagctgcaattgaaatatgcttttaattaggcgaacagatacc |
119 |
Q |
| |
|
||||||||| |||||| ||||||||| | ||| |||| |||||||||||||||| |||||| | || || ||||| ||| ||| ||||||||||||||| |
|
|
| T |
36598740 |
atatatatttaattggtgaattaattaatttattgtttattaattcctttgttgtagaagctacgatcgagatatgttttcaatcaggcgaacagatacc |
36598839 |
T |
|
| Q |
120 |
cctcttggttcgttagg |
136 |
Q |
| |
|
||||||||||| ||||| |
|
|
| T |
36598840 |
cctcttggttcattagg |
36598856 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0010 (Bit Score: 330; Significance: 0; HSPs: 1)
Name: scaffold0010
Description:
Target: scaffold0010; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 17 - 501
Target Start/End: Original strand, 246736 - 247234
Alignment:
| Q |
17 |
cataatatatattcaattggcgaattaatttagttactgttg-ttaattcctttgttgtggaagctgcaattgaaatatgcttttaattaggcgaacaga |
115 |
Q |
| |
|
||||||||||||| |||||| |||||||||| ||| |||| ||||||||||||||||||||||||| || |||||||| ||| ||||||||||||||| |
|
|
| T |
246736 |
cataatatatatttaattggtgaattaatttgtttattgtttattaattcctttgttgtggaagctgcgatcgaaatatgatttaaattaggcgaacaga |
246835 |
T |
|
| Q |
116 |
tacccctcttggttcgttaggaaatagctatgtaaaatagactaatataggctataccacgaagaaag------------aaagcatgggtataggatgc |
203 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||| | |||||||||||||| |||||||||||||||||||| |
|
|
| T |
246836 |
tacccctcttggttcgttaggaaatagctatgtaaaatagaacaatataggttgtaccacgaagaaaggttagaataaagaaagcatgggtataggatgc |
246935 |
T |
|
| Q |
204 |
tattgatagacaagttaaagggcgaaaaagtttggaggtggaatcaagatgacaagccaggacgactgatagtatcgatatgctgattttaaggcgttaa |
303 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| ||| ||||| |||| |||||||| |||||||||||||||| | |
|
|
| T |
246936 |
tattgataaacaagttaaagggcgaaaaagtttggaggaggaatcaagatgacaagctagggcgactaatagcatcgatatactgattttaaggcgttga |
247035 |
T |
|
| Q |
304 |
tgtatcaactcattttggctgctacagaaactaaaagagcatggtatgatcgacttcactgtaagttttaatctttcatacttttgaaatcatccataag |
403 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||| |||||||||||||||||| |
|
|
| T |
247036 |
cgtatcaactcattttgactgctacagaaactaaaagagcatggtatgatcgacttcaccgtaagttttaaactttcatacctttgaaatcatccataag |
247135 |
T |
|
| Q |
404 |
gaatcaggtacatattttaaaactgcacaaaagtcatgaacttttaagattgtgttgag-ttccctagaaacatagtatggtgtaattgaaagtataat |
501 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||| |
|
|
| T |
247136 |
gaatcaggtacatattttaaaactgcacaaaagtcatgaacttttaagattgtgttgagtttgcctagaaacatagtatggtgtaattgaaagtataat |
247234 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 330; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 17 - 501
Target Start/End: Complemental strand, 37281462 - 37280964
Alignment:
| Q |
17 |
cataatatatattcaattggcgaattaatttagttactgttg-ttaattcctttgttgtggaagctgcaattgaaatatgcttttaattaggcgaacaga |
115 |
Q |
| |
|
||||||||||||| |||||| |||||||||| ||| |||| ||||||||||||||||||||||||| || || ||||| ||| ||||||||||||||| |
|
|
| T |
37281462 |
cataatatatatttaattggtgaattaatttgtttattgtttattaattcctttgttgtggaagctgcgatcgagatatgttttcaattaggcgaacaga |
37281363 |
T |
|
| Q |
116 |
tacccctcttggttcgttaggaaatagctatgtaaaatagactaatataggctataccacgaagaaag------------aaagcatgggtataggatgc |
203 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||| | |||||||||||||| |||||||||||||||||||| |
|
|
| T |
37281362 |
tacccctcttggttcgttaggaaatagctatgtaaaatagaccaatataggttgtaccacgaagaaaggttagaataaagaaagcatgggtataggatgc |
37281263 |
T |
|
| Q |
204 |
tattgatagacaagttaaagggcgaaaaagtttggaggtggaatcaagatgacaagccaggacgactgatagtatcgatatgctgattttaaggcgttaa |
303 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| ||| ||||| |||| |||||||| |||||||||||||||| | |
|
|
| T |
37281262 |
tattgataaacaagttaaagggcgaaaaagtttggaggaggaatcaagatgacaagctagggcgactaatagcatcgatatactgattttaaggcgttga |
37281163 |
T |
|
| Q |
304 |
tgtatcaactcattttggctgctacagaaactaaaagagcatggtatgatcgacttcactgtaagttttaatctttcatacttttgaaatcatccataag |
403 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||| |||||||||||||||||| |
|
|
| T |
37281162 |
cgtatcaactcattttgactgctacagaaactaaaagagcatggtatgatcgacttcaccgtaagttttaaactttcatacctttgaaatcatccataag |
37281063 |
T |
|
| Q |
404 |
gaatcaggtacatattttaaaactgcacaaaagtcatgaacttttaagattgtgttgag-ttccctagaaacatagtatggtgtaattgaaagtataat |
501 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||| |
|
|
| T |
37281062 |
gaatcaggtacatattttaaaactgcacaaaagtcatgaacttttaagattgtgttgagtttgcctagaaacatagtatggtgtaattgaaagtataat |
37280964 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 180 - 363
Target Start/End: Original strand, 11099166 - 11099349
Alignment:
| Q |
180 |
aaagaaagcatgggtataggatgctattgatagacaagttaaagggcgaaaaagtttggaggtggaatcaagatgacaagccaggacgactgatagtatc |
279 |
Q |
| |
|
|||||||||||| ||| |||||||||||| || ||||||||||||| ||||||||||||||| |||||||||||||||||||||| | |||||||| ||| |
|
|
| T |
11099166 |
aaagaaagcatgagtacaggatgctattggtaaacaagttaaagggtgaaaaagtttggaggaggaatcaagatgacaagccagggctactgatagcatc |
11099265 |
T |
|
| Q |
280 |
gatatgctgattttaaggcgttaatgtatcaactcattttggctgctacagaaactaaaagagcatggtatgatcgacttcact |
363 |
Q |
| |
|
||||||||||||||||||| | | ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
11099266 |
aatatgctgattttaaggcgatgacatatcaactcattttggctgctacagaaactaaaagagcatggtgtgatcgacttcact |
11099349 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 124; Significance: 1e-63; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 180 - 363
Target Start/End: Complemental strand, 17998163 - 17997980
Alignment:
| Q |
180 |
aaagaaagcatgggtataggatgctattgatagacaagttaaagggcgaaaaagtttggaggtggaatcaagatgacaagccaggacgactgatagtatc |
279 |
Q |
| |
|
|||||||||||| ||| |||||||||||| || ||||||||||||| ||||||||||||||| |||||||||||||||||||||| | |||||||| ||| |
|
|
| T |
17998163 |
aaagaaagcatgagtacaggatgctattggtaaacaagttaaagggtgaaaaagtttggaggaggaatcaagatgacaagccagggctactgatagcatc |
17998064 |
T |
|
| Q |
280 |
gatatgctgattttaaggcgttaatgtatcaactcattttggctgctacagaaactaaaagagcatggtatgatcgacttcact |
363 |
Q |
| |
|
||||||||||||||||||| | | ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
17998063 |
aatatgctgattttaaggcgatgacatatcaactcattttggctgctacagaaactaaaagagcatggtgtgatcgacttcact |
17997980 |
T |
|
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Target: scaffold0179 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: scaffold0179
Description:
Target: scaffold0179; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 21 - 136
Target Start/End: Original strand, 25226 - 25342
Alignment:
| Q |
21 |
atatatattcaattggcgaattaatttagttactgttg-ttaattcctttgttgtggaagctgcaattgaaatatgcttttaattaggcgaacagatacc |
119 |
Q |
| |
|
||||||||| |||||| ||||||||| | ||| |||| ||| |||||||||||| |||||||| || || ||||| ||| ||||||||||||||||||| |
|
|
| T |
25226 |
atatatatttaattggtgaattaattaatttattgtttattatttcctttgttgtagaagctgcgatcgagatatgttttcaattaggcgaacagatacc |
25325 |
T |
|
| Q |
120 |
cctcttggttcgttagg |
136 |
Q |
| |
|
||||||||||| ||||| |
|
|
| T |
25326 |
cctcttggttcattagg |
25342 |
T |
|
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Target: chr4 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 306 - 357
Target Start/End: Complemental strand, 28925813 - 28925762
Alignment:
| Q |
306 |
tatcaactcattttggctgctacagaaactaaaagagcatggtatgatcgac |
357 |
Q |
| |
|
|||||||| | ||||||||||| ||| ||||||||||||||||||||||||| |
|
|
| T |
28925813 |
tatcaacttagtttggctgctatagacactaaaagagcatggtatgatcgac |
28925762 |
T |
|
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