View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14412_high_12 (Length: 261)
Name: NF14412_high_12
Description: NF14412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14412_high_12 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 155; Significance: 2e-82; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 1 - 167
Target Start/End: Original strand, 15924635 - 15924801
Alignment:
| Q |
1 |
atcaaggagttgttttggttcttccaggtccagaagatgatgatggtaacaatggaagaatgataaaagtttcattgccagggaaagaacttgaccagtt |
100 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15924635 |
atcaaggagttgttttggtttttccaggtccagaagatgatgatggtaacaatggaagaatgataaaagtttcattgccagggaaagaacttgaccagtt |
15924734 |
T |
|
| Q |
101 |
gaaatataagcttgaaagagaatggggtatacaacattatccaagtctaccattttaattttatgaa |
167 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| |
|
|
| T |
15924735 |
gaaatataagcttgaaagagaatggggtatacaacattatgcaagtctaacattttaattttatgaa |
15924801 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 4 - 134
Target Start/End: Original strand, 13116456 - 13116586
Alignment:
| Q |
4 |
aaggagttgttttggttcttccaggtccagaagatgatgatggtaacaatggaagaatgataaaagtttcattgccagggaaagaacttgaccagttgaa |
103 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||| ||||||||| |||||||| ||||||| ||||||||||||||| ||||||||||||||| |||| |
|
|
| T |
13116456 |
aaggagttgttttggttcttccaggaccagaagatactgatggtaataatggaaggatgataacagtttcattgccaggaaaagaacttgaccagctgaa |
13116555 |
T |
|
| Q |
104 |
atataagcttgaaagagaatggggtatacaa |
134 |
Q |
| |
|
|| ||| || | | |||||| ||| |||||| |
|
|
| T |
13116556 |
atgtaaactagcaggagaattgggaatacaa |
13116586 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 134
Target Start/End: Original strand, 46011585 - 46011718
Alignment:
| Q |
1 |
atcaaggagttgttttggttcttccaggtccagaagatgatgatggtaacaatggaagaatgataaaagtttcattgccagggaaagaacttgaccagtt |
100 |
Q |
| |
|
||||||||||||||||||||||| |||| ||||||||| | ||||||| |||||||| ||| ||| | |||| || || ||||||||||||||||| || |
|
|
| T |
46011585 |
atcaaggagttgttttggttctttcaggaccagaagattacaatggtaataatggaaggatggtaacaatttctttacctgggaaagaacttgaccaatt |
46011684 |
T |
|
| Q |
101 |
gaaatataagcttgaaagagaatggggtatacaa |
134 |
Q |
| |
|
||||| ||| || | | |||||||| ||||||| |
|
|
| T |
46011685 |
gaaatgtaaactagcacaagaatgggatatacaa |
46011718 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University