View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14412_high_14 (Length: 244)

Name: NF14412_high_14
Description: NF14412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14412_high_14
NF14412_high_14
[»] chr8 (5 HSPs)
chr8 (18-105)||(15290831-15290918)
chr8 (18-105)||(15471200-15471287)
chr8 (18-104)||(42575100-42575186)
chr8 (18-74)||(3439806-3439861)
chr8 (18-74)||(25690260-25690313)
[»] chr6 (13 HSPs)
chr6 (18-105)||(33341877-33341964)
chr6 (18-105)||(13154222-13154309)
chr6 (18-105)||(13159078-13159165)
chr6 (18-105)||(34165165-34165252)
chr6 (18-105)||(6027553-6027639)
chr6 (18-105)||(25421613-25421699)
chr6 (18-104)||(6136079-6136164)
chr6 (18-104)||(34167387-34167472)
chr6 (18-74)||(16555174-16555228)
chr6 (18-74)||(16578327-16578381)
chr6 (18-74)||(16616999-16617053)
chr6 (18-74)||(16631730-16631784)
chr6 (18-74)||(16653417-16653471)
[»] chr4 (6 HSPs)
chr4 (18-105)||(5136373-5136460)
chr4 (18-104)||(5138598-5138684)
chr4 (18-104)||(8395911-8395996)
chr4 (18-105)||(8393702-8393788)
chr4 (18-105)||(7122990-7123076)
chr4 (18-104)||(7125209-7125294)
[»] chr3 (13 HSPs)
chr3 (18-104)||(10211702-10211788)
chr3 (18-105)||(10209482-10209569)
chr3 (18-105)||(10056526-10056613)
chr3 (18-105)||(10058748-10058835)
chr3 (18-105)||(10060970-10061057)
chr3 (18-105)||(10063192-10063279)
chr3 (18-105)||(10065414-10065501)
chr3 (18-105)||(10067613-10067700)
chr3 (18-105)||(25637737-25637823)
chr3 (18-105)||(4598298-4598384)
chr3 (18-105)||(4600519-4600605)
chr3 (18-104)||(3617757-3617842)
chr3 (18-74)||(45283292-45283345)
[»] chr5 (8 HSPs)
chr5 (18-105)||(16544718-16544805)
chr5 (18-105)||(16546940-16547027)
chr5 (18-105)||(40380398-40380484)
chr5 (18-105)||(25078428-25078514)
chr5 (18-105)||(25136397-25136483)
chr5 (18-104)||(10593565-10593650)
chr5 (18-104)||(40382609-40382694)
chr5 (18-76)||(22536101-22536156)
[»] chr2 (4 HSPs)
chr2 (18-105)||(13655804-13655890)
chr2 (18-104)||(12647162-12647247)
chr2 (193-226)||(32241360-32241393)
chr2 (194-226)||(24433718-24433750)
[»] chr7 (6 HSPs)
chr7 (18-104)||(18388536-18388621)
chr7 (18-105)||(6594333-6594419)
chr7 (18-105)||(18391971-18392057)
chr7 (18-104)||(6592116-6592201)
chr7 (18-104)||(32060098-32060183)
chr7 (18-104)||(1560441-1560526)
[»] scaffold0565 (1 HSPs)
scaffold0565 (18-106)||(2378-2465)
[»] scaffold0137 (1 HSPs)
scaffold0137 (18-105)||(6582-6668)
[»] chr1 (1 HSPs)
chr1 (18-104)||(44203939-44204024)
[»] scaffold1808 (1 HSPs)
scaffold1808 (18-61)||(172-215)
[»] scaffold0674 (1 HSPs)
scaffold0674 (18-61)||(3544-3587)
[»] scaffold1678 (1 HSPs)
scaffold1678 (193-226)||(991-1024)


Alignment Details
Target: chr8 (Bit Score: 84; Significance: 5e-40; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 18 - 105
Target Start/End: Original strand, 15290831 - 15290918
Alignment:
Q  18 gttaccactctccgtcgctccacacatcattattctttgtatttgtgtggttcgatccgggtcttggaggtccggggattcacaacaa 105  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  15290831 gttaccactctccgtcgctccacacatcattattctttgtattggtgtggttcgatccgggtcttggaggtccggggattcacaacaa 15290918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 18 - 105
Target Start/End: Original strand, 15471200 - 15471287
Alignment:
Q  18 gttaccactctccgtcgctccacacatcattattctttgtatttgtgtggttcgatccgggtcttggaggtccggggattcacaacaa 105  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  15471200 gttaccactctccgtcgctccacacatcattattctttgtattggtgtggttcgatccgggtcttggaggtccggggattcacaacaa 15471287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 18 - 104
Target Start/End: Complemental strand, 42575186 - 42575100
Alignment:
Q  18 gttaccactctccgtcgctccacacatcattattctttgtatttgtgtggttcgatccgggtcttggaggtccggggattcacaaca 104  Q
    |||||||||||||||||||||||||||||||||  |||||||| ||||||||||||||||||||||||||  |||||||||||||||    
T  42575186 gttaccactctccgtcgctccacacatcattatagtttgtattggtgtggttcgatccgggtcttggaggctcggggattcacaaca 42575100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 74
Target Start/End: Original strand, 3439806 - 3439861
Alignment:
Q  18 gttaccactctccgtcgctccacacatcattattctttgtatttgtgtggttcgatc 74  Q
    |||||| |||||||||||||||||||||||| || || ||||| |||||||||||||    
T  3439806 gttaccgctctccgtcgctccacacatcatt-tttttagtattggtgtggttcgatc 3439861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 74
Target Start/End: Original strand, 25690260 - 25690313
Alignment:
Q  18 gttaccactctccgtcgctccacacatcattattctttgtatttgtgtggttcgatc 74  Q
    ||||||||||||| | ||||||||||||   |||||||||||| |||||||||||||    
T  25690260 gttaccactctcctttgctccacacatc---attctttgtattggtgtggttcgatc 25690313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 84; Significance: 5e-40; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 18 - 105
Target Start/End: Complemental strand, 33341964 - 33341877
Alignment:
Q  18 gttaccactctccgtcgctccacacatcattattctttgtatttgtgtggttcgatccgggtcttggaggtccggggattcacaacaa 105  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  33341964 gttaccactctccgtcgctccacacatcattattctttgtattggtgtggttcgatccgggtcttggaggtccggggattcacaacaa 33341877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 18 - 105
Target Start/End: Original strand, 13154222 - 13154309
Alignment:
Q  18 gttaccactctccgtcgctccacacatcattattctttgtatttgtgtggttcgatccgggtcttggaggtccggggattcacaacaa 105  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||    
T  13154222 gttaccactctccgtcgctccacacatcattattctttgtattggtgtggttcgatccgggtcttggaggtccgaggattcacaacaa 13154309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 18 - 105
Target Start/End: Original strand, 13159078 - 13159165
Alignment:
Q  18 gttaccactctccgtcgctccacacatcattattctttgtatttgtgtggttcgatccgggtcttggaggtccggggattcacaacaa 105  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||    
T  13159078 gttaccactctccgtcgctccacacatcattattctttgtattggtgtggttcgatccgggtcttggaggtccgaggattcacaacaa 13159165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 18 - 105
Target Start/End: Original strand, 34165165 - 34165252
Alignment:
Q  18 gttaccactctccgtcgctccacacatcattattctttgtatttgtgtggttcgatccgggtcttggaggtccggggattcacaacaa 105  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||  ||||||||| ||||||||||||||||    
T  34165165 gttaccactctccgtcgctccacacatcattattctttgtattggtgtggttcgatccggaccttggaggttcggggattcacaacaa 34165252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 18 - 105
Target Start/End: Original strand, 6027553 - 6027639
Alignment:
Q  18 gttaccactctccgtcgctccacacatcattattctttgtatttgtgtggttcgatccgggtcttggaggtccggggattcacaacaa 105  Q
    |||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||  ||||||||| ||||||||||||||||||    
T  6027553 gttacccctctccgtcgctccacacatcattattctttgtattggtgtggttcgatcc-agtcttggagatccggggattcacaacaa 6027639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 18 - 105
Target Start/End: Original strand, 25421613 - 25421699
Alignment:
Q  18 gttaccactctccgtcgctccacacatcattattctttgtatttgtgtggttcgatccgggtcttggaggtccggggattcacaacaa 105  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| || ||||||||  ||||||||||||||||    
T  25421613 gttaccactctccgtcgctccacacatcattattctttgtattggtgtggttcgatcc-ggccttggaggctcggggattcacaacaa 25421699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 18 - 104
Target Start/End: Complemental strand, 6136164 - 6136079
Alignment:
Q  18 gttaccactctccgtcgctccacacatcattattctttgtatttgtgtggttcgatccgggtcttggaggtccggggattcacaaca 104  Q
    ||||||||||||||| ||||||||||||||||||||||||||| || ||||||||||| || |||||||||||||||||||||||||    
T  6136164 gttaccactctccgttgctccacacatcattattctttgtattggtatggttcgatcc-ggccttggaggtccggggattcacaaca 6136079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 18 - 104
Target Start/End: Original strand, 34167387 - 34167472
Alignment:
Q  18 gttaccactctccgtcgctccacacatcattattctttgtatttgtgtggttcgatccgggtcttggaggtccggggattcacaaca 104  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |  ||||||||  |||||||||||||||    
T  34167387 gttaccactctccgtcgctccacacatcattattctttgtattggtgtggttcgatcc-gaccttggaggctcggggattcacaaca 34167472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 74
Target Start/End: Original strand, 16555174 - 16555228
Alignment:
Q  18 gttaccactctccgtcgctccacacatcattattctttgtatttgtgtggttcgatc 74  Q
    ||||||||||||| | |||||||||||||||||  || ||||| |||||||||||||    
T  16555174 gttaccactctccttggctccacacatcattat--ttagtattggtgtggttcgatc 16555228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 74
Target Start/End: Complemental strand, 16578381 - 16578327
Alignment:
Q  18 gttaccactctccgtcgctccacacatcattattctttgtatttgtgtggttcgatc 74  Q
    ||||||||||||| | |||||||||||||||||  || ||||| |||||||||||||    
T  16578381 gttaccactctccttggctccacacatcattat--ttagtattggtgtggttcgatc 16578327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 74
Target Start/End: Original strand, 16616999 - 16617053
Alignment:
Q  18 gttaccactctccgtcgctccacacatcattattctttgtatttgtgtggttcgatc 74  Q
    ||||||||||||| | |||||||||||||||||  || ||||| |||||||||||||    
T  16616999 gttaccactctccttggctccacacatcattat--ttagtattggtgtggttcgatc 16617053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 74
Target Start/End: Original strand, 16631730 - 16631784
Alignment:
Q  18 gttaccactctccgtcgctccacacatcattattctttgtatttgtgtggttcgatc 74  Q
    ||||||||||||| | |||||||||||||||||  || ||||| |||||||||||||    
T  16631730 gttaccactctccttggctccacacatcattat--ttagtattggtgtggttcgatc 16631784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 74
Target Start/End: Original strand, 16653417 - 16653471
Alignment:
Q  18 gttaccactctccgtcgctccacacatcattattctttgtatttgtgtggttcgatc 74  Q
    ||||||||||||| | |||||||||||||||||  || ||||| |||||||||||||    
T  16653417 gttaccactctccttggctccacacatcattat--ttagtattggtgtggttcgatc 16653471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 84; Significance: 5e-40; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 18 - 105
Target Start/End: Original strand, 5136373 - 5136460
Alignment:
Q  18 gttaccactctccgtcgctccacacatcattattctttgtatttgtgtggttcgatccgggtcttggaggtccggggattcacaacaa 105  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  5136373 gttaccactctccgtcgctccacacatcattattctttgtattggtgtggttcgatccgggtcttggaggtccggggattcacaacaa 5136460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 18 - 104
Target Start/End: Original strand, 5138598 - 5138684
Alignment:
Q  18 gttaccactctccgtcgctccacacatcattattctttgtatttgtgtggttcgatccgggtcttggaggtccggggattcacaaca 104  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  5138598 gttaccactctccgtcgctccacacatcattattctttgtattggtgtggttcgatccgggtcttggaggtccggggattcacaaca 5138684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 18 - 104
Target Start/End: Original strand, 8395911 - 8395996
Alignment:
Q  18 gttaccactctccgtcgctccacacatcattattctttgtatttgtgtggttcgatccgggtcttggaggtccggggattcacaaca 104  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||    
T  8395911 gttaccactctccgtcgctccacacatcattattctttgtattggtgtggttcgatcc-ggtcttggaggtccggggattcacaaca 8395996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 18 - 105
Target Start/End: Original strand, 8393702 - 8393788
Alignment:
Q  18 gttaccactctccgtcgctccacacatcattattctttgtatttgtgtggttcgatccgggtcttggaggtccggggattcacaacaa 105  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||| ||||||||||||||||||||||    
T  8393702 gttaccactctccgtcgctccacacatcattattctttgtattggtgtggttcgatcc-ggtctttgaggtccggggattcacaacaa 8393788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 18 - 105
Target Start/End: Original strand, 7122990 - 7123076
Alignment:
Q  18 gttaccactctccgtcgctccacacatcattattctttgtatttgtgtggttcgatccgggtcttggaggtccggggattcacaacaa 105  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| || ||||||||| ||||||||||||||||    
T  7122990 gttaccactctccgtcgctccacacatcattattctttgtattggtgtggttcgatcc-ggccttggaggttcggggattcacaacaa 7123076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 18 - 104
Target Start/End: Original strand, 7125209 - 7125294
Alignment:
Q  18 gttaccactctccgtcgctccacacatcattattctttgtatttgtgtggttcgatccgggtcttggaggtccggggattcacaaca 104  Q
    |||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| || ||||||||| |||||||||||||||    
T  7125209 gttaccactctccgtcgctccacacatcattattctttatattggtgtggttcgatcc-ggccttggaggttcggggattcacaaca 7125294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 79; Significance: 5e-37; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 18 - 104
Target Start/End: Original strand, 10211702 - 10211788
Alignment:
Q  18 gttaccactctccgtcgctccacacatcattattctttgtatttgtgtggttcgatccgggtcttggaggtccggggattcacaaca 104  Q
    |||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||    
T  10211702 gttaccactctccgtcgctccacacatcattattctctgtattggtgtggttcgatccgggtcttggaggtccggggattcacaaca 10211788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 18 - 105
Target Start/End: Original strand, 10209482 - 10209569
Alignment:
Q  18 gttaccactctccgtcgctccacacatcattattctttgtatttgtgtggttcgatccgggtcttggaggtccggggattcacaacaa 105  Q
    |||||||||||||||| ||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  10209482 gttaccactctccgtcactccacacatcattattctctgtattggtgtggttcgatccgggtcttggaggtccggggattcacaacaa 10209569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 18 - 105
Target Start/End: Original strand, 10056526 - 10056613
Alignment:
Q  18 gttaccactctccgtcgctccacacatcattattctttgtatttgtgtggttcgatccgggtcttggaggtccggggattcacaacaa 105  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||  ||||||||| ||||||||||||||||    
T  10056526 gttaccactctccgtcgctccacacatcattattctttgtattggtgtggttcgatccggaccttggaggttcggggattcacaacaa 10056613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 18 - 105
Target Start/End: Original strand, 10058748 - 10058835
Alignment:
Q  18 gttaccactctccgtcgctccacacatcattattctttgtatttgtgtggttcgatccgggtcttggaggtccggggattcacaacaa 105  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||  ||||||||| ||||||||||||||||    
T  10058748 gttaccactctccgtcgctccacacatcattattctttgtattggtgtggttcgatccggaccttggaggttcggggattcacaacaa 10058835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 18 - 105
Target Start/End: Original strand, 10060970 - 10061057
Alignment:
Q  18 gttaccactctccgtcgctccacacatcattattctttgtatttgtgtggttcgatccgggtcttggaggtccggggattcacaacaa 105  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||  ||||||||| ||||||||||||||||    
T  10060970 gttaccactctccgtcgctccacacatcattattctttgtattggtgtggttcgatccggaccttggaggttcggggattcacaacaa 10061057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 18 - 105
Target Start/End: Original strand, 10063192 - 10063279
Alignment:
Q  18 gttaccactctccgtcgctccacacatcattattctttgtatttgtgtggttcgatccgggtcttggaggtccggggattcacaacaa 105  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||  ||||||||| ||||||||||||||||    
T  10063192 gttaccactctccgtcgctccacacatcattattctttgtattggtgtggttcgatccggaccttggaggttcggggattcacaacaa 10063279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 18 - 105
Target Start/End: Original strand, 10065414 - 10065501
Alignment:
Q  18 gttaccactctccgtcgctccacacatcattattctttgtatttgtgtggttcgatccgggtcttggaggtccggggattcacaacaa 105  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||  ||||||||| ||||||||||||||||    
T  10065414 gttaccactctccgtcgctccacacatcattattctttgtattggtgtggttcgatccggaccttggaggttcggggattcacaacaa 10065501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 18 - 105
Target Start/End: Original strand, 10067613 - 10067700
Alignment:
Q  18 gttaccactctccgtcgctccacacatcattattctttgtatttgtgtggttcgatccgggtcttggaggtccggggattcacaacaa 105  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||  ||||||||| ||||||||||||||||    
T  10067613 gttaccactctccgtcgctccacacatcattattctttgtattggtgtggttcgatccggaccttggaggttcggggattcacaacaa 10067700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 18 - 105
Target Start/End: Original strand, 25637737 - 25637823
Alignment:
Q  18 gttaccactctccgtcgctccacacatcattattctttgtatttgtgtggttcgatccgggtcttggaggtccggggattcacaacaa 105  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |  ||||||||||||||||||||||||||    
T  25637737 gttaccactctccgtcgctccacacatcattattctttgtattggtgtggttcgatcc-gaccttggaggtccggggattcacaacaa 25637823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 18 - 105
Target Start/End: Complemental strand, 4598384 - 4598298
Alignment:
Q  18 gttaccactctccgtcgctccacacatcattattctttgtatttgtgtggttcgatccgggtcttggaggtccggggattcacaacaa 105  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |  ||||||||| ||||||||||||||||    
T  4598384 gttaccactctccgtcgctccacacatcattattctttgtattggtgtggttcgatcc-gaccttggaggttcggggattcacaacaa 4598298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 18 - 105
Target Start/End: Complemental strand, 4600605 - 4600519
Alignment:
Q  18 gttaccactctccgtcgctccacacatcattattctttgtatttgtgtggttcgatccgggtcttggaggtccggggattcacaacaa 105  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |  ||||||||| ||||||||||||||||    
T  4600605 gttaccactctccgtcgctccacacatcattattctttgtattggtgtggttcgatcc-gaccttggaggttcggggattcacaacaa 4600519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 18 - 104
Target Start/End: Original strand, 3617757 - 3617842
Alignment:
Q  18 gttaccactctccgtcgctccacacatcattattctttgtatttgtgtggttcgatccgggtcttggaggtccggggattcacaaca 104  Q
    ||||||||||||||||||||||||||||||| || |||||||| |||||||||||||| |  ||||||||  |||||||||||||||    
T  3617757 gttaccactctccgtcgctccacacatcattcttatttgtattggtgtggttcgatcc-gaccttggaggctcggggattcacaaca 3617842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 18 - 74
Target Start/End: Original strand, 45283292 - 45283345
Alignment:
Q  18 gttaccactctccgtcgctccacacatcattattctttgtatttgtgtggttcgatc 74  Q
    |||||| |||||||||||||||||||||   |||||||||||| |||||||||||||    
T  45283292 gttaccgctctccgtcgctccacacatc---attctttgtattggtgtggttcgatc 45283345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 68; Significance: 2e-30; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 18 - 105
Target Start/End: Original strand, 16544718 - 16544805
Alignment:
Q  18 gttaccactctccgtcgctccacacatcattattctttgtatttgtgtggttcgatccgggtcttggaggtccggggattcacaacaa 105  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||  ||||||||  ||||||||||||||||    
T  16544718 gttaccactctccgtcgctccacacatcattattctttgtattggtgtggttcgatccggtccttggaggctcggggattcacaacaa 16544805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 18 - 105
Target Start/End: Original strand, 16546940 - 16547027
Alignment:
Q  18 gttaccactctccgtcgctccacacatcattattctttgtatttgtgtggttcgatccgggtcttggaggtccggggattcacaacaa 105  Q
    |||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||  ||||||||  ||||||||||||||||    
T  16546940 gttatcactctccgtcgctccacacatcattattctttgtattggtgtggttcgatccggtccttggaggctcggggattcacaacaa 16547027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 18 - 105
Target Start/End: Original strand, 40380398 - 40380484
Alignment:
Q  18 gttaccactctccgtcgctccacacatcattattctttgtatttgtgtggttcgatccgggtcttggaggtccggggattcacaacaa 105  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| || ||||||||  ||||||||||||||||    
T  40380398 gttaccactctccgtcgctccacacatcattattctttgtattggtgtggttcgatcc-ggccttggaggctcggggattcacaacaa 40380484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 18 - 105
Target Start/End: Original strand, 25078428 - 25078514
Alignment:
Q  18 gttaccactctccgtcgctccacacatcattattctttgtatttgtgtggttcgatccgggtcttggaggtccggggattcacaacaa 105  Q
    ||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| || |||||||||  |||||||||||||||    
T  25078428 gttaccactctccgtcgctccacacatcattcttctttgtattggtgtggttcgatcc-ggccttggaggtttggggattcacaacaa 25078514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 18 - 105
Target Start/End: Original strand, 25136397 - 25136483
Alignment:
Q  18 gttaccactctccgtcgctccacacatcattattctttgtatttgtgtggttcgatccgggtcttggaggtccggggattcacaacaa 105  Q
    ||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| || |||||||||  |||||||||||||||    
T  25136397 gttaccactctccgtcgctccacacatcattcttctttgtattggtgtggttcgatcc-ggccttggaggtttggggattcacaacaa 25136483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 18 - 104
Target Start/End: Original strand, 10593565 - 10593650
Alignment:
Q  18 gttaccactctccgtcgctccacacatcattattctttgtatttgtgtggttcgatccgggtcttggaggtccggggattcacaaca 104  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| | |||||||| | ||||||| |||||||    
T  10593565 gttaccactctccgtcgctccacacatcattattctttgtattggtgtggttcgatcc-gatcttggagatacggggatacacaaca 10593650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 18 - 104
Target Start/End: Original strand, 40382609 - 40382694
Alignment:
Q  18 gttaccactctccgtcgctccacacatcattattctttgtatttgtgtggttcgatccgggtcttggaggtccggggattcacaaca 104  Q
    |||||||||||||| |||||||||||||||||||||||||||| |||||||||||||| || ||||||||  |||||||||||||||    
T  40382609 gttaccactctccgccgctccacacatcattattctttgtattggtgtggttcgatcc-ggccttggaggctcggggattcacaaca 40382694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 18 - 76
Target Start/End: Complemental strand, 22536156 - 22536101
Alignment:
Q  18 gttaccactctccgtcgctccacacatcattattctttgtatttgtgtggttcgatccg 76  Q
    |||||| |||||||||||||||||||||   |||||||||||| |||||||||||||||    
T  22536156 gttaccgctctccgtcgctccacacatc---attctttgtattggtgtggttcgatccg 22536101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 68; Significance: 2e-30; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 18 - 105
Target Start/End: Complemental strand, 13655890 - 13655804
Alignment:
Q  18 gttaccactctccgtcgctccacacatcattattctttgtatttgtgtggttcgatccgggtcttggaggtccggggattcacaacaa 105  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |  ||||||||||||||||||||||||||    
T  13655890 gttaccactctccgtcgctccacacatcattattctttgtattggtgtggttcgatcc-gaccttggaggtccggggattcacaacaa 13655804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 18 - 104
Target Start/End: Complemental strand, 12647247 - 12647162
Alignment:
Q  18 gttaccactctccgtcgctccacacatcattattctttgtatttgtgtggttcgatccgggtcttggaggtccggggattcacaaca 104  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| || ||||||||  |||||||||||||||    
T  12647247 gttaccactctccgtcgctccacacatcattattctttgtattggtgtggttcgatcc-ggccttggaggctcggggattcacaaca 12647162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 193 - 226
Target Start/End: Complemental strand, 32241393 - 32241360
Alignment:
Q  193 gatcatttgctatcgttgctctcattgtctcagc 226  Q
    |||||||||||||||||||||||||||| |||||    
T  32241393 gatcatttgctatcgttgctctcattgtttcagc 32241360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 194 - 226
Target Start/End: Complemental strand, 24433750 - 24433718
Alignment:
Q  194 atcatttgctatcgttgctctcattgtctcagc 226  Q
    |||||||||| ||||||||||||||||||||||    
T  24433750 atcatttgctgtcgttgctctcattgtctcagc 24433718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 67; Significance: 7e-30; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 18 - 104
Target Start/End: Complemental strand, 18388621 - 18388536
Alignment:
Q  18 gttaccactctccgtcgctccacacatcattattctttgtatttgtgtggttcgatccgggtcttggaggtccggggattcacaaca 104  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| || ||||||||| |||||||||||||||    
T  18388621 gttaccactctccgtcgctccacacatcattattctttgtattggtgtggttcgatcc-ggccttggaggttcggggattcacaaca 18388536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 18 - 105
Target Start/End: Complemental strand, 6594419 - 6594333
Alignment:
Q  18 gttaccactctccgtcgctccacacatcattattctttgtatttgtgtggttcgatccgggtcttggaggtccggggattcacaacaa 105  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| || ||||||||  ||||||||||||||||    
T  6594419 gttaccactctccgtcgctccacacatcattattctttgtattggtgtggttcgatcc-ggccttggaggctcggggattcacaacaa 6594333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 18 - 105
Target Start/End: Complemental strand, 18392057 - 18391971
Alignment:
Q  18 gttaccactctccgtcgctccacacatcattattctttgtatttgtgtggttcgatccgggtcttggaggtccggggattcacaacaa 105  Q
    |||||||||||| |||||||||||||||||||||||||||||| |||||||||||||| || ||||||||| ||||||||||||||||    
T  18392057 gttaccactctctgtcgctccacacatcattattctttgtattggtgtggttcgatcc-ggccttggaggttcggggattcacaacaa 18391971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 18 - 104
Target Start/End: Complemental strand, 6592201 - 6592116
Alignment:
Q  18 gttaccactctccgtcgctccacacatcattattctttgtatttgtgtggttcgatccgggtcttggaggtccggggattcacaaca 104  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| || ||||||||  |||||||||||||||    
T  6592201 gttaccactctccgtcgctccacacatcattattctttgtattggtgtggttcgatcc-ggccttggaggctcggggattcacaaca 6592116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 18 - 104
Target Start/End: Complemental strand, 32060183 - 32060098
Alignment:
Q  18 gttaccactctccgtcgctccacacatcattattctttgtatttgtgtggttcgatccgggtcttggaggtccggggattcacaaca 104  Q
    |||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| || ||||||||| |||||||||||||||    
T  32060183 gttaccactctccgtcgctccacacatcattattctttatattggtgtggttcgatcc-ggccttggaggttcggggattcacaaca 32060098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 18 - 104
Target Start/End: Complemental strand, 1560526 - 1560441
Alignment:
Q  18 gttaccactctccgtcgctccacacatcattattctttgtatttgtgtggttcgatccgggtcttggaggtccggggattcacaaca 104  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |  ||||||||  |||||||||||||||    
T  1560526 gttaccactctccgtcgctccacacatcattattctttgtattggtgtggttcgatcc-gaccttggaggctcggggattcacaaca 1560441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0565 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: scaffold0565
Description:

Target: scaffold0565; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 18 - 106
Target Start/End: Complemental strand, 2465 - 2378
Alignment:
Q  18 gttaccactctccgtcgctccacacatcattattctttgtatttgtgtggttcgatccgggtcttggaggtccggggattcacaacaac 106  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |  ||||||||  |||||||||||||||||    
T  2465 gttaccactctccgtcgctccacacatcattattctttgtattggtgtggttcgatcc-gaccttggaggctcggggattcacaacaac 2378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0137 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: scaffold0137
Description:

Target: scaffold0137; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 18 - 105
Target Start/End: Original strand, 6582 - 6668
Alignment:
Q  18 gttaccactctccgtcgctccacacatcattattctttgtatttgtgtggttcgatccgggtcttggaggtccggggattcacaacaa 105  Q
    |||||||||||||||||||||||| |||||||||||||||||| |||||||||||||| ||||||||||   ||||||||||||||||    
T  6582 gttaccactctccgtcgctccacatatcattattctttgtattggtgtggttcgatcc-ggtcttggagactcggggattcacaacaa 6668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 18 - 104
Target Start/End: Original strand, 44203939 - 44204024
Alignment:
Q  18 gttaccactctccgtcgctccacacatcattattctttgtatttgtgtggttcgatccgggtcttggaggtccggggattcacaaca 104  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |  ||||||||  |||||||||||||||    
T  44203939 gttaccactctccgtcgctccacacatcattattctttgtattggtgtggttcgatcc-gaccttggaggctcggggattcacaaca 44204024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1808 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold1808
Description:

Target: scaffold1808; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 18 - 61
Target Start/End: Original strand, 172 - 215
Alignment:
Q  18 gttaccactctccgtcgctccacacatcattattctttgtattt 61  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  172 gttaccactctccgtcgctccacacatcattattctttgtattt 215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0674 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0674
Description:

Target: scaffold0674; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 18 - 61
Target Start/End: Complemental strand, 3587 - 3544
Alignment:
Q  18 gttaccactctccgtcgctccacacatcattattctttgtattt 61  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  3587 gttaccactctccgtcgctccacacatcattattctttgtattt 3544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1678 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold1678
Description:

Target: scaffold1678; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 193 - 226
Target Start/End: Complemental strand, 1024 - 991
Alignment:
Q  193 gatcatttgctatcgttgctctcattgtctcagc 226  Q
    |||||||| |||||||||||||||||||||||||    
T  1024 gatcattttctatcgttgctctcattgtctcagc 991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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