View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14412_high_19 (Length: 221)

Name: NF14412_high_19
Description: NF14412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14412_high_19
NF14412_high_19
[»] chr5 (1 HSPs)
chr5 (18-205)||(36233712-36233898)
[»] chr4 (1 HSPs)
chr4 (84-201)||(30219203-30219319)
[»] chr7 (2 HSPs)
chr7 (54-201)||(19596616-19596764)
chr7 (54-201)||(19754570-19754718)
[»] scaffold0352 (1 HSPs)
scaffold0352 (82-201)||(8636-8754)
[»] chr1 (2 HSPs)
chr1 (101-201)||(29871754-29871854)
chr1 (54-191)||(33906169-33906309)
[»] chr3 (2 HSPs)
chr3 (54-153)||(39286639-39286738)
chr3 (100-201)||(27479500-27479599)
[»] chr2 (1 HSPs)
chr2 (103-201)||(35283338-35283436)


Alignment Details
Target: chr5 (Bit Score: 140; Significance: 2e-73; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 18 - 205
Target Start/End: Original strand, 36233712 - 36233898
Alignment:
Q  18 atgtaggcctatgaagcagtaatatgnnnnnnnnaaaagcaagattttattaaattgaatacaaggggtactccaagtcgattacaataagtcaagaaat 117  Q
    ||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||    
T  36233712 atgtaggcctatgaagcagtaatatgttttttttaaaagcaagattttattaaattgaatacaaggg-tactccaagtccattacaataagtcaagaaat 36233810  T
Q  118 tgcatgttttgaagatatacaatggggttcgaccactaatccgagaaaacaaattttttattatgcccctccccacatatgaactaag 205  Q
    | |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  36233811 tacatgttttgaagatatacaatggggttcaaccactaatccgagaaaacaaattttttattatgcccctccctacatatgaactaag 36233898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 62; Significance: 6e-27; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 84 - 201
Target Start/End: Original strand, 30219203 - 30219319
Alignment:
Q  84 ggtactccaagtcgattacaataagtcaagaaattgcatgttttgaagatatacaatggggttcgaccactaatccgagaaaacaaattttttattatgc 183  Q
    ||||||| ||| | ||||||||||||||||||||| ||||||||||||| ||| ||| |||||  ||||| |||| ||| ||||||||||||||||||||    
T  30219203 ggtactcgaagcccattacaataagtcaagaaattacatgttttgaagacatataatagggtttaaccaccaatctgaggaaacaaattttttattatgc 30219302  T
Q  184 ccctccccacatatgaac 201  Q
    ||||||||| ||||||||    
T  30219303 ccctcccca-atatgaac 30219319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 49; Significance: 3e-19; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 54 - 201
Target Start/End: Complemental strand, 19596764 - 19596616
Alignment:
Q  54 aagcaagattttattaaattgaatacaaggggtactccaagtcgattacaat-aagtcaagaaattgcatgttttgaagatatacaatggggttcgacca 152  Q
    ||||||||||||||||||  |  |||| ||||||||| ||| | |||||||  |||||| |||||| |||| |||||| | || ||||||||||| || |    
T  19596764 aagcaagattttattaaaacgtgtacatggggtactcgaagcccattacaaagaagtcaggaaattacatgctttgaatacatgcaatggggttcaacaa 19596665  T
Q  153 ctaatccgagaaaacaaattttttattatgcccctccccacatatgaac 201  Q
    | ||||| ||||||||||  |||||||| ||||||||||||| ||||||    
T  19596664 ccaatccaagaaaacaaaagttttattacgcccctccccacaaatgaac 19596616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 54 - 201
Target Start/End: Original strand, 19754570 - 19754718
Alignment:
Q  54 aagcaagattttattaaattgaatacaaggggtactccaagtcgattacaat-aagtcaagaaattgcatgttttgaagatatacaatggggttcgacca 152  Q
    ||||||||||||||||||  |  |||| ||||||||| ||| | |||||||  |||||| ||||||  ||| |||||| | || ||||  ||||| ||||    
T  19754570 aagcaagattttattaaaacgtgtacatggggtactcaaagcccattacaaagaagtcaggaaattatatgctttgaatacatgcaatttggttcaacca 19754669  T
Q  153 ctaatccgagaaaacaaattttttattatgcccctccccacatatgaac 201  Q
    | ||||| ||||||||||  |||||||| ||||||||||||| ||||||    
T  19754670 ccaatccaagaaaacaaaagttttattacgcccctccccacaaatgaac 19754718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0352 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: scaffold0352
Description:

Target: scaffold0352; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 82 - 201
Target Start/End: Complemental strand, 8754 - 8636
Alignment:
Q  82 ggggtactccaagtcgattacaataagtcaagaaattgcatgttttgaagatatacaatggggttcgaccactaatccgagaaaacaaattttttattat 181  Q
    ||||||||| ||| | |||| |||||||||| ||||  ||||||||||||| |||||||||||||| | ||| ||||| |||||| |||   |||||||     
T  8754 ggggtactcaaagcccattataataagtcaaaaaataacatgttttgaagacatacaatggggttcaagcaccaatccaagaaaa-aaaaaatttattac 8656  T
Q  182 gcccctccccacatatgaac 201  Q
    ||||||||||| ||||||||    
T  8655 gcccctccccatatatgaac 8636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 101 - 201
Target Start/End: Original strand, 29871754 - 29871854
Alignment:
Q  101 acaataagtcaagaaattgcatgttttgaagatatacaatggggttcgaccactaatccgagaaaacaaattttttattatgcccctccccacatatgaa 200  Q
    |||||||||| | ||||| ||||||| | ||| ||||||| |||||| ||||| |||  ||||||| ||| |||||||||||||| |||||||| |||||    
T  29871754 acaataagtcgaaaaattacatgtttagtagacatacaattgggttcaaccaccaatatgagaaaataaagtttttattatgcccttccccacaaatgaa 29871853  T
Q  201 c 201  Q
    |    
T  29871854 c 29871854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 54 - 191
Target Start/End: Complemental strand, 33906309 - 33906169
Alignment:
Q  54 aagcaagatttt-attaaattgaatacaaggggtactccaagtcgattacaataagtcaagaaa-ttgcatgttttgaagatatacaatggggttcgacc 151  Q
    |||||||||||| ||||||  ||||||||| | ||||| ||| | |||||||||||| || ||| || ||| ||||||||||||||||||  |||| |||    
T  33906309 aagcaagatttttattaaaacgaatacaagagatactcgaagcctattacaataagtaaaaaaaattacatattttgaagatatacaatgttgttcaacc 33906210  T
Q  152 actaatccgagaaaacaaattttttattatgc-ccctcccc 191  Q
    ||  |||| ||||||||| |||||||| |||| ||||||||    
T  33906209 accgatcctagaaaacaatttttttatcatgctccctcccc 33906169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 54 - 153
Target Start/End: Complemental strand, 39286738 - 39286639
Alignment:
Q  54 aagcaagattttattaaattgaatacaaggggtactccaagtcgattacaataagtcaagaaattgcatgttttgaagatatacaatggggttcgaccac 153  Q
    |||||||||||| |||||| || |||||| ||||||| | |   ||||||||||||||| ||||| ||||| |  |||| |||||||||||||| |||||    
T  39286738 aagcaagattttgttaaatcgagtacaagaggtactcgatggtcattacaataagtcaataaattacatgtgtgaaagacatacaatggggttcaaccac 39286639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 100 - 201
Target Start/End: Complemental strand, 27479599 - 27479500
Alignment:
Q  100 tacaataagtcaagaaattgcatgttttgaagatatacaatggggttcgaccactaatccgagaaaacaaattttttattatgcccctccccacatatga 199  Q
    |||||||||  ||||| || | |||||| |||| |||||||| ||||| ||||| ||| | ||||||||  |||||||||| |||| | |||||||||||    
T  27479599 tacaataagcaaagaagttacgtgttttaaagacatacaatgaggttcaaccaccaattcaagaaaaca--ttttttattacgcccttacccacatatga 27479502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 103 - 201
Target Start/End: Original strand, 35283338 - 35283436
Alignment:
Q  103 aataagtcaagaaattgcatgttttgaagatatacaatggggttcgaccactaatccgagaaaacaaattttttattatgcccctccccacatatgaac 201  Q
    |||||||||||||||| |||| || ||||| || |||| |||| | ||||| | |  ||||||||||||||||||||| | |||||| |||| ||||||    
T  35283338 aataagtcaagaaattacatgcttcgaagacatccaattgggtccaaccaccattatgagaaaacaaattttttattacgtccctcctcacaaatgaac 35283436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University