View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14412_high_2 (Length: 490)
Name: NF14412_high_2
Description: NF14412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14412_high_2 |
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Alignment Details
Target: chr7 (Bit Score: 450; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 450; E-Value: 0
Query Start/End: Original strand, 7 - 472
Target Start/End: Original strand, 43452969 - 43453434
Alignment:
| Q |
7 |
gatgtcgaagaatattaatattaggagggtaacaccaaaaagtgcaggtcttcgagcagaatcggttttgttgacaaacaatggtccttttagggaattt |
106 |
Q |
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| T |
43452969 |
gatgtcaaaaaatattaatattaggagggtaacaccaaaaagtgcaggtcttcgagcagaatcggttttgttgacaaacaatggtccttttagggaattt |
43453068 |
T |
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| Q |
107 |
tataagttaggagatgaacttgggaaaggaaagtttggaactacttcactttgtttggagaaatcaaccgggaagacatacgcatgcaaagcaataccaa |
206 |
Q |
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| T |
43453069 |
tataagttaggagatgaacttgggaaaggaaagtttggaactacttcactttgtttggagaaatcaaccaggaagacatacgcatgcaaagcaataccaa |
43453168 |
T |
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| Q |
207 |
aggtaaaattgtttagagagaatgatatagaggatgtgaggagggagattgaaataatgcatcacttagttgggattccaaatgtgatatcaataaaagg |
306 |
Q |
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| T |
43453169 |
aggtaaaattgtttagagagaatgatatagaggatgtgaggagggagattgaaataatgcatcacttagttgggattccaaatgtgatatcaataaaagg |
43453268 |
T |
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| Q |
307 |
agcttatgaagatccggtcgttgtttatattgtaatggaattatgtgaaggaggtgagttgtttgacaggattgtggaaaggagacattacaccgagaga |
406 |
Q |
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| T |
43453269 |
agcttatgaagatccggtcgttgtttatattgtaatggaattatgtgaaggaggtgagttgtttgacaggattgtggaaaggagacattacaccgagaga |
43453368 |
T |
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| Q |
407 |
aaggctgctaaactcgcaagaacgattgttaatgttgttgaggcttgtcactcatgtggagttatg |
472 |
Q |
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| T |
43453369 |
aaggctgctaaactcgcaagaacgattgttaatgttgttgaggcttgtcactcacgtggagttatg |
43453434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 32 - 472
Target Start/End: Original strand, 43462433 - 43462873
Alignment:
| Q |
32 |
agggtaacaccaaaaagtgcaggtcttcgagcagaatcggttttgttgacaaacaatggtccttttagggaattttataagttaggagatgaacttggga |
131 |
Q |
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| T |
43462433 |
agggtaacagcaaaaagtgcaggtcttcgagaagaatcaattttgttgtcaaacaatggttcttttaaggaatactatgagttaggagatgaacttggag |
43462532 |
T |
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| Q |
132 |
aaggaaagtttggaactacttcactttgtttggagaaatcaaccgggaagacatacgcatgcaaagcaataccaaaggtaaaattgtttagagagaatga |
231 |
Q |
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| T |
43462533 |
aaggggaatttggaactacttcactttgtttggagaaatcaaccgggaaaacgtatgcatgcaaggtaatcccaaaggtgaaattgttagaagatgatga |
43462632 |
T |
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| Q |
232 |
tatagaggatgtgaggagggagattgaaataatgcatcacttagttgggattccaaatgtgatatcaataaaaggagcttatgaagatccggtcgttgtt |
331 |
Q |
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| T |
43462633 |
tgtagaggatgtgaggagggaaattaagataatgcatcacttggttgggagtctaaatgtgatatgtataaaaggagtttatgaagattctgatgttgtt |
43462732 |
T |
|
| Q |
332 |
tatattgtaatggaattatgtgaaggaggtgagttgtttgacaggattgtggaaaggagacattacaccgagagaaaggctgctaaactcgcaagaacga |
431 |
Q |
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| T |
43462733 |
tatattgtcatggaattatgtaaaggaggtgagttgtttgataggattgtgaaaagaggttactacgccgaacaaaaggccgctaaacttgcaagaacta |
43462832 |
T |
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| Q |
432 |
ttgttaatgttgttgaggcttgtcactcatgtggagttatg |
472 |
Q |
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| T |
43462833 |
tcgttagtgttgttgagacttgtcactcacgtggagttatg |
43462873 |
T |
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