View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14412_high_5 (Length: 397)
Name: NF14412_high_5
Description: NF14412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14412_high_5 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 305; Significance: 1e-171; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 19 - 384
Target Start/End: Original strand, 8554607 - 8554973
Alignment:
| Q |
19 |
ccacgtacttcctcaggctgtgtgtagcaagccnnnnnnn-aggggtttcctctttgataaacaacaaaagttctagctccaaatatactttaaactacc |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8554607 |
ccacgtacttcctcaggctgtgtgtagcaagccttttttttaggggtttcctctttgataaacaacaaaagttctagctccaaatatactttaaactacc |
8554706 |
T |
|
| Q |
118 |
atagaatcaaacatggcagagtttcaaaacttgaagtacaagcaaggagaaaaggttgctacaaagnnnnnnnggaatggaattagtagcaagtgtgctt |
217 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
8554707 |
atagaatcaaccatggcagagtttcaaaacttgaagtacaagcaaggagaaaaggttgctacaaagaaaaaaaggaatggaattagtagcaagtgtgctt |
8554806 |
T |
|
| Q |
218 |
ctttggttaaggagcaacgagctcgtctctacatcgttcgtcgttgtgccaccatgcttctttgttggtacattcaaggagaagactagcaacatactct |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8554807 |
ctttggttaaggagcaacgagctcgtctctacatcgttcgtcgttgtgccaccatgcttctttgttggtacattcaaggagaagactagcaacatactct |
8554906 |
T |
|
| Q |
318 |
ctaacaaactcctcggatttcacctccttttggtcttcctttatagctataaataacacgcggagaa |
384 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8554907 |
ctaacaaactcctcggatcgcacctccttttggtcttcctttatagctataaataacacgcggagaa |
8554973 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 215 - 304
Target Start/End: Complemental strand, 48635292 - 48635203
Alignment:
| Q |
215 |
cttctttggttaaggagcaacgagctcgtctctacatcgttcgtcgttgtgccaccatgcttctttgttggtacattcaaggagaagact |
304 |
Q |
| |
|
|||||||||||||||| ||||| ||||||||||||||| | || || |||||||||||||| || |||| ||| || |||||||| |||| |
|
|
| T |
48635292 |
cttctttggttaaggaacaacgtgctcgtctctacatcttgcgccgctgtgccaccatgctcctctgttcgtatatccaaggagatgact |
48635203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University