View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14412_high_9 (Length: 351)
Name: NF14412_high_9
Description: NF14412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14412_high_9 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 19 - 332
Target Start/End: Original strand, 15924230 - 15924543
Alignment:
| Q |
19 |
atactaagtattttgaaattatttcagctatgatatggaaatgtatagcacaaataagaggagactttggaccaaaagttgtgacaatatgtagtaaaaa |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||| |||||||||| ||||||||||||||||||||||| |
|
|
| T |
15924230 |
atactaagtattttgaaattatttcagctacgatatggaaatgtatagcacaaataagaggtgacattggaccaaaggttgtgacaatatgtagtaaaaa |
15924329 |
T |
|
| Q |
119 |
taaaaatacctctaaatgtgctgaaaacgaattcccaacaaatgacatattgttgagcaaaatcgaaacaaatttgcgcccggaggaatataatatatta |
218 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15924330 |
taaaaatacctctaaatgtgctgaaaatgaattcccaacaaatgacatattgttgagcaaaatcgaaacaaatttgcgcccggaggaatataatatatta |
15924429 |
T |
|
| Q |
219 |
gatttaatgaatctgattagtgagnnnnnnnttaatgagaattatgcattggaaaagttggtggagaaaggtgatggaaaagatgannnnnnngtatatg |
318 |
Q |
| |
|
|||||||||||||||||| ||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
15924430 |
gatttaatgaatctgattggtgagaaaaaaattaatgagaattatgcattggaaaaattggtggagaaaggtgatggaaaagatgatttttttgtatatg |
15924529 |
T |
|
| Q |
319 |
gagcaaagttaaca |
332 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
15924530 |
gagcaaagttaaca |
15924543 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 27 - 193
Target Start/End: Original strand, 13116062 - 13116222
Alignment:
| Q |
27 |
tattttgaaattatttcagctatgatatggaaatgtatagcacaaataagaggagactttggaccaaaagttgtgacaatatgtagtaaaaataaaaata |
126 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||| |||||||||||||| ||||||| | ||||||||||||||| | || ||||| |
|
|
| T |
13116062 |
tattttgaaattatttcagctatgatttggaaatgtatagcgcaaataagaggagattttggacagacggttgtgacaatatgt------actacaaata |
13116155 |
T |
|
| Q |
127 |
cctctaaatgtgctgaaaacgaattcccaacaaatgacatattgttgagcaaaatcgaaacaaattt |
193 |
Q |
| |
|
|||||| |||||||||| |||||||||||||||| | ||||||||||||| ||||||||||| |
|
|
| T |
13116156 |
tctctaatcgtgctgaaaatgaattcccaacaaatggctccgtgttgagcaaaattgaaacaaattt |
13116222 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 24 - 189
Target Start/End: Original strand, 46011191 - 46011350
Alignment:
| Q |
24 |
aagtattttgaaattatttcagctatgatatggaaatgtatagcacaaataagaggagactttggaccaaaagttgtgacaatatgtagtaaaaataaaa |
123 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||| |||||||||| | ||||||||||||||| | || || |
|
|
| T |
46011191 |
aagtattttgaaattatttcagctatgatttggaaatgtataggacaaataagaggaaactttggacctagggttgtgacaatatgt------actacaa |
46011284 |
T |
|
| Q |
124 |
atacctctaaatgtgctgaaaacgaattcccaacaaatgacatattgttgagcaaaatcgaaacaa |
189 |
Q |
| |
|
||| |||||| | |||||||| |||||||| ||||||| | ||||||||||||||||||||| |
|
|
| T |
46011285 |
atatctctaatcgcgctgaaaatgaattcccgacaaatggctcggtgttgagcaaaatcgaaacaa |
46011350 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 24 - 60
Target Start/End: Original strand, 10419993 - 10420029
Alignment:
| Q |
24 |
aagtattttgaaattatttcagctatgatatggaaat |
60 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
10419993 |
aagtattttgaaattatttcagcgatgatatggaaat |
10420029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University