View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14412_low_1 (Length: 767)
Name: NF14412_low_1
Description: NF14412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14412_low_1 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 634; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 634; E-Value: 0
Query Start/End: Original strand, 20 - 755
Target Start/End: Original strand, 28183208 - 28183941
Alignment:
| Q |
20 |
caattcgcaactgtcagcattatgtttgtttcaaaattttactatttgtattaatannnnnnnnctnnnnnnntagagacaatgaatcacaaaaatgtaa |
119 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||| |
|
|
| T |
28183208 |
caattcgcaactgtcaccattatgtttgtttcaaaattttactatttgtattaatattttttttctaaaaaaatagagacaatgaatcacaaaaatgtaa |
28183307 |
T |
|
| Q |
120 |
tacatattttcatggttgaaagtaaacactatttattcatggnnnnnnnncaccatttacatcaaagatcacgtatcatatgatatttgcacccaaagtt |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28183308 |
tacatattttcatggttgaaagtaaacactatttattcatggaaaaaaaacaccatttacatcaaagatcacgtatcatatgatatttgcacccaaagtt |
28183407 |
T |
|
| Q |
220 |
ttggcaaacaaatgaaattctattacaaaaacaattaaaagttccttaacatcaaggaaaaacttaataaacgatgctatca-aaggatattggtttgtc |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
28183408 |
ttggcaaacaaatgaaattctattacaaaaacaattaaaagttcctgaacatcaaggaaaaacttaataaacgatgctatcagaaggatattggtttgtc |
28183507 |
T |
|
| Q |
319 |
atttaccataggcttatagacaaaccaatattgcttctcaaagcaactactagtctgctacaaatatataaagaaatcatttctccaagaaacagattga |
418 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28183508 |
atttaccataggcttataga---accaatattgcttctcaaagcaactactagtctgctacaaatatataaagaaatcatttctccaagaaacagattga |
28183604 |
T |
|
| Q |
419 |
gcaaattaacaaattggaagaggagcgccgttccactctccgagacattccataagaggatcaacaattttaccttggcacatagctgtgaacaatttgt |
518 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28183605 |
gtaaattaacaaattggaagaggagcgccgttccactctccgagacattccataagaggatcaacaattttaccttggcacatagctgtgaacaatttgt |
28183704 |
T |
|
| Q |
519 |
cgcactcttctcctggcgatatcactttttcaccggttagcaacgctgttcccaactcctctctaacaaacttgtacaatggataagacctacattcctt |
618 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28183705 |
cgcactcttctcctggcgatatcactttttcaccggttagcaacgctgttcccaactcctctctaacaaacttgtacaatggataagacctacattcctt |
28183804 |
T |
|
| Q |
619 |
aatcttgtttgaaattccactttgtccattttcatatgctgtccttgcactttcaacttcctttggcaagatagccttcaattcatcctcaaatgttgca |
718 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28183805 |
aatcttgtttgaaattccactttgtccattttcatatgctgtccttgcactttcaacttcctttggcaagatagccttcaattcatcctcaaatgttgca |
28183904 |
T |
|
| Q |
719 |
atcttttggaagattgatgtgttcgaattcttctctc |
755 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28183905 |
atcttttggaagattgatgtgttcgaattcttctctc |
28183941 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 106; Significance: 1e-52; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 424 - 753
Target Start/End: Complemental strand, 40945809 - 40945480
Alignment:
| Q |
424 |
ttaacaaattggaagaggagcgccgttccactctccgagacattccataagaggatcaacaattttaccttggcacatagctgtgaacaatttgtcgcac |
523 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||| | ||||| | ||||||||||| ||||| || || |||||||||||||| |||||||| ||| |
|
|
| T |
40945809 |
ttaacaaattggaagaggagcaccgttccactctcccaagcattcaagaagaggatcaatgatttttccctgacacatagctgtgaataatttgtcacac |
40945710 |
T |
|
| Q |
524 |
tcttctcctggcgatatcactttttcaccggttagcaacgctgttcccaactcctctctaacaaacttgtacaatggataagacctacattccttaatct |
623 |
Q |
| |
|
|||| || || || || || ||||| || ||||| || | ||||||||||||||||||||||||||||| | ||||||||| || ||| | || |||| |
|
|
| T |
40945709 |
acttcaccgggtgaaatgacattttctccagttagtaaaccagttcccaactcctctctaacaaacttgtaaagtggataagatctgcatccattgatct |
40945610 |
T |
|
| Q |
624 |
tgtttgaaattccactttgtccattttcatatgctgtccttgcactttcaacttcctttggcaagatagccttcaattcatcctcaaatgttgcaatctt |
723 |
Q |
| |
|
|||||| |||| | |||| | |||||||| ||||||||||||||||| || |||||||||| |||||| || |||||||| ||||||||||| |
|
|
| T |
40945609 |
tgtttggaattgttgggtttccactctcatatgcggtccttgcactttcaacctcttttggcaagaggctcttcaactcttcctcaaaagttgcaatctt |
40945510 |
T |
|
| Q |
724 |
ttggaagattgatgtgttcgaattcttctc |
753 |
Q |
| |
|
||| |||||||| |||||| |||||||||| |
|
|
| T |
40945509 |
ttgaaagattgaagtgttcaaattcttctc |
40945480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 424 - 753
Target Start/End: Complemental strand, 40959774 - 40959445
Alignment:
| Q |
424 |
ttaacaaattggaagaggagcgccgttccactctccgagacattccataagaggatcaacaattttaccttggcacatagctgtgaacaatttgtcgcac |
523 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||| | ||||| | ||||||||||| ||||| || || |||||||||||||| |||||||| ||| |
|
|
| T |
40959774 |
ttaacaaattggaagaggagcaccgttccactctcccaagcattcaagaagaggatcaatgatttttccctgacacatagctgtgaataatttgtcacac |
40959675 |
T |
|
| Q |
524 |
tcttctcctggcgatatcactttttcaccggttagcaacgctgttcccaactcctctctaacaaacttgtacaatggataagacctacattccttaatct |
623 |
Q |
| |
|
|||| || || || || || ||||| || ||||| || | ||||||||||||||||||||||||||||| | ||||||||| || ||| | || |||| |
|
|
| T |
40959674 |
acttcaccgggtgaaatgacattttctccagttagtaaaccagttcccaactcctctctaacaaacttgtaaagtggataagatctgcatccattgatct |
40959575 |
T |
|
| Q |
624 |
tgtttgaaattccactttgtccattttcatatgctgtccttgcactttcaacttcctttggcaagatagccttcaattcatcctcaaatgttgcaatctt |
723 |
Q |
| |
|
|||||| |||| | |||| | |||||||| ||||||||||||||||| || |||||||||| |||||| || |||||||| ||||||||||| |
|
|
| T |
40959574 |
tgtttggaattgttgggtttccactctcatatgcggtccttgcactttcaacctcttttggcaagaggctcttcaactcttcctcaaaagttgcaatctt |
40959475 |
T |
|
| Q |
724 |
ttggaagattgatgtgttcgaattcttctc |
753 |
Q |
| |
|
||| |||||||| |||||| |||||||||| |
|
|
| T |
40959474 |
ttgaaagattgaagtgttcaaattcttctc |
40959445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 584 - 711
Target Start/End: Complemental strand, 43217396 - 43217269
Alignment:
| Q |
584 |
acaaacttgtacaatggataagacctacattccttaatcttgtttgaaattccactttgtccattttcatatgctgtccttgcactttcaacttcctttg |
683 |
Q |
| |
|
||||||||||| | ||| || ||||||||||||||||| |||||| |||| || | ||| || ||| |||| ||||||||||||||||||||||| |
|
|
| T |
43217396 |
acaaacttgtatagtgggtatgacctacattccttaattctgtttggaatttcagaatttcccttctcaaatgcaacccttgcactttcaacttcctttg |
43217297 |
T |
|
| Q |
684 |
gcaagatagccttcaattcatcctcaaa |
711 |
Q |
| |
|
|||| | || |||||||||||||||||| |
|
|
| T |
43217296 |
gcaaaagagacttcaattcatcctcaaa |
43217269 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 569 - 627
Target Start/End: Complemental strand, 40550384 - 40550326
Alignment:
| Q |
569 |
cccaactcctctctaacaaacttgtacaatggataagacctacattccttaatcttgtt |
627 |
Q |
| |
|
||||| ||||||||||||||||| ||||||||||||||||| |||||||| || ||||| |
|
|
| T |
40550384 |
cccaattcctctctaacaaacttatacaatggataagacctgcattccttgattttgtt |
40550326 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University