View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14412_low_11 (Length: 300)

Name: NF14412_low_11
Description: NF14412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14412_low_11
NF14412_low_11
[»] chr5 (1 HSPs)
chr5 (15-282)||(14233476-14233743)
[»] chr4 (4 HSPs)
chr4 (15-212)||(9880718-9880915)
chr4 (217-282)||(9880631-9880694)
chr4 (97-214)||(5721973-5722090)
chr4 (23-124)||(26904852-26904953)
[»] chr1 (1 HSPs)
chr1 (23-212)||(44536445-44536634)
[»] chr7 (3 HSPs)
chr7 (23-141)||(296575-296693)
chr7 (23-210)||(35898090-35898277)
chr7 (23-205)||(30380091-30380272)
[»] chr3 (2 HSPs)
chr3 (23-212)||(34982781-34982968)
chr3 (97-214)||(18645743-18645860)
[»] scaffold0038 (1 HSPs)
scaffold0038 (21-212)||(48753-48944)
[»] chr6 (2 HSPs)
chr6 (21-212)||(28248591-28248782)
chr6 (23-136)||(29011241-29011357)
[»] chr8 (1 HSPs)
chr8 (23-141)||(37787137-37787255)
[»] chr2 (2 HSPs)
chr2 (23-212)||(301769-301958)
chr2 (58-210)||(3461218-3461370)


Alignment Details
Target: chr5 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 15 - 282
Target Start/End: Complemental strand, 14233743 - 14233476
Alignment:
Q  15 cacatagtttgacaagtagcaaatgttcttgcaatatacccagcttcacagaatgagagtgcagtaattggttgcttcttgatgcaccaggatatggaag 114  Q
    ||||||| ||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14233743 cacatagcttgacaagtagcaaatgttcttgcaatatgctcagcttcacagaatgagagtgcagtaattggttgcttcttgatgcaccaggatatggaag 14233644  T
Q  115 catcattgaacttgaaaacatagcctgggatgcttcttctgtcaatcaaatctccacaccagtcactatttgagtaaactataagctcattcacttcaat 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14233643 catcattgaacttgaaaacatagcctgggatgcttcttctgtcaatcaaatctccacaccagtcactatttgagtaaactataagctcattcacttcaat 14233544  T
Q  215 aacaaaccaaatttcacatattacccttgatgtaactaaggattctcttagcaactataaaatgagat 282  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14233543 aacaaaccaaatttcacatattacccttgatgtaactaaggattctcttagcaactataaaatgagat 14233476  T

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Target: chr4 (Bit Score: 102; Significance: 1e-50; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 15 - 212
Target Start/End: Complemental strand, 9880915 - 9880718
Alignment:
Q  15 cacatagtttgacaagtagcaaatgttcttgcaatatacccagcttcacagaatgagagtgcagtaattggttgcttcttgatgcaccaggatatggaag 114  Q
    |||| |||||||||||||| |||||||| | |||||||| || ||||| || |||||||| |||||| | ||||||||||| || |||||||||||||||    
T  9880915 cacaaagtttgacaagtagaaaatgttcctacaatatactcaacttcataggatgagagtacagtaactagttgcttcttggtgtaccaggatatggaag 9880816  T
Q  115 catcattgaacttgaaaacatagcctgggatgcttcttctgtcaatcaaatctccacaccagtcactatttgagtaaactataagctcattcacttca 212  Q
     |||||||||||||||||||||||||| | |||||||||||||| |||||||||||||||| ||||| |  |||||| |||||| |||||||| ||||    
T  9880815 aatcattgaacttgaaaacatagcctgaggtgcttcttctgtcagtcaaatctccacaccaatcactgtcagagtaacctataaactcattcaattca 9880718  T

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Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 217 - 282
Target Start/End: Complemental strand, 9880694 - 9880631
Alignment:
Q  217 caaaccaaatttcacatattacccttgatgtaactaaggattctcttagcaactataaaatgagat 282  Q
    ||||||||||| ||  |||||||||||||||| |||||||||||||||||| |||| |||||||||    
T  9880694 caaaccaaattcca--tattacccttgatgtatctaaggattctcttagcagctatcaaatgagat 9880631  T

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Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 97 - 214
Target Start/End: Original strand, 5721973 - 5722090
Alignment:
Q  97 tgcaccaggatatggaagcatcattgaacttgaaaacatagcctgggatgcttcttctgtcaatcaaatctccacaccagtcactatttgagtaaactat 196  Q
    |||||||||| || | |||||||||||| ||||| ||||| |||    ||||||| || ||||| | |||||||||||| ||||| | ||| ||| ||||    
T  5721973 tgcaccaggagattgcagcatcattgaatttgaacacataacctaaagtgcttctcctatcaattagatctccacaccaatcactgtctgaataacctat 5722072  T
Q  197 aagctcattcacttcaat 214  Q
     |||||||||||||||||    
T  5722073 gagctcattcacttcaat 5722090  T

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Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 23 - 124
Target Start/End: Complemental strand, 26904953 - 26904852
Alignment:
Q  23 ttgacaagtagcaaatgttcttgcaatatacccagcttcacagaatgagagtgcagtaattggttgcttcttgatgcaccaggatatggaagcatcattg 122  Q
    |||||| ||| ||||| | |||||||| ||| || |||||||| |||| |||||| |||  |||||||||||| | ||||| ||||| |||||||| |||    
T  26904953 ttgacatgtatcaaatatacttgcaatttactcaacttcacaggatgaaagtgcactaacaggttgcttcttggtacaccaagatatagaagcatcgttg 26904854  T
Q  123 aa 124  Q
    ||    
T  26904853 aa 26904852  T

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Target: chr1 (Bit Score: 62; Significance: 8e-27; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 23 - 212
Target Start/End: Original strand, 44536445 - 44536634
Alignment:
Q  23 ttgacaagtagcaaatgttcttgcaatatacccagcttcacagaatgagagtgcagtaattggttgcttcttgatgcaccaggatatggaagcatcattg 122  Q
    |||||||||||||||||||  |||||| ||| | | || || | ||||||| ||||| ||||||||||||||| |||||||||| || | ||||||||||    
T  44536445 ttgacaagtagcaaatgtttctgcaatgtactctggtttactggatgagagcgcagtgattggttgcttcttggtgcaccaggagattgcagcatcattg 44536544  T
Q  123 aacttgaaaacatagcctgggatgcttcttctgtcaatcaaatctccacaccagtcactatttgagtaaactataagctcattcacttca 212  Q
    || ||||| ||||| ||||   ||||||| || ||||| | |||||||||||| ||||| | ||| ||  |||| |||||||||||||||    
T  44536545 aatttgaacacataacctgaagtgcttctcctatcaattagatctccacaccaatcactgtctgaatatcctatgagctcattcacttca 44536634  T

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Target: chr7 (Bit Score: 59; Significance: 5e-25; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 23 - 141
Target Start/End: Complemental strand, 296693 - 296575
Alignment:
Q  23 ttgacaagtagcaaatgttcttgcaatatacccagcttcacagaatgagagtgcagtaattggttgcttcttgatgcaccaggatatggaagcatcattg 122  Q
    |||| ||||||||||||||| |||||| ||| |||||||| || |||||||||| || ||||||||||||||| |||||||||| || | ||||||||||    
T  296693 ttgaaaagtagcaaatgttcctgcaatgtactcagcttcataggatgagagtgcggtgattggttgcttcttggtgcaccaggagattgcagcatcattg 296594  T
Q  123 aacttgaaaacatagcctg 141  Q
    || ||||| ||||| ||||    
T  296593 aatttgaacacataacctg 296575  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 23 - 210
Target Start/End: Complemental strand, 35898277 - 35898090
Alignment:
Q  23 ttgacaagtagcaaatgttcttgcaatatacccagcttcacagaatgagagtgcagtaattggttgcttcttgatgcaccaggatatggaagcatcattg 122  Q
    ||||||||||| ||| ||||  || || ||| | ||||||||  ||||||||||||| | ||||||||||||  ||||||| || || | ||||||||||    
T  35898277 ttgacaagtagaaaaagttccagctatgtactctgcttcacatgatgagagtgcagtgactggttgcttctttgtgcaccatgagattgcagcatcattg 35898178  T
Q  123 aacttgaaaacatagcctgggatgcttcttctgtcaatcaaatctccacaccagtcactatttgagtaaactataagctcattcactt 210  Q
    || ||||| ||||| ||||   || |||| || ||| | |  ||||||||||| |||||||  |||||  |||| || ||||||||||    
T  35898177 aatttgaacacataacctgaagtgtttctcctatcagttaggtctccacaccaatcactatcagagtatcctatgagttcattcactt 35898090  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 23 - 205
Target Start/End: Complemental strand, 30380272 - 30380091
Alignment:
Q  23 ttgacaagtagcaaatgttcttgcaatatacccagcttcacagaatgagagtgcagtaattggttgcttcttgatgcaccaggatatggaagcatcattg 122  Q
    ||||||||||||||| |||| | |||| ||  || |||||||  ||| ||||||||| | | ||||||| ||| | |||||||| || | ||||||||||    
T  30380272 ttgacaagtagcaaaagttccttcaatgtattcaacttcacatgatgcgagtgcagtgactagttgctt-ttggtacaccaggagattgcagcatcattg 30380174  T
Q  123 aacttgaaaacatagcctgggatgcttcttctgtcaatcaaatctccacaccagtcactatttgagtaaactataagctcatt 205  Q
    || ||||| || ||| | |   |||||||||| ||| | | |||||||||||| ||||||| |||| || | || ||||||||    
T  30380173 aatttgaatacgtagtccgatgtgcttcttctatcagttagatctccacaccaatcactatctgagaaacccatgagctcatt 30380091  T

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Target: chr3 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 23 - 212
Target Start/End: Complemental strand, 34982968 - 34982781
Alignment:
Q  23 ttgacaagtagcaaatgttcttgcaatatacccagcttcacagaatgagagtgcagtaattggttgcttcttgatgcaccaggatatggaagcatcattg 122  Q
    |||||||||||||||||||| |||||||||| || |||||||| ||  ||||||||| | | ||||||||||| | ||||| || || | || |||||||    
T  34982968 ttgacaagtagcaaatgttcatgcaatatactcaacttcacaggat--gagtgcagtgactagttgcttcttggtacaccatgaaattgcagtatcattg 34982871  T
Q  123 aacttgaaaacatagcctgggatgcttcttctgtcaatcaaatctccacaccagtcactatttgagtaaactataagctcattcacttca 212  Q
    || ||||| ||||||||||   ||||  |||| ||  | | |||||||||||| ||||||| ||||||| |||| |||||||| ||||||    
T  34982870 aatttgaacacatagcctgatgtgctctttctatcggttagatctccacaccaatcactatctgagtaacctatgagctcattaacttca 34982781  T

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Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 97 - 214
Target Start/End: Original strand, 18645743 - 18645860
Alignment:
Q  97 tgcaccaggatatggaagcatcattgaacttgaaaacatagcctgggatgcttcttctgtcaatcaaatctccacaccagtcactatttgagtaaactat 196  Q
    |||||||||| || | |||||||||||| ||||| ||||| |||    ||||||| || ||||| | |||||||||||| ||||| | ||| ||| ||||    
T  18645743 tgcaccaggagattgcagcatcattgaatttgaacacataacctaaagtgcttctcctatcaattagatctccacaccaatcactgtctgaataacctat 18645842  T
Q  197 aagctcattcacttcaat 214  Q
     |||||||||||||||||    
T  18645843 gagctcattcacttcaat 18645860  T

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Target: scaffold0038 (Bit Score: 52; Significance: 8e-21; HSPs: 1)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 21 - 212
Target Start/End: Complemental strand, 48944 - 48753
Alignment:
Q  21 gtttgacaagtagcaaatgttcttgcaatatacccagcttcacagaatgagagtgcagtaattggttgcttcttgatgcaccaggatatggaagcatcat 120  Q
    ||||| ||||||||||| ||||  || || ||| | ||||||||| |||| |||||||| | ||||||||||||| ||||||| || || | ||||||||    
T  48944 gtttggcaagtagcaaaagttccagctatgtactctgcttcacaggatgaaagtgcagtgactggttgcttcttggtgcaccatgaaattgcagcatcat 48845  T
Q  121 tgaacttgaaaacatagcctgggatgcttcttctgtcaatcaaatctccacaccagtcactatttgagtaaactataagctcattcacttca 212  Q
    |||| ||||| ||||| | ||   || |||| || ||||| | |||||||||||| ||||| | ||| ||| |||| |||||||||||||||    
T  48844 tgaatttgaacacataacttgaagtgtttctcctatcaattagatctccacaccaatcactgtctgaataacctatgagctcattcacttca 48753  T

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Target: chr6 (Bit Score: 52; Significance: 8e-21; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 21 - 212
Target Start/End: Complemental strand, 28248782 - 28248591
Alignment:
Q  21 gtttgacaagtagcaaatgttcttgcaatatacccagcttcacagaatgagagtgcagtaattggttgcttcttgatgcaccaggatatggaagcatcat 120  Q
    ||||| ||||||||||| ||||  || || ||| | ||||||||| |||| |||||||| | ||||||||||||| ||||||| || || | ||||||||    
T  28248782 gtttggcaagtagcaaaagttccagctatgtactctgcttcacaggatgaaagtgcagtgactggttgcttcttggtgcaccatgaaattgcagcatcat 28248683  T
Q  121 tgaacttgaaaacatagcctgggatgcttcttctgtcaatcaaatctccacaccagtcactatttgagtaaactataagctcattcacttca 212  Q
    |||| ||||| ||||| | ||   || |||| || ||||| | |||||||||||| ||||| | ||| ||| |||| |||||||||||||||    
T  28248682 tgaatttgaacacataacttgaagtgtttctcctatcaattagatctccacaccaatcactgtctgaataacctatgagctcattcacttca 28248591  T

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Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 23 - 136
Target Start/End: Original strand, 29011241 - 29011357
Alignment:
Q  23 ttgacaagtagcaaatgttcttgcaatatacccagcttcacagaatgagagtgcagtaatt---ggttgcttcttgatgcaccaggatatggaagcatca 119  Q
    |||||| ||||||||| ||| |||||||||| ||||||||||  ||||||||||||||| |    ||||||||||| ||||||| |||||   | |||||    
T  29011241 ttgacatgtagcaaatattcctgcaatatactcagcttcacaagatgagagtgcagtaagtacatgttgcttcttggtgcaccaagatataacaacatca 29011340  T
Q  120 ttgaacttgaaaacata 136  Q
    ||||||||||| |||||    
T  29011341 ttgaacttgaagacata 29011357  T

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Target: chr8 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 23 - 141
Target Start/End: Original strand, 37787137 - 37787255
Alignment:
Q  23 ttgacaagtagcaaatgttcttgcaatatacccagcttcacagaatgagagtgcagtaattggttgcttcttgatgcaccaggatatggaagcatcattg 122  Q
    |||||||||||||||||||| |||||| ||| | |||||| |  |||||||| | || ||||||||||||||| ||||| |||| || | ||||||||||    
T  37787137 ttgacaagtagcaaatgttcctgcaatgtactctgcttcataagatgagagtcctgtgattggttgcttcttggtgcactaggagattgcagcatcattg 37787236  T
Q  123 aacttgaaaacatagcctg 141  Q
    || ||||| ||||| ||||    
T  37787237 aatttgaacacataacctg 37787255  T

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Target: chr2 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 23 - 212
Target Start/End: Complemental strand, 301958 - 301769
Alignment:
Q  23 ttgacaagtagcaaatgttcttgcaatatacccagcttcacagaatgagagtgcagtaattggttgcttcttgatgcaccaggatatggaagcatcattg 122  Q
    |||||||||||||||||||| |||||| ||| | ||  ||  | ||||||||||| | | ||||||||||||| ||||||| || || | ||||||||||    
T  301958 ttgacaagtagcaaatgttcctgcaatgtactctgcaccattggatgagagtgcattgactggttgcttcttggtgcaccaagagattgcagcatcattg 301859  T
Q  123 aacttgaaaacatagcctgggatgcttcttctgtcaatcaaatctccacaccagtcactatttgagtaaactataagctcattcacttca 212  Q
    || ||||| |||||  |||   ||||||| || ||||| | |||||||||||| ||| | | ||| ||| |||| || ||||||||||||    
T  301858 aatttgaacacataatctgaagtgcttctcctatcaattagatctccacaccaatcattgtctgaataacctatgaggtcattcacttca 301769  T

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Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 58 - 210
Target Start/End: Complemental strand, 3461370 - 3461218
Alignment:
Q  58 cttcacagaatgagagtgcagtaattggttgcttcttgatgcaccaggatatggaagcatcattgaacttgaaaacatagcctgggatgcttcttctgtc 157  Q
    |||||||  ||||||||||||| | ||||||||||||  ||||||| || || | |||||||||||| ||||| ||||| ||||   ||||||| || ||    
T  3461370 cttcacatgatgagagtgcagtgactggttgcttctttgtgcaccatgagattgcagcatcattgaatttgaacacataacctgaagtgcttctcctatc 3461271  T
Q  158 aatcaaatctccacaccagtcactatttgagtaaactataagctcattcactt 210  Q
    | |||  ||||||||||| |||||||  |||||   ||| |||||||||||||    
T  3461270 agtcaggtctccacaccaatcactatcagagtatcatatgagctcattcactt 3461218  T

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